Rh5BG057700

Stem-specific protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0017260
Physical Location & Seq
Reverse (-)
4723157 .. 4724472
1316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG057700.1

Sequence Viewer

Length: 768 bp
ATGCTTGCTATATTCAACAAGGAAGTGGTGCAGCCACCACAGGAGCTCAACAGCCCCGCCACGCCGTCGGCCAAGAAGCCGAAGCATCCTCAGGAGATTGTGAAGGATTTCATGTCATGCCATGATGCCAATAATGCTTTCTCTGTTTGCTTTGGAAACAAGTCGTTGCTCGCTTATGTTCGGCCACAAAATTCCTTCTCCATGAATCAGAGGTTGTTCTGTTCTTTGGATAACATATACTGCGTTTTCTTGGGGAGCCTGAACAACCTCAGCAGCCTGATCAAGCAATATGGGCTTTCAAAGAGCACCAATGAGGCCATGTTTGTGGTGCAGGCTTATCGGACCCTCCGTGACCGGGGTCCATACCCAGCCGATCAGGTCCTCAAAGATCTGGACGGCAGCTTCGGATTTGTGATCTATGACACCAAGGCTGGAACTGTTTTTGCTTCCTTGGATGCTAATGAAGGAGTTAGCCTATATTGGGGGATTGCAGCAGATGGCTCCGTCGTGATTTCCGACAACTTGGGGGTCATAAAGGAAAGCTGTTCCAAGTCCTTTGCTCCATTCCCAACTGGGTGCATGTTCCACAGTGAGCAGGGACTGATGAGCTTTGAGCACCCAACAAGGAAGATGAAGGCAATGCCTAGGATTGATAGTGAGGGCGTCATGTGTGGAGCCAACTTCAAGGCTGATGCCCAATCAAAGATTCACAATATGCCACGTGTTGGAAGTGAAGCCAACTGGGCAGCTTGGGGGCAACAAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3700

Protein Analysis

255

Amino Acids

28.03

Weight (kDa)

7.58

Isoelectric Point (pI)

38.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3700 PF12481 2 - 229 2.8e-102 Aluminium induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g04880
malus_domestica MD05G1315200.v1.1 MD10G1296500.v1.1
prunus_persica Prupe.4G044100_v2.0.a1
pyrus_communis pycom05g29280
rosa_chinensis RchiOBHm_Chr5g0008041
rosa_laevigata RLG00000031530
rosa_multiflora Rmu_sc0007348.1_g000001
rosa_rugosa Rorug04G0432900
rosa_samantha Rh5AG060900 Rh5BG057700 Rh5DG056900
rosa_wichuraiana Rw5G005970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 725
AciI CCGC 1 cut(s) 57
AcoI YGGCCR 2 cut(s) 69, 182
AcsI RAATTY 1 cut(s) 190
AcvI CACGTG 1 cut(s) 722
AcyI GRCGYC 1 cut(s) 663
AfiI CCNNNNNNNGG 3 cut(s) 355, 481, 725
AflIII ACRYGT 1 cut(s) 721
AgsI TTSAA 3 cut(s) 16, 300, 685
AjuI GAANNNNNNNTTGG 4 cut(s) 122, 154, 690, 722
AluBI AGCT 5 cut(s) 46, 402, 543, 609, 749
AluI AGCT 5 cut(s) 46, 402, 543, 609, 749
Alw21I GWGCWC 3 cut(s) 48, 308, 618
AlwNI CAGNNNCTG 1 cut(s) 601
AoxI GGCC 3 cut(s) 69, 182, 315
ApeKI GCWGC 5 cut(s) 31, 273, 399, 491, 746
ApoI RAATTY 1 cut(s) 190
ArsI GACNNNNNNTTYG 2 cut(s) 386, 418
Asp700I GAANNNNTTC 1 cut(s) 107
AspA2I CCTAGG 1 cut(s) 644
AspS9I GGNCC 3 cut(s) 342, 359, 379
AsuC2I CCSGG 1 cut(s) 356
AvaII GGWCC 3 cut(s) 342, 359, 379
AvrII CCTAGG 1 cut(s) 644
AxyI CCTNAGG 1 cut(s) 90
BanII GRGCYC 1 cut(s) 48
BbrPI CACGTG 1 cut(s) 722
Bbv12I GWGCWC 3 cut(s) 48, 308, 618
BbvCI CCTCAGC 1 cut(s) 269
BbvI GCAGC 5 cut(s) 43, 285, 411, 503, 758
BccI CCATC 1 cut(s) 491
BceAI ACGGC 2 cut(s) 49, 412
BcgI CGANNNNNNTGC 2 cut(s) 320, 354
BclI TGATCA 1 cut(s) 279
BcnI CCSGG 1 cut(s) 356
BfaI CTAG 2 cut(s) 645, 766
BglI GCCNNNNNGGC 1 cut(s) 743
BglII AGATCT 1 cut(s) 388
BisI GCNGC 5 cut(s) 32, 274, 400, 492, 747
BlnI CCTAGG 1 cut(s) 644
BlsI GCNGC 5 cut(s) 33, 275, 401, 493, 748
Bme1390I CCNGG 1 cut(s) 356
Bme18I GGWCC 3 cut(s) 342, 359, 379
BmgT120I GGNCC 3 cut(s) 342, 359, 379
BmiI GGNNCC 5 cut(s) 257, 344, 360, 502, 676
BmrFI CCNGG 1 cut(s) 356
BmrI ACTGGG 2 cut(s) 582, 751
BmsI GCATC 4 cut(s) 94, 115, 445, 682
BmuI ACTGGG 2 cut(s) 582, 751
BoxI GACNNNNGTC 1 cut(s) 357
Bpu10I CCTNAGC 1 cut(s) 269
BpuMI CCSGG 1 cut(s) 356
BsaAI YACGTR 1 cut(s) 722
BsaHI GRCGYC 1 cut(s) 663
BsaJI CCNNGG 4 cut(s) 355, 426, 450, 644
Bsc4I CCNNNNNNNGG 3 cut(s) 355, 481, 725
Bse1I ACTGG 2 cut(s) 577, 746
Bse21I CCTNAGG 1 cut(s) 90
Bse3DI GCAATG 1 cut(s) 645
BseDI CCNNGG 4 cut(s) 355, 426, 450, 644
BseGI GGATG 2 cut(s) 85, 460
BseLI CCNNNNNNNGG 3 cut(s) 355, 481, 725
BseMI GCAATG 1 cut(s) 645
BseMII CTCAG 2 cut(s) 104, 283
BseNI ACTGG 2 cut(s) 577, 746
BseXI GCAGC 5 cut(s) 43, 285, 411, 503, 758
BseYI CCCAGC 1 cut(s) 367
BsgI GTGCAG 2 cut(s) 50, 350
BshFI GGCC 3 cut(s) 71, 184, 317
BsiHKAI GWGCWC 3 cut(s) 48, 308, 618
BsiSI CCGG 1 cut(s) 355
BslFI GGGAC 1 cut(s) 612
BslI CCNNNNNNNGG 3 cut(s) 355, 481, 725
BsmFI GGGAC 1 cut(s) 612
BsnI GGCC 3 cut(s) 71, 184, 317
Bsp1286I GDGCHC 3 cut(s) 48, 308, 618
Bsp143I GATC 4 cut(s) 279, 373, 388, 414
BspACI CCGC 1 cut(s) 57
BspANI GGCC 3 cut(s) 71, 184, 317
BspCNI CTCAG 2 cut(s) 103, 282
BspLI GGNNCC 5 cut(s) 257, 344, 360, 502, 676
BsrDI GCAATG 1 cut(s) 645
BsrI ACTGG 2 cut(s) 577, 746
BssECI CCNNGG 4 cut(s) 355, 426, 450, 644
BssMI GATC 4 cut(s) 279, 373, 388, 414
BssNI GRCGYC 1 cut(s) 663
BssT1I CCWWGG 3 cut(s) 426, 450, 644
Bst4CI ACNGT 2 cut(s) 439, 590
BstACI GRCGYC 1 cut(s) 663
BstBAI YACGTR 1 cut(s) 722
BstC8I GCNNGC 3 cut(s) 6, 171, 333
BstDEI CTNAG 2 cut(s) 90, 269
BstF5I GGATG 2 cut(s) 85, 460
BstKTI GATC 4 cut(s) 282, 376, 391, 417
BstMBI GATC 4 cut(s) 279, 373, 388, 414
BstMWI GCNNNNNNNGC 3 cut(s) 134, 292, 743
BstNSI RCATGY 1 cut(s) 583
BstPAI GACNNNNGTC 1 cut(s) 357
BstSCI CCNGG 1 cut(s) 354
BstV1I GCAGC 5 cut(s) 43, 285, 411, 503, 758
BstX2I RGATCY 1 cut(s) 388
BstXI CCANNNNNNTGG 1 cut(s) 325
BstYI RGATCY 1 cut(s) 388
Bsu36I CCTNAGG 1 cut(s) 90
BsuRI GGCC 3 cut(s) 71, 184, 317
BtsCI GGATG 2 cut(s) 85, 460
BtsIMutI CAGTG 1 cut(s) 595
Cac8I GCNNGC 3 cut(s) 6, 171, 333
CaiI CAGNNNCTG 1 cut(s) 601
Cfr13I GGNCC 3 cut(s) 342, 359, 379
CseI GACGC 1 cut(s) 652
CviAII CATG 7 cut(s) 112, 117, 122, 202, 319, 580, 667
DdeI CTNAG 2 cut(s) 90, 269
DpnI GATC 4 cut(s) 281, 375, 390, 416
DpnII GATC 4 cut(s) 279, 373, 388, 414
EaeI YGGCCR 2 cut(s) 69, 182
Ecl136II GAGCTC 1 cut(s) 46
Eco130I CCWWGG 3 cut(s) 426, 450, 644
Eco24I GRGCYC 1 cut(s) 48
Eco47I GGWCC 3 cut(s) 342, 359, 379
Eco53kI GAGCTC 1 cut(s) 46
Eco72I CACGTG 1 cut(s) 722
Eco81I CCTNAGG 1 cut(s) 90
EcoICRI GAGCTC 1 cut(s) 46
EcoO109I RGGNCCY 1 cut(s) 379
EcoT14I CCWWGG 3 cut(s) 426, 450, 644
EcoT38I GRGCYC 1 cut(s) 48
ErhI CCWWGG 3 cut(s) 426, 450, 644
FaeI CATG 7 cut(s) 115, 120, 125, 205, 322, 583, 670
FaqI GGGAC 1 cut(s) 612
FatI CATG 7 cut(s) 111, 116, 121, 201, 318, 579, 666
FauI CCCGC 1 cut(s) 64
FbaI TGATCA 1 cut(s) 279
Fnu4HI GCNGC 5 cut(s) 32, 274, 400, 492, 747
FokI GGATG 2 cut(s) 72, 467
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 5 cut(s) 32, 274, 400, 492, 747
FspBI CTAG 2 cut(s) 645, 766
GluI GCNGC 5 cut(s) 32, 274, 400, 492, 747
GsaI CCCAGC 1 cut(s) 371
HaeIII GGCC 3 cut(s) 71, 184, 317
HapII CCGG 1 cut(s) 355
HgaI GACGC 1 cut(s) 652
Hin1I GRCGYC 1 cut(s) 663
Hin1II CATG 7 cut(s) 115, 120, 125, 205, 322, 583, 670
HinfI GANTC 2 cut(s) 205, 706
HpaII CCGG 1 cut(s) 355
Hpy188I TCNGA 4 cut(s) 210, 342, 407, 517
Hpy188III TCNNGA 3 cut(s) 92, 392, 508
Hpy99I CGWCG 2 cut(s) 70, 509
HpyAV CCTTC 4 cut(s) 97, 205, 458, 628
HpyCH4III ACNGT 2 cut(s) 439, 590
HpyCH4IV ACGT 1 cut(s) 721
HpyCH4V TGCA 4 cut(s) 31, 331, 491, 579
HpyF10VI GCNNNNNNNGC 3 cut(s) 134, 292, 743
HpyF3I CTNAG 2 cut(s) 90, 269
HpySE526I ACGT 1 cut(s) 721
Hsp92I GRCGYC 1 cut(s) 663
Hsp92II CATG 7 cut(s) 115, 120, 125, 205, 322, 583, 670
Ksp22I TGATCA 1 cut(s) 279
Kzo9I GATC 4 cut(s) 279, 373, 388, 414
LmnI GCTCC 5 cut(s) 43, 255, 506, 565, 674
Lsp1109I GCAGC 5 cut(s) 43, 285, 411, 503, 758
LweI GCATC 4 cut(s) 94, 115, 445, 682
MaeI CTAG 2 cut(s) 645, 766
MaeII ACGT 1 cut(s) 721
MaeIII GTNAC 1 cut(s) 350
MalI GATC 4 cut(s) 281, 375, 390, 416
MboI GATC 4 cut(s) 279, 373, 388, 414
MboII GAAGA 1 cut(s) 640
MflI RGATCY 1 cut(s) 388
MhlI GDGCHC 3 cut(s) 48, 308, 618
MluCI AATT 1 cut(s) 190
MmeI TCCRAC 2 cut(s) 540, 706
MnlI CCTC 7 cut(s) 99, 204, 278, 307, 356, 392, 652
MroXI GAANNNNTTC 1 cut(s) 107
MslI CAYNNNNRTG 1 cut(s) 323
MspI CCGG 1 cut(s) 355
MspR9I CCNGG 1 cut(s) 356
MwoI GCNNNNNNNGC 3 cut(s) 134, 292, 743
NciI CCSGG 1 cut(s) 356
NdeII GATC 4 cut(s) 279, 373, 388, 414
NlaIII CATG 7 cut(s) 115, 120, 125, 205, 322, 583, 670
NlaIV GGNNCC 5 cut(s) 257, 344, 360, 502, 676
NmuCI GTSAC 1 cut(s) 350
NspI RCATGY 1 cut(s) 583
PcsI WCGNNNNNNNCGW 2 cut(s) 346, 513
PdmI GAANNNNTTC 1 cut(s) 107
PfeI GAWTC 2 cut(s) 205, 706
PflMI CCANNNNNTGG 1 cut(s) 725
PkrI GCNGC 5 cut(s) 33, 275, 401, 493, 748
PmaCI CACGTG 1 cut(s) 722
PmlI CACGTG 1 cut(s) 722
Ppu21I YACGTR 1 cut(s) 722
PpuMI RGGWCCY 1 cut(s) 379
PshAI GACNNNNGTC 1 cut(s) 357
Psp124BI GAGCTC 1 cut(s) 48
Psp5II RGGWCCY 1 cut(s) 379
PspCI CACGTG 1 cut(s) 722
PspFI CCCAGC 1 cut(s) 367
PspN4I GGNNCC 5 cut(s) 257, 344, 360, 502, 676
PspPI GGNCC 3 cut(s) 342, 359, 379
PspPPI RGGWCCY 1 cut(s) 379
PstNI CAGNNNCTG 1 cut(s) 601
PsuI RGATCY 1 cut(s) 388
RseI CAYNNNNRTG 1 cut(s) 323
SacI GAGCTC 1 cut(s) 48
SatI GCNGC 5 cut(s) 32, 274, 400, 492, 747
Sau3AI GATC 4 cut(s) 279, 373, 388, 414
Sau96I GGNCC 3 cut(s) 342, 359, 379
ScrFI CCNGG 1 cut(s) 356
SduI GDGCHC 3 cut(s) 48, 308, 618
SetI ASST 9 cut(s) 48, 215, 270, 381, 404, 545, 611, 724, 751
SfaNI GCATC 4 cut(s) 94, 115, 445, 682
SinI GGWCC 3 cut(s) 342, 359, 379
SmiMI CAYNNNNRTG 1 cut(s) 323
Sse9I AATT 1 cut(s) 190
SsiI CCGC 1 cut(s) 57
SspMI CTAG 2 cut(s) 645, 766
SstI GAGCTC 1 cut(s) 48
StyD4I CCNGG 1 cut(s) 354
StyI CCWWGG 3 cut(s) 426, 450, 644
TaaI ACNGT 2 cut(s) 439, 590
TaiI ACGT 1 cut(s) 724
TasI AATT 1 cut(s) 190
TfiI GAWTC 2 cut(s) 205, 706
TscAI CASTG 1 cut(s) 595
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 5 cut(s) 31, 273, 399, 491, 746
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 4 cut(s) 100, 218, 477, 647
TspGWI ACGGA 2 cut(s) 338, 493
TspRI CASTG 1 cut(s) 595
Van91I CCANNNNNTGG 1 cut(s) 725
VpaK11BI GGWCC 3 cut(s) 342, 359, 379
XapI RAATTY 1 cut(s) 190
XceI RCATGY 1 cut(s) 583
XmaJI CCTAGG 1 cut(s) 644
XmnI GAANNNNTTC 1 cut(s) 107
XspI CTAG 2 cut(s) 645, 766
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.