Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008127

Physical Location & Seq

Genomic Coordinates Reverse (-)

59105780 .. 59107808

Gene Structure 2029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0433000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1674 bp

ATGGATGACCTGGTCAACTTCCTCACTGCACTGGCAACCATCTATGCTTCCTCAACAATCCATACTAGTAATGGTGATCATAAGGCCTCAATGGGTCTCAGAGATCTTCTGAAAAGTTCCATATCCAAATCACGGTGGCGCGACGGTGTTTTCACATTCATTGCTATGTCCATGTTGTACAATATTTGTTTACCTTATGTGTCCTATTGTATTCATGTACAACAGCTGCATTTATCAGGTTTTAGAGACAGTTTAATCTTGAAGTTTGTACATGTTGTGGTTCCTGCTGTGACATTTTCTATATGGGTGGAGTACAATGCCTGGTGGAAGCCAAGTGTTGTTGTGTCCGTTTTAGAGTTAGAGGAGCAGAGAGGATTTCAAGCATTTTCAACCTCAACACAGTTAATGAAAGGAAACAAACTACGAGGATTCGTCTTGATGCTTCTTCTTTGGAGCTCGGATTGGCCAACCATCCTTAGAGGACAGAGTTCCAATTTGCCAACCCTCCTTAGAGGACAGAGTTTTTACGTTCCAAGTACAGATATTGCACATGTTTTTCTTCACGCAGGCCTATTGTGTTTAGGGAAGGTCATGACTTGGATGGTTTTCACAGTATATTACTTCGATTGCAAGAATCGTCGGCAGAAAAGATTCAAAGTGAAAGCTGCAGTTTTAGAAATATTTCTGTGTCTAATAGACTATAGAGTAACAGCAAGTGAATTAGTGAAGGGCATGGATATGGAAAGCAACCATATCATCATGTTGAAGCAAAAGCTTGGAGTCTTTGATATACTCAAAGAAGCTCTTTATTTAATCTGCAAGAACCACAGCTTTATTGTACTCACCTTTCTCACCTCTCTACCCTTTTTCTGTTTCTCAATTTACTATGAATCACACCTGAAAAGAACCCTGGTTCAAATCTCAGAGTTTCTAAACCAAAATTCTGGTTTTTTCAACTACAATTGGCAAACACAGCTGCATACTGCAACAAGTATGGCCCAGATGTTTTCCAACAACTTGATACAACTGGGACTTCTTTATCTGATACCTCTCCATCTCCTAGAGCTTTGCAGTGCTTTTGTGATTGTCGATTTGGCCTCAAAGTTAGGAGGAAAAGGGAAGTTCGGGGAGGTATCTGGTGGTGGCAGTGTTACCAGAATGGTGCGCTTCAAAGGAACTCTTGTCACATCCATCTGGGTACTTTTCTTATCAACTTGTACTGTAGTTGGATCAATATGGTTAGTCTCAGTATACTATGTTCTATTGAGAAACTTTGGGTACTATAATACATATTGTAGAGTGCTATACAAGGCAGCTTGTATGGCACTGCTAGCAAATTACTTAGAGTGGGGTGCTATATGGAACATGGGCATTGTAATTTCAATACTGGAGAACAGACATGGGGCTAATGCACTCATGTTCTCAGCCTATCTAAGCAGAGGTAGAGAACGACGGCAAGGACTTGTTTTGATGCTTATTTTCGGTGTCTGGGGACTCGGTTTAAGGCTGGCATGCCTCTTCTTTAAATGCTATGAAGGAAAAGGTGGAATTGTTGCTCAGATGGGCCTTTTCTGTACTGGCAATGTGGTGAAGTGGGTTGCGTTCATGATTTATTCCTACAATTGCAAAATCCTGATCTCAGAGAAGAGAGTTGATGTGGAAATTGGACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

557

Amino Acids

63.36

Weight (kDa)

9.31

Isoelectric Point (pI)

32.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008127)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04890 FvH4_3g04890 FvH4_3g04890 FvH4_3g04890 FvH4_3g04890 FvH4_3g04890
malus_domestica	MD05G1315100.v1.1 MD10G1296400.v1.1
prunus_persica	Prupe.4G044200_v2.0.a1 Prupe.4G044200_v2.0.a1
pyrus_communis	pycom05g29270 pycom10g24900
rosa_chinensis	RchiOBHm_Chr5g0008051
rosa_laevigata	RLG00000031531
rosa_multiflora	Rmu_sc0017465.1_g000001 Rmu_sc0026680.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068430
rosa_rugosa	Rorug04G0432900 Rorug04G0433000
rosa_samantha	Rh5AG061000 Rh5BG057800 Rh5CG067900 Rh5DG057000
rosa_wichuraiana	Rw5G005960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1251
AccII	CGCG	1 cut(s)	141
AclWI	GGATC	1 cut(s)	1237
AcoI	YGGCCR	1 cut(s)	464
AcsI	RAATTY	1 cut(s)	940
AfiI	CCNNNNNNNGG	1 cut(s)	132
AflIII	ACRYGT	2 cut(s)	271, 550
AgsI	TTSAA	9 cut(s)	262, 380, 390, 655, 766, 917, 955, 1171, 1383
AhlI	ACTAGT	1 cut(s)	65
AjnI	CCWGG	3 cut(s)	9, 320, 909
AluBI	AGCT	9 cut(s)	226, 456, 665, 775, 803, 831, 976, 1066, 1316
AluI	AGCT	9 cut(s)	226, 456, 665, 775, 803, 831, 976, 1066, 1316
Alw21I	GWGCWC	1 cut(s)	458
Alw26I	GTCTC	3 cut(s)	101, 240, 1249
AlwI	GGATC	1 cut(s)	1237
AoxI	GGCC	6 cut(s)	84, 464, 568, 996, 1095, 1564
ApeKI	GCWGC	4 cut(s)	226, 665, 976, 1313
ApoI	RAATTY	1 cut(s)	940
Asp700I	GAANNNNTTC	2 cut(s)	650, 681
AspLEI	GCGC	2 cut(s)	141, 1167
AspS9I	GGNCC	2 cut(s)	997, 1564
AsuHPI	GGTGA	4 cut(s)	86, 835, 844, 1600
AsuNHI	GCTAGC	1 cut(s)	1330
BalI	TGGCCA	1 cut(s)	466
BanII	GRGCYC	1 cut(s)	458
Bbv12I	GWGCWC	1 cut(s)	458
BbvI	GCAGC	4 cut(s)	213, 652, 963, 1325
BccI	CCATC	6 cut(s)	47, 479, 595, 1062, 1199, 1555
BceAI	ACGGC	1 cut(s)	1469
BciT130I	CCWGG	3 cut(s)	11, 322, 911
BclI	TGATCA	1 cut(s)	76
BcoDI	GTCTC	3 cut(s)	101, 240, 1249
BcuI	ACTAGT	1 cut(s)	65
BfaI	CTAG	4 cut(s)	66, 1061, 1331, 1672
BfmI	CTRYAG	3 cut(s)	666, 700, 1221
BglII	AGATCT	1 cut(s)	103
BisI	GCNGC	4 cut(s)	227, 666, 977, 1314
BlsI	GCNGC	4 cut(s)	228, 667, 978, 1315
Bme1390I	CCNGG	3 cut(s)	11, 322, 911
BmgT120I	GGNCC	2 cut(s)	997, 1564
BmiI	GGNNCC	1 cut(s)	282
BmrFI	CCNGG	3 cut(s)	11, 322, 911
BmrI	ACTGGG	1 cut(s)	1037
BmsI	GCATC	2 cut(s)	429, 1461
BmtI	GCTAGC	1 cut(s)	1334
BmuI	ACTGGG	1 cut(s)	1037
BpmI	CTGGAG	1 cut(s)	1409
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	909
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse1I	ACTGG	4 cut(s)	36, 1032, 1392, 1582
Bse3DI	GCAATG	2 cut(s)	159, 1588
BseBI	CCWGG	3 cut(s)	11, 322, 911
BseDI	CCNNGG	1 cut(s)	909
BseGI	GGATG	4 cut(s)	10, 471, 606, 1187
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseMI	GCAATG	2 cut(s)	159, 1588
BseMII	CTCAG	6 cut(s)	112, 936, 1260, 1437, 1571, 1653
BseNI	ACTGG	4 cut(s)	36, 1032, 1392, 1582
BseRI	GAGGAG	1 cut(s)	377
BseXI	GCAGC	4 cut(s)	213, 652, 963, 1325
BsgI	GTGCAG	1 cut(s)	12
Bsh1236I	CGCG	1 cut(s)	141
BshFI	GGCC	6 cut(s)	86, 466, 570, 998, 1097, 1566
BsiHKAI	GWGCWC	1 cut(s)	458
BslFI	GGGAC	2 cut(s)	1044, 1506
BslI	CCNNNNNNNGG	1 cut(s)	132
BsmAI	GTCTC	3 cut(s)	101, 240, 1249
BsmFI	GGGAC	2 cut(s)	1044, 1506
BsnI	GGCC	6 cut(s)	86, 466, 570, 998, 1097, 1566
Bso31I	GGTCTC	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	458
Bsp1407I	TGTACA	3 cut(s)	177, 217, 268
Bsp143I	GATC	4 cut(s)	76, 103, 1229, 1635
BspANI	GGCC	6 cut(s)	86, 466, 570, 998, 1097, 1566
BspCNI	CTCAG	6 cut(s)	111, 935, 1259, 1436, 1570, 1652
BspFNI	CGCG	1 cut(s)	141
BspHI	TCATGA	2 cut(s)	591, 1605
BspLI	GGNNCC	1 cut(s)	282
BspMAI	CTGCAG	1 cut(s)	670
BspOI	GCTAGC	1 cut(s)	1334
BspPI	GGATC	1 cut(s)	1237
BspTNI	GGTCTC	1 cut(s)	101
BsrDI	GCAATG	2 cut(s)	159, 1588
BsrGI	TGTACA	3 cut(s)	177, 217, 268
BsrI	ACTGG	4 cut(s)	36, 1032, 1392, 1582
BssECI	CCNNGG	1 cut(s)	909
BssMI	GATC	4 cut(s)	76, 103, 1229, 1635
BssNAI	GTATAC	1 cut(s)	1252
Bst1107I	GTATAC	1 cut(s)	1252
Bst2UI	CCWGG	3 cut(s)	11, 322, 911
Bst4CI	ACNGT	6 cut(s)	135, 146, 251, 402, 613, 1222
Bst6I	CTCTTC	2 cut(s)	1523, 1640
BstAUI	TGTACA	3 cut(s)	177, 217, 268
BstC8I	GCNNGC	4 cut(s)	568, 1332, 1509, 1513
BstF5I	GGATG	4 cut(s)	10, 471, 606, 1187
BstFNI	CGCG	1 cut(s)	141
BstHHI	GCGC	2 cut(s)	141, 1167
BstKTI	GATC	4 cut(s)	79, 106, 1232, 1638
BstMAI	GTCTC	3 cut(s)	101, 240, 1249
BstMBI	GATC	4 cut(s)	76, 103, 1229, 1635
BstMWI	GCNNNNNNNGC	3 cut(s)	973, 1322, 1331
BstNI	CCWGG	3 cut(s)	11, 322, 911
BstNSI	RCATGY	3 cut(s)	275, 554, 1515
BstSCI	CCNGG	3 cut(s)	9, 320, 909
BstSFI	CTRYAG	3 cut(s)	666, 700, 1221
BstUI	CGCG	1 cut(s)	141
BstV1I	GCAGC	4 cut(s)	213, 652, 963, 1325
BstX2I	RGATCY	1 cut(s)	103
BstXI	CCANNNNNNTGG	1 cut(s)	944
BstYI	RGATCY	1 cut(s)	103
BstZ17I	GTATAC	1 cut(s)	1252
BsuRI	GGCC	6 cut(s)	86, 466, 570, 998, 1097, 1566
BtsCI	GGATG	4 cut(s)	10, 471, 606, 1187
BtsI	GCAGTG	4 cut(s)	24, 1078, 1153, 1325
BtsIMutI	CAGTG	5 cut(s)	24, 29, 1078, 1153, 1325
Cac8I	GCNNGC	4 cut(s)	568, 1332, 1509, 1513
CciI	TCATGA	2 cut(s)	591, 1605
CfoI	GCGC	2 cut(s)	141, 1167
Cfr13I	GGNCC	2 cut(s)	997, 1564
CsiI	ACCWGGT	1 cut(s)	9
DpnI	GATC	4 cut(s)	78, 105, 1231, 1637
DpnII	GATC	4 cut(s)	76, 103, 1229, 1635
DraI	TTTAAA	1 cut(s)	1525
EaeI	YGGCCR	1 cut(s)	464
Eam1104I	CTCTTC	2 cut(s)	1523, 1640
EarI	CTCTTC	2 cut(s)	1523, 1640
Ecl136II	GAGCTC	1 cut(s)	456
Eco147I	AGGCCT	2 cut(s)	86, 570
Eco24I	GRGCYC	1 cut(s)	458
Eco31I	GGTCTC	1 cut(s)	101
Eco53kI	GAGCTC	1 cut(s)	456
EcoICRI	GAGCTC	1 cut(s)	456
EcoRII	CCWGG	3 cut(s)	9, 320, 909
EcoT38I	GRGCYC	1 cut(s)	458
FalI	AAGNNNNNCTT	4 cut(s)	789, 821, 1164, 1196
FaqI	GGGAC	2 cut(s)	1044, 1506
FbaI	TGATCA	1 cut(s)	76
FblI	GTMKAC	1 cut(s)	1251
Fnu4HI	GCNGC	4 cut(s)	227, 666, 977, 1314
FokI	GGATG	4 cut(s)	17, 458, 613, 1174
FriOI	GRGCYC	1 cut(s)	458
Fsp4HI	GCNGC	4 cut(s)	227, 666, 977, 1314
FspBI	CTAG	4 cut(s)	66, 1061, 1331, 1672
GlaI	GCGC	2 cut(s)	140, 1166
GluI	GCNGC	4 cut(s)	227, 666, 977, 1314
GsuI	CTGGAG	1 cut(s)	1409
HaeIII	GGCC	6 cut(s)	86, 466, 570, 998, 1097, 1566
HhaI	GCGC	2 cut(s)	141, 1167
Hin6I	GCGC	2 cut(s)	139, 1165
HinP1I	GCGC	2 cut(s)	139, 1165
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HindIII	AAGCTT	1 cut(s)	773
HinfI	GANTC	7 cut(s)	429, 634, 651, 780, 890, 1494, 1668
HphI	GGTGA	4 cut(s)	86, 835, 844, 1600
Hpy166II	GTNNAC	3 cut(s)	16, 191, 1252
Hpy188I	TCNGA	7 cut(s)	101, 111, 460, 925, 1044, 1560, 1642
Hpy188III	TCNNGA	5 cut(s)	259, 436, 592, 1606, 1633
Hpy8I	GTNNAC	3 cut(s)	16, 191, 1252
Hpy99I	CGWCG	3 cut(s)	146, 642, 1455
HpyAV	CCTTC	3 cut(s)	580, 721, 1529
HpyCH4III	ACNGT	6 cut(s)	135, 146, 251, 402, 613, 1222
HpyCH4IV	ACGT	1 cut(s)	528
HpyF10VI	GCNNNNNNNGC	3 cut(s)	973, 1322, 1331
HpySE526I	ACGT	1 cut(s)	528
HspAI	GCGC	2 cut(s)	139, 1165
Ksp22I	TGATCA	1 cut(s)	76
Kzo9I	GATC	4 cut(s)	76, 103, 1229, 1635
LmnI	GCTCC	2 cut(s)	364, 453
Lsp1109I	GCAGC	4 cut(s)	213, 652, 963, 1325
LweI	GCATC	2 cut(s)	429, 1461
MabI	ACCWGGT	1 cut(s)	9
MaeI	CTAG	4 cut(s)	66, 1061, 1331, 1672
MaeII	ACGT	1 cut(s)	528
MaeIII	GTNAC	4 cut(s)	289, 706, 1150, 1183
MalI	GATC	4 cut(s)	78, 105, 1231, 1637
MboI	GATC	4 cut(s)	76, 103, 1229, 1635
MboII	GAAGA	5 cut(s)	98, 437, 551, 1510, 1657
MfeI	CAATTG	2 cut(s)	961, 1621
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	1 cut(s)	458
MlsI	TGGCCA	1 cut(s)	466
MluNI	TGGCCA	1 cut(s)	466
MlyI	GAGTC	3 cut(s)	789, 1488, 1662
MmeI	TCCRAC	2 cut(s)	1035, 1207
Mox20I	TGGCCA	1 cut(s)	466
MroXI	GAANNNNTTC	2 cut(s)	650, 681
MscI	TGGCCA	1 cut(s)	466
MseI	TTAA	5 cut(s)	254, 404, 812, 1502, 1524
MslI	CAYNNNNRTG	2 cut(s)	164, 737
Msp20I	TGGCCA	1 cut(s)	466
MspA1I	CMGCKG	2 cut(s)	226, 976
MspR9I	CCNGG	3 cut(s)	11, 322, 911
MunI	CAATTG	2 cut(s)	961, 1621
MvaI	CCWGG	3 cut(s)	11, 322, 911
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	3 cut(s)	973, 1322, 1331
NdeII	GATC	4 cut(s)	76, 103, 1229, 1635
NheI	GCTAGC	1 cut(s)	1330
NlaIV	GGNNCC	1 cut(s)	282
NmuCI	GTSAC	2 cut(s)	289, 1183
NspI	RCATGY	3 cut(s)	275, 554, 1515
PaeI	GCATGC	1 cut(s)	1515
PagI	TCATGA	2 cut(s)	591, 1605
PceI	AGGCCT	2 cut(s)	86, 570
PciI	ACATGT	2 cut(s)	271, 550
PdmI	GAANNNNTTC	2 cut(s)	650, 681
PfeI	GAWTC	4 cut(s)	429, 634, 651, 890
PflFI	GACNNNGTC	1 cut(s)	11
PkrI	GCNGC	4 cut(s)	228, 667, 978, 1315
PleI	GAGTC	3 cut(s)	788, 1488, 1662
PpsI	GAGTC	3 cut(s)	788, 1488, 1662
PscI	ACATGT	2 cut(s)	271, 550
Psp124BI	GAGCTC	1 cut(s)	458
Psp6I	CCWGG	3 cut(s)	9, 320, 909
PspGI	CCWGG	3 cut(s)	9, 320, 909
PspN4I	GGNNCC	1 cut(s)	282
PspPI	GGNCC	2 cut(s)	997, 1564
PsrI	GAACNNNNNNTAC	2 cut(s)	1242, 1274
PstI	CTGCAG	1 cut(s)	670
PsuI	RGATCY	1 cut(s)	103
PsyI	GACNNNGTC	1 cut(s)	11
PvuII	CAGCTG	2 cut(s)	226, 976
RseI	CAYNNNNRTG	2 cut(s)	164, 737
SacI	GAGCTC	1 cut(s)	458
SaqAI	TTAA	5 cut(s)	254, 404, 812, 1502, 1524
SatI	GCNGC	4 cut(s)	227, 666, 977, 1314
Sau3AI	GATC	4 cut(s)	76, 103, 1229, 1635
Sau96I	GGNCC	2 cut(s)	997, 1564
SchI	GAGTC	3 cut(s)	789, 1488, 1662
ScrFI	CCNGG	3 cut(s)	11, 322, 911
SduI	GDGCHC	1 cut(s)	458
SexAI	ACCWGGT	1 cut(s)	9
SfaNI	GCATC	2 cut(s)	429, 1461
SfcI	CTRYAG	3 cut(s)	666, 700, 1221
SmiMI	CAYNNNNRTG	2 cut(s)	164, 737
SpeI	ACTAGT	1 cut(s)	65
SphI	GCATGC	1 cut(s)	1515
SseBI	AGGCCT	2 cut(s)	86, 570
SspI	AATATT	2 cut(s)	184, 681
SspMI	CTAG	4 cut(s)	66, 1061, 1331, 1672
SstI	GAGCTC	1 cut(s)	458
StuI	AGGCCT	2 cut(s)	86, 570
StyD4I	CCNGG	3 cut(s)	9, 320, 909
TaaI	ACNGT	6 cut(s)	135, 146, 251, 402, 613, 1222
TaiI	ACGT	1 cut(s)	531
TaqI	TCGA	2 cut(s)	624, 1089
TatI	WGTACW	8 cut(s)	177, 217, 268, 312, 536, 838, 1217, 1574
TfiI	GAWTC	4 cut(s)	429, 634, 651, 890
Tru1I	TTAA	5 cut(s)	254, 404, 812, 1502, 1524
Tru9I	TTAA	5 cut(s)	254, 404, 812, 1502, 1524
TscAI	CASTG	5 cut(s)	31, 36, 1078, 1153, 1332
TseFI	GTSAC	2 cut(s)	289, 1183
TseI	GCWGC	4 cut(s)	226, 665, 976, 1313
Tsp45I	GTSAC	2 cut(s)	289, 1183
TspDTI	ATGAA	6 cut(s)	148, 203, 422, 903, 1548, 1594
TspGWI	ACGGA	1 cut(s)	337
TspRI	CASTG	5 cut(s)	31, 36, 1078, 1153, 1332
Tth111I	GACNNNGTC	1 cut(s)	11
XapI	RAATTY	1 cut(s)	940
XceI	RCATGY	3 cut(s)	275, 554, 1515
XcmI	CCANNNNNNNNNTGG	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	1251
XmnI	GAANNNNTTC	2 cut(s)	650, 681
XspI	CTAG	4 cut(s)	66, 1061, 1331, 1672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.