Rh5DG056900

Stem-specific protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0017260
Physical Location & Seq
Reverse (-)
4865569 .. 4867081
1513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG056900.1

Sequence Viewer

Length: 768 bp
ATGCTTGCTATATTCAACAAGGAAGTGGTGCAGCCACCGCAGGAGCTCAACAGCCCGGCCACGCCGTCGGCCAAGAAGCCGAAGCATCCTCAGGAGATTGTGAAGGATTTCATGTCATGCCATGATGCCAATAATGCTTTCTCTGTTTGCTTTGGAAACAAGTCGTTGCTCGCTTATGTTCGGCCACAAAATTCCTTCTCCATGAATCAGAGGTTGTTCTGTTCTTTGGACAACATATACTGCGTTTTCTTGGGGAGCCTGAACAACCTCAGCAGCCTGATCAAGCAATATGGGCTTTCAAAGGGCACCAATGAGGCCATGTTTGTGGTGCAGGCTTATCGGACCCTCCGTGACCGGGGTCCATACCCGGCCGATCAGGTCCTCAAGGATCTGGACGGCAGCTTCGGATTTGTGATCTATGACACCAAGGCTGGAACTGTTTTTGCTTCCTTGGATGCTAATGAAGGAGTTAGCCTATATTGGGGGATTGCAGCAGATGGCTCCGTCGTGATTTCCGACAACTTGGGGGTCATAAAGGAAAGCTGTTCCAAGTCCTTTGCTCCATTCCCAACTGGGTGCATGTTCCACAGTGAGCAGGGACTGATGAGCTTTGAGCACCCAACAAGGAAGATGAAGGCAATGCCTAGGATTGATAGTGAGGGGGTCATGTGTGGGGCTAACTTCAAGGCGGATGCCCAATCAAAGATTCACAATATGCCACGTGTTGGAAGTGAAGCCAACTGGGCTGCTTGGGGACAACAAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3700

Protein Analysis

255

Amino Acids

28.0

Weight (kDa)

7.58

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3700 PF12481 2 - 229 3e-102 Aluminium induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g04880
malus_domestica MD05G1315200.v1.1 MD10G1296500.v1.1
prunus_persica Prupe.4G044100_v2.0.a1
pyrus_communis pycom05g29280
rosa_chinensis RchiOBHm_Chr5g0008041
rosa_laevigata RLG00000031530
rosa_multiflora Rmu_sc0007348.1_g000001
rosa_rugosa Rorug04G0432900
rosa_samantha Rh5AG060900 Rh5BG057700 Rh5DG056900
rosa_wichuraiana Rw5G005970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 305
AccB7I CCANNNNNTGG 1 cut(s) 725
AciI CCGC 2 cut(s) 38, 689
AclWI GGATC 1 cut(s) 396
AcoI YGGCCR 4 cut(s) 57, 69, 182, 369
AcsI RAATTY 1 cut(s) 190
AcvI CACGTG 1 cut(s) 722
AfiI CCNNNNNNNGG 3 cut(s) 355, 481, 725
AflIII ACRYGT 1 cut(s) 721
AgsI TTSAA 3 cut(s) 16, 300, 685
AjuI GAANNNNNNNTTGG 4 cut(s) 122, 154, 690, 722
AluBI AGCT 4 cut(s) 46, 402, 543, 609
AluI AGCT 4 cut(s) 46, 402, 543, 609
Alw21I GWGCWC 2 cut(s) 48, 618
AlwI GGATC 1 cut(s) 396
AlwNI CAGNNNCTG 1 cut(s) 601
AoxI GGCC 5 cut(s) 57, 69, 182, 315, 369
ApeKI GCWGC 5 cut(s) 31, 273, 399, 491, 746
ApoI RAATTY 1 cut(s) 190
ArsI GACNNNNNNTTYG 2 cut(s) 386, 418
Asp700I GAANNNNTTC 1 cut(s) 107
AspA2I CCTAGG 1 cut(s) 644
AspS9I GGNCC 3 cut(s) 342, 359, 379
AsuC2I CCSGG 3 cut(s) 56, 356, 368
AvaII GGWCC 3 cut(s) 342, 359, 379
AvrII CCTAGG 1 cut(s) 644
AxyI CCTNAGG 1 cut(s) 90
BaeGI GKGCMC 1 cut(s) 308
BanI GGYRCC 1 cut(s) 305
BanII GRGCYC 1 cut(s) 48
BbrPI CACGTG 1 cut(s) 722
Bbv12I GWGCWC 2 cut(s) 48, 618
BbvCI CCTCAGC 1 cut(s) 269
BbvI GCAGC 5 cut(s) 43, 285, 411, 503, 733
BccI CCATC 1 cut(s) 491
BceAI ACGGC 2 cut(s) 49, 412
BcgI CGANNNNNNTGC 2 cut(s) 320, 354
BclI TGATCA 1 cut(s) 279
BcnI CCSGG 3 cut(s) 56, 356, 368
BfaI CTAG 2 cut(s) 645, 766
BglI GCCNNNNNGGC 1 cut(s) 743
BisI GCNGC 5 cut(s) 32, 274, 400, 492, 747
BlnI CCTAGG 1 cut(s) 644
BlsI GCNGC 5 cut(s) 33, 275, 401, 493, 748
Bme1390I CCNGG 3 cut(s) 56, 356, 368
Bme18I GGWCC 3 cut(s) 342, 359, 379
BmgT120I GGNCC 3 cut(s) 342, 359, 379
BmiI GGNNCC 5 cut(s) 257, 307, 344, 360, 502
BmrFI CCNGG 3 cut(s) 56, 356, 368
BmrI ACTGGG 2 cut(s) 582, 751
BmsI GCATC 4 cut(s) 94, 115, 445, 682
BmuI ACTGGG 2 cut(s) 582, 751
BoxI GACNNNNGTC 1 cut(s) 357
Bpu10I CCTNAGC 1 cut(s) 269
BpuEI CTTGAG 1 cut(s) 368
BpuMI CCSGG 3 cut(s) 56, 356, 368
BsaAI YACGTR 1 cut(s) 722
BsaJI CCNNGG 4 cut(s) 355, 426, 450, 644
Bsc4I CCNNNNNNNGG 3 cut(s) 355, 481, 725
Bse1I ACTGG 2 cut(s) 577, 746
Bse21I CCTNAGG 1 cut(s) 90
Bse3DI GCAATG 1 cut(s) 645
BseDI CCNNGG 4 cut(s) 355, 426, 450, 644
BseGI GGATG 3 cut(s) 85, 460, 697
BseLI CCNNNNNNNGG 3 cut(s) 355, 481, 725
BseMI GCAATG 1 cut(s) 645
BseMII CTCAG 2 cut(s) 104, 283
BseNI ACTGG 2 cut(s) 577, 746
BseSI GKGCMC 1 cut(s) 308
BseX3I CGGCCG 1 cut(s) 369
BseXI GCAGC 5 cut(s) 43, 285, 411, 503, 733
BsgI GTGCAG 2 cut(s) 50, 350
Bsh1285I CGRYCG 1 cut(s) 372
BshFI GGCC 5 cut(s) 59, 71, 184, 317, 371
BshNI GGYRCC 1 cut(s) 305
BsiEI CGRYCG 1 cut(s) 372
BsiHKAI GWGCWC 2 cut(s) 48, 618
BsiSI CCGG 3 cut(s) 56, 355, 368
BslFI GGGAC 1 cut(s) 612
BslI CCNNNNNNNGG 3 cut(s) 355, 481, 725
BsmFI GGGAC 1 cut(s) 612
BsnI GGCC 5 cut(s) 59, 71, 184, 317, 371
Bsp1286I GDGCHC 3 cut(s) 48, 308, 618
Bsp143I GATC 4 cut(s) 279, 373, 388, 414
BspACI CCGC 2 cut(s) 38, 689
BspANI GGCC 5 cut(s) 59, 71, 184, 317, 371
BspCNI CTCAG 2 cut(s) 103, 282
BspLI GGNNCC 5 cut(s) 257, 307, 344, 360, 502
BspPI GGATC 1 cut(s) 396
BspT107I GGYRCC 1 cut(s) 305
BsrDI GCAATG 1 cut(s) 645
BsrI ACTGG 2 cut(s) 577, 746
BssECI CCNNGG 4 cut(s) 355, 426, 450, 644
BssMI GATC 4 cut(s) 279, 373, 388, 414
BssT1I CCWWGG 3 cut(s) 426, 450, 644
Bst4CI ACNGT 2 cut(s) 439, 590
BstBAI YACGTR 1 cut(s) 722
BstC8I GCNNGC 3 cut(s) 6, 171, 333
BstDEI CTNAG 2 cut(s) 90, 269
BstF5I GGATG 3 cut(s) 85, 460, 697
BstKTI GATC 4 cut(s) 282, 376, 391, 417
BstMBI GATC 4 cut(s) 279, 373, 388, 414
BstMCI CGRYCG 1 cut(s) 372
BstMWI GCNNNNNNNGC 4 cut(s) 37, 134, 292, 743
BstNSI RCATGY 1 cut(s) 583
BstPAI GACNNNNGTC 1 cut(s) 357
BstSCI CCNGG 3 cut(s) 54, 354, 366
BstSLI GKGCMC 1 cut(s) 308
BstV1I GCAGC 5 cut(s) 43, 285, 411, 503, 733
BstX2I RGATCY 1 cut(s) 388
BstXI CCANNNNNNTGG 1 cut(s) 325
BstYI RGATCY 1 cut(s) 388
BstZI CGGCCG 1 cut(s) 369
Bsu36I CCTNAGG 1 cut(s) 90
BsuRI GGCC 5 cut(s) 59, 71, 184, 317, 371
BtsCI GGATG 3 cut(s) 85, 460, 697
BtsIMutI CAGTG 1 cut(s) 595
Cac8I GCNNGC 3 cut(s) 6, 171, 333
CaiI CAGNNNCTG 1 cut(s) 601
Cfr13I GGNCC 3 cut(s) 342, 359, 379
CviAII CATG 7 cut(s) 112, 117, 122, 202, 319, 580, 667
DdeI CTNAG 2 cut(s) 90, 269
DpnI GATC 4 cut(s) 281, 375, 390, 416
DpnII GATC 4 cut(s) 279, 373, 388, 414
EaeI YGGCCR 4 cut(s) 57, 69, 182, 369
EagI CGGCCG 1 cut(s) 369
EciI GGCGGA 1 cut(s) 704
Ecl136II GAGCTC 1 cut(s) 46
EclXI CGGCCG 1 cut(s) 369
Eco130I CCWWGG 3 cut(s) 426, 450, 644
Eco24I GRGCYC 1 cut(s) 48
Eco47I GGWCC 3 cut(s) 342, 359, 379
Eco52I CGGCCG 1 cut(s) 369
Eco53kI GAGCTC 1 cut(s) 46
Eco72I CACGTG 1 cut(s) 722
Eco81I CCTNAGG 1 cut(s) 90
EcoICRI GAGCTC 1 cut(s) 46
EcoO109I RGGNCCY 1 cut(s) 379
EcoT14I CCWWGG 3 cut(s) 426, 450, 644
EcoT38I GRGCYC 1 cut(s) 48
ErhI CCWWGG 3 cut(s) 426, 450, 644
FaeI CATG 7 cut(s) 115, 120, 125, 205, 322, 583, 670
FaqI GGGAC 1 cut(s) 612
FatI CATG 7 cut(s) 111, 116, 121, 201, 318, 579, 666
FbaI TGATCA 1 cut(s) 279
Fnu4HI GCNGC 5 cut(s) 32, 274, 400, 492, 747
FokI GGATG 3 cut(s) 72, 467, 704
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 5 cut(s) 32, 274, 400, 492, 747
FspBI CTAG 2 cut(s) 645, 766
GluI GCNGC 5 cut(s) 32, 274, 400, 492, 747
HaeIII GGCC 5 cut(s) 59, 71, 184, 317, 371
HapII CCGG 3 cut(s) 56, 355, 368
Hin1II CATG 7 cut(s) 115, 120, 125, 205, 322, 583, 670
HinfI GANTC 2 cut(s) 205, 706
HpaII CCGG 3 cut(s) 56, 355, 368
Hpy188I TCNGA 4 cut(s) 210, 342, 407, 517
Hpy188III TCNNGA 3 cut(s) 92, 392, 508
Hpy99I CGWCG 2 cut(s) 70, 509
HpyAV CCTTC 4 cut(s) 97, 205, 458, 628
HpyCH4III ACNGT 2 cut(s) 439, 590
HpyCH4IV ACGT 1 cut(s) 721
HpyCH4V TGCA 4 cut(s) 31, 331, 491, 579
HpyF10VI GCNNNNNNNGC 4 cut(s) 37, 134, 292, 743
HpyF3I CTNAG 2 cut(s) 90, 269
HpySE526I ACGT 1 cut(s) 721
Hsp92II CATG 7 cut(s) 115, 120, 125, 205, 322, 583, 670
Ksp22I TGATCA 1 cut(s) 279
Kzo9I GATC 4 cut(s) 279, 373, 388, 414
LmnI GCTCC 4 cut(s) 43, 255, 506, 565
Lsp1109I GCAGC 5 cut(s) 43, 285, 411, 503, 733
LweI GCATC 4 cut(s) 94, 115, 445, 682
MaeI CTAG 2 cut(s) 645, 766
MaeII ACGT 1 cut(s) 721
MaeIII GTNAC 1 cut(s) 350
MalI GATC 4 cut(s) 281, 375, 390, 416
MboI GATC 4 cut(s) 279, 373, 388, 414
MboII GAAGA 1 cut(s) 640
MflI RGATCY 1 cut(s) 388
MhlI GDGCHC 3 cut(s) 48, 308, 618
MluCI AATT 1 cut(s) 190
MmeI TCCRAC 2 cut(s) 540, 706
MnlI CCTC 7 cut(s) 99, 204, 278, 307, 356, 392, 652
MroXI GAANNNNTTC 1 cut(s) 107
MslI CAYNNNNRTG 1 cut(s) 323
MspI CCGG 3 cut(s) 56, 355, 368
MspR9I CCNGG 3 cut(s) 56, 356, 368
MwoI GCNNNNNNNGC 4 cut(s) 37, 134, 292, 743
NciI CCSGG 3 cut(s) 56, 356, 368
NdeII GATC 4 cut(s) 279, 373, 388, 414
NlaIII CATG 7 cut(s) 115, 120, 125, 205, 322, 583, 670
NlaIV GGNNCC 5 cut(s) 257, 307, 344, 360, 502
NmuCI GTSAC 1 cut(s) 350
NspI RCATGY 1 cut(s) 583
PcsI WCGNNNNNNNCGW 2 cut(s) 346, 513
PdmI GAANNNNTTC 1 cut(s) 107
PfeI GAWTC 2 cut(s) 205, 706
PflMI CCANNNNNTGG 1 cut(s) 725
PkrI GCNGC 5 cut(s) 33, 275, 401, 493, 748
PmaCI CACGTG 1 cut(s) 722
PmlI CACGTG 1 cut(s) 722
Ppu21I YACGTR 1 cut(s) 722
PpuMI RGGWCCY 1 cut(s) 379
PshAI GACNNNNGTC 1 cut(s) 357
Psp124BI GAGCTC 1 cut(s) 48
Psp5II RGGWCCY 1 cut(s) 379
PspCI CACGTG 1 cut(s) 722
PspN4I GGNNCC 5 cut(s) 257, 307, 344, 360, 502
PspPI GGNCC 3 cut(s) 342, 359, 379
PspPPI RGGWCCY 1 cut(s) 379
PstNI CAGNNNCTG 1 cut(s) 601
PsuI RGATCY 1 cut(s) 388
RseI CAYNNNNRTG 1 cut(s) 323
SacI GAGCTC 1 cut(s) 48
SatI GCNGC 5 cut(s) 32, 274, 400, 492, 747
Sau3AI GATC 4 cut(s) 279, 373, 388, 414
Sau96I GGNCC 3 cut(s) 342, 359, 379
ScrFI CCNGG 3 cut(s) 56, 356, 368
SduI GDGCHC 3 cut(s) 48, 308, 618
SetI ASST 8 cut(s) 48, 215, 270, 381, 404, 545, 611, 724
SfaNI GCATC 4 cut(s) 94, 115, 445, 682
SinI GGWCC 3 cut(s) 342, 359, 379
SmiMI CAYNNNNRTG 1 cut(s) 323
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 1 cut(s) 190
SsiI CCGC 2 cut(s) 38, 689
SspMI CTAG 2 cut(s) 645, 766
SstI GAGCTC 1 cut(s) 48
StyD4I CCNGG 3 cut(s) 54, 354, 366
StyI CCWWGG 3 cut(s) 426, 450, 644
TaaI ACNGT 2 cut(s) 439, 590
TaiI ACGT 1 cut(s) 724
TasI AATT 1 cut(s) 190
TfiI GAWTC 2 cut(s) 205, 706
TscAI CASTG 1 cut(s) 595
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 5 cut(s) 31, 273, 399, 491, 746
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 4 cut(s) 100, 218, 477, 647
TspGWI ACGGA 2 cut(s) 338, 493
TspRI CASTG 1 cut(s) 595
Van91I CCANNNNNTGG 1 cut(s) 725
VpaK11BI GGWCC 3 cut(s) 342, 359, 379
XapI RAATTY 1 cut(s) 190
XceI RCATGY 1 cut(s) 583
XmaJI CCTAGG 1 cut(s) 644
XmnI GAANNNNTTC 1 cut(s) 107
XspI CTAG 2 cut(s) 645, 766
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.