Prupe.4G044100_v2.0.a1

Stem-specific protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0017260
Physical Location & Seq
Reverse (-)
2120171 .. 2121742
1572 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G044100.1

Sequence Viewer

Length: 768 bp
ATGCTTGCAATATTCAACAAGGAAGTGGTGCAGCCACCACAGGAGCTCAACAGCCCTGCCCCATCCAATTCTGCCAAGAGGCCTCAAGAGATTGTCAAAGATTTCATGTCTTGCCATGATCCCAACAATGCTTTCTCTGTCTGCTTCGGAAACACAGCAATGCTCGCCTATGTTCCTCCAAACAACCCCTACCCGATTCAACAGAGGCTGTTTTGTTCTTTGGATAATATATACTGCATTTTCTTGGGGAGCCTGAACAATCTTTGCAGCCTGAACAAGCAGTACGGGCTATCCAAATGCACCAATGAGGCCATGTTTGTGATGCAGGCCTATCGGACCCTCCGTGACCGGGGCCCATACCCGGCGGATCAGGTGCTCAAGGATCTTGATGGAAGCTTTGGATTTGTCATCTACGATAGCACGGCTGGAACCGTATTTGCTGCATTGGGTGCCAATGAAGAGGTTAGCCTATTTTGGGGCATTGCAGCAGATGGCTCTGTTGTAGTTTCTGACAACTTGGGGGTCATAAAAGGAAGCTGTGCTAAATCCTTTGCTCCATTTCCAGCTGGATGCATGTTCCACAGTGAGCAAGGGTTGATGAGCTTTGAGCATCCAACCAGGAAGATGAAGGCAATGCCTAGGATTGACAGTGAGGGGGTCATGTGTGGGGCCAATTTCAAGGTTGATGTCCAATCAAGGGTCCCCAACATGCCACGTGTCGGCAGTGAAGCCAACTGGGCAACATGGGGTCCAAGCTCACCAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3700

Protein Analysis

256

Amino Acids

27.82

Weight (kDa)

5.92

Isoelectric Point (pI)

48.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g04880
malus_domestica MD05G1315200.v1.1 MD10G1296500.v1.1
prunus_persica Prupe.4G044100_v2.0.a1
pyrus_communis pycom05g29280
rosa_chinensis RchiOBHm_Chr5g0008041
rosa_laevigata RLG00000031530
rosa_multiflora Rmu_sc0007348.1_g000001
rosa_rugosa Rorug04G0432900
rosa_samantha Rh5AG060900 Rh5BG057700 Rh5DG056900
rosa_wichuraiana Rw5G005970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 449
AciI CCGC 1 cut(s) 365
AclWI GGATC 3 cut(s) 113, 375, 390
AcvI CACGTG 1 cut(s) 716
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 5 cut(s) 349, 361, 475, 697, 719
AflIII ACRYGT 1 cut(s) 715
AgsI TTSAA 3 cut(s) 16, 200, 679
AjnI CCWGG 1 cut(s) 617
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
AluBI AGCT 6 cut(s) 46, 396, 537, 566, 603, 756
AluI AGCT 6 cut(s) 46, 396, 537, 566, 603, 756
Alw21I GWGCWC 2 cut(s) 48, 378
AlwI GGATC 3 cut(s) 113, 375, 390
AlwNI CAGNNNCTG 1 cut(s) 208
AoxI GGCC 5 cut(s) 80, 309, 327, 352, 669
ApaI GGGCCC 1 cut(s) 356
ApeKI GCWGC 4 cut(s) 31, 267, 440, 485
AspA2I CCTAGG 1 cut(s) 638
AspS9I GGNCC 6 cut(s) 336, 352, 353, 669, 700, 749
AsuC2I CCSGG 2 cut(s) 350, 362
AsuHPI GGTGA 1 cut(s) 750
AvaII GGWCC 3 cut(s) 336, 700, 749
AvrII CCTAGG 1 cut(s) 638
BaeGI GKGCMC 1 cut(s) 356
BanI GGYRCC 1 cut(s) 449
BanII GRGCYC 2 cut(s) 48, 356
BbrPI CACGTG 1 cut(s) 716
Bbv12I GWGCWC 2 cut(s) 48, 378
BbvI GCAGC 4 cut(s) 43, 279, 427, 497
BccI CCATC 3 cut(s) 70, 383, 485
BceAI ACGGC 1 cut(s) 438
BcgI CGANNNNNNTGC 2 cut(s) 314, 348
BciT130I CCWGG 1 cut(s) 619
BcnI CCSGG 2 cut(s) 350, 362
BfaI CTAG 1 cut(s) 639
BglI GCCNNNNNGGC 1 cut(s) 737
BisI GCNGC 4 cut(s) 32, 268, 441, 486
BlnI CCTAGG 1 cut(s) 638
BlsI GCNGC 4 cut(s) 33, 269, 442, 487
Bme1390I CCNGG 3 cut(s) 350, 362, 619
Bme18I GGWCC 3 cut(s) 336, 700, 749
BmgT120I GGNCC 6 cut(s) 336, 352, 353, 669, 700, 749
BmrFI CCNGG 3 cut(s) 350, 362, 619
BmrI ACTGGG 1 cut(s) 745
BmsI GCATC 3 cut(s) 312, 560, 619
BmuI ACTGGG 1 cut(s) 745
BpuEI CTTGAG 2 cut(s) 69, 362
BpuMI CCSGG 2 cut(s) 350, 362
BsaAI YACGTR 1 cut(s) 716
BsaJI CCNNGG 2 cut(s) 349, 638
Bsc4I CCNNNNNNNGG 5 cut(s) 349, 361, 475, 697, 719
Bse1I ACTGG 1 cut(s) 740
Bse3DI GCAATG 3 cut(s) 165, 480, 639
BseBI CCWGG 1 cut(s) 619
BseDI CCNNGG 2 cut(s) 349, 638
BseGI GGATG 3 cut(s) 62, 575, 610
BseLI CCNNNNNNNGG 5 cut(s) 349, 361, 475, 697, 719
BseMI GCAATG 3 cut(s) 165, 480, 639
BseNI ACTGG 1 cut(s) 740
BseSI GKGCMC 1 cut(s) 356
BseXI GCAGC 4 cut(s) 43, 279, 427, 497
BsgI GTGCAG 1 cut(s) 50
BshFI GGCC 5 cut(s) 82, 311, 329, 354, 671
BshNI GGYRCC 1 cut(s) 449
BsiHKAI GWGCWC 2 cut(s) 48, 378
BsiSI CCGG 2 cut(s) 349, 362
BslFI GGGAC 1 cut(s) 686
BslI CCNNNNNNNGG 5 cut(s) 349, 361, 475, 697, 719
BsmFI GGGAC 1 cut(s) 686
BsnI GGCC 5 cut(s) 82, 311, 329, 354, 671
Bsp120I GGGCCC 1 cut(s) 352
Bsp1286I GDGCHC 3 cut(s) 48, 356, 378
Bsp143I GATC 3 cut(s) 118, 367, 382
BspACI CCGC 1 cut(s) 365
BspANI GGCC 5 cut(s) 82, 311, 329, 354, 671
BspPI GGATC 3 cut(s) 113, 375, 390
BspT107I GGYRCC 1 cut(s) 449
BsrDI GCAATG 3 cut(s) 165, 480, 639
BsrI ACTGG 1 cut(s) 740
BssECI CCNNGG 2 cut(s) 349, 638
BssMI GATC 3 cut(s) 118, 367, 382
BssT1I CCWWGG 1 cut(s) 638
Bst2UI CCWGG 1 cut(s) 619
Bst4CI ACNGT 3 cut(s) 433, 584, 650
Bst6I CTCTTC 1 cut(s) 453
BstAPI GCANNNNNTGC 1 cut(s) 449
BstBAI YACGTR 1 cut(s) 716
BstC8I GCNNGC 3 cut(s) 6, 165, 327
BstF5I GGATG 3 cut(s) 62, 575, 610
BstKTI GATC 3 cut(s) 121, 370, 385
BstMBI GATC 3 cut(s) 118, 367, 382
BstMWI GCNNNNNNNGC 4 cut(s) 164, 286, 449, 737
BstNI CCWGG 1 cut(s) 619
BstNSI RCATGY 2 cut(s) 577, 712
BstSCI CCNGG 3 cut(s) 348, 360, 617
BstSLI GKGCMC 1 cut(s) 356
BstV1I GCAGC 4 cut(s) 43, 279, 427, 497
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
BsuRI GGCC 5 cut(s) 82, 311, 329, 354, 671
BtsCI GGATG 3 cut(s) 62, 575, 610
BtsI GCAGTG 1 cut(s) 730
BtsIMutI CAGTG 3 cut(s) 589, 655, 730
Cac8I GCNNGC 3 cut(s) 6, 165, 327
CaiI CAGNNNCTG 1 cut(s) 208
Cfr13I GGNCC 6 cut(s) 336, 352, 353, 669, 700, 749
Csp6I GTAC 1 cut(s) 283
CviAII CATG 7 cut(s) 106, 116, 313, 574, 661, 709, 744
CviQI GTAC 1 cut(s) 283
DpnI GATC 3 cut(s) 120, 369, 384
DpnII GATC 3 cut(s) 118, 367, 382
Eam1104I CTCTTC 1 cut(s) 453
EarI CTCTTC 1 cut(s) 453
EciI GGCGGA 1 cut(s) 380
Ecl136II GAGCTC 1 cut(s) 46
Eco130I CCWWGG 1 cut(s) 638
Eco147I AGGCCT 2 cut(s) 82, 329
Eco24I GRGCYC 2 cut(s) 48, 356
Eco47I GGWCC 3 cut(s) 336, 700, 749
Eco53kI GAGCTC 1 cut(s) 46
Eco72I CACGTG 1 cut(s) 716
EcoICRI GAGCTC 1 cut(s) 46
EcoO109I RGGNCCY 2 cut(s) 352, 700
EcoRII CCWGG 1 cut(s) 617
EcoT14I CCWWGG 1 cut(s) 638
EcoT22I ATGCAT 1 cut(s) 575
EcoT38I GRGCYC 2 cut(s) 48, 356
ErhI CCWWGG 1 cut(s) 638
FaeI CATG 7 cut(s) 109, 119, 316, 577, 664, 712, 747
FaqI GGGAC 1 cut(s) 686
FatI CATG 7 cut(s) 105, 115, 312, 573, 660, 708, 743
Fnu4HI GCNGC 4 cut(s) 32, 268, 441, 486
FokI GGATG 3 cut(s) 49, 582, 597
FriOI GRGCYC 2 cut(s) 48, 356
Fsp4HI GCNGC 4 cut(s) 32, 268, 441, 486
FspBI CTAG 1 cut(s) 639
GluI GCNGC 4 cut(s) 32, 268, 441, 486
HaeIII GGCC 5 cut(s) 82, 311, 329, 354, 671
HapII CCGG 2 cut(s) 349, 362
Hin1II CATG 7 cut(s) 109, 119, 316, 577, 664, 712, 747
HindIII AAGCTT 1 cut(s) 394
HinfI GANTC 1 cut(s) 196
HpaII CCGG 2 cut(s) 349, 362
HphI GGTGA 1 cut(s) 750
Hpy188I TCNGA 3 cut(s) 149, 336, 511
Hpy188III TCNNGA 2 cut(s) 86, 386
HpyAV CCTTC 1 cut(s) 622
HpyCH4III ACNGT 3 cut(s) 433, 584, 650
HpyCH4IV ACGT 1 cut(s) 715
HpyCH4V TGCA 9 cut(s) 8, 31, 237, 267, 300, 325, 443, 485, 573
HpyF10VI GCNNNNNNNGC 4 cut(s) 164, 286, 449, 737
HpySE526I ACGT 1 cut(s) 715
Hsp92II CATG 7 cut(s) 109, 119, 316, 577, 664, 712, 747
KflI GGGWCCC 1 cut(s) 700
Kzo9I GATC 3 cut(s) 118, 367, 382
LmnI GCTCC 3 cut(s) 43, 249, 559
Lsp1109I GCAGC 4 cut(s) 43, 279, 427, 497
LweI GCATC 3 cut(s) 312, 560, 619
MaeI CTAG 1 cut(s) 639
MaeII ACGT 1 cut(s) 715
MaeIII GTNAC 1 cut(s) 344
MalI GATC 3 cut(s) 120, 369, 384
MboI GATC 3 cut(s) 118, 367, 382
MboII GAAGA 2 cut(s) 470, 634
MflI RGATCY 1 cut(s) 382
MhlI GDGCHC 3 cut(s) 48, 356, 378
MluCI AATT 2 cut(s) 67, 673
MmeI TCCRAC 1 cut(s) 638
MnlI CCTC 8 cut(s) 72, 93, 186, 198, 301, 350, 454, 646
Mph1103I ATGCAT 1 cut(s) 575
MslI CAYNNNNRTG 2 cut(s) 158, 317
MspA1I CMGCKG 1 cut(s) 566
MspI CCGG 2 cut(s) 349, 362
MspR9I CCNGG 3 cut(s) 350, 362, 619
MvaI CCWGG 1 cut(s) 619
MwoI GCNNNNNNNGC 4 cut(s) 164, 286, 449, 737
NciI CCSGG 2 cut(s) 350, 362
NdeII GATC 3 cut(s) 118, 367, 382
NlaIII CATG 7 cut(s) 109, 119, 316, 577, 664, 712, 747
NmuCI GTSAC 1 cut(s) 344
NsiI ATGCAT 1 cut(s) 575
NspI RCATGY 2 cut(s) 577, 712
PceI AGGCCT 2 cut(s) 82, 329
PcsI WCGNNNNNNNCGW 1 cut(s) 340
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 4 cut(s) 33, 269, 442, 487
PmaCI CACGTG 1 cut(s) 716
PmlI CACGTG 1 cut(s) 716
Ppu21I YACGTR 1 cut(s) 716
PpuMI RGGWCCY 1 cut(s) 700
Psp124BI GAGCTC 1 cut(s) 48
Psp5II RGGWCCY 1 cut(s) 700
Psp6I CCWGG 1 cut(s) 617
PspCI CACGTG 1 cut(s) 716
PspGI CCWGG 1 cut(s) 617
PspOMI GGGCCC 1 cut(s) 352
PspPI GGNCC 6 cut(s) 336, 352, 353, 669, 700, 749
PspPPI RGGWCCY 1 cut(s) 700
PsrI GAACNNNNNNTAC 2 cut(s) 266, 298
PstNI CAGNNNCTG 1 cut(s) 208
PsuI RGATCY 1 cut(s) 382
PvuII CAGCTG 1 cut(s) 566
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
RseI CAYNNNNRTG 2 cut(s) 158, 317
SacI GAGCTC 1 cut(s) 48
SatI GCNGC 4 cut(s) 32, 268, 441, 486
Sau3AI GATC 3 cut(s) 118, 367, 382
Sau96I GGNCC 6 cut(s) 336, 352, 353, 669, 700, 749
ScrFI CCNGG 3 cut(s) 350, 362, 619
SduI GDGCHC 3 cut(s) 48, 356, 378
SfaNI GCATC 3 cut(s) 312, 560, 619
SinI GGWCC 3 cut(s) 336, 700, 749
SmiMI CAYNNNNRTG 2 cut(s) 158, 317
SmlI CTYRAG 2 cut(s) 84, 377
SmoI CTYRAG 2 cut(s) 84, 377
Sse9I AATT 2 cut(s) 67, 673
SseBI AGGCCT 2 cut(s) 82, 329
SsiI CCGC 1 cut(s) 365
SspI AATATT 1 cut(s) 12
SspMI CTAG 1 cut(s) 639
SstI GAGCTC 1 cut(s) 48
StuI AGGCCT 2 cut(s) 82, 329
StyD4I CCNGG 3 cut(s) 348, 360, 617
StyI CCWWGG 1 cut(s) 638
TaaI ACNGT 3 cut(s) 433, 584, 650
TaiI ACGT 1 cut(s) 718
TasI AATT 2 cut(s) 67, 673
TfiI GAWTC 1 cut(s) 196
TscAI CASTG 3 cut(s) 589, 655, 730
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 4 cut(s) 31, 267, 440, 485
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 3 cut(s) 94, 471, 641
TspGWI ACGGA 1 cut(s) 332
TspRI CASTG 3 cut(s) 589, 655, 730
VpaK11BI GGWCC 3 cut(s) 336, 700, 749
XceI RCATGY 2 cut(s) 577, 712
XmaJI CCTAGG 1 cut(s) 638
XspI CTAG 1 cut(s) 639
Zsp2I ATGCAT 1 cut(s) 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.