Rw5G005970

Stem-specific protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0017260
Physical Location & Seq
Forward (+)
6178505 .. 6179753
1249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G005970.1

Sequence Viewer

Length: 657 bp
ATGTCATGCCATGATGCCAATAATGCTTTCTCTGTTTGCTTTGGAAACAAGTCGTTGCTTGCTTATGTTCGGCCACAAAATTCCTTCTCCATGAATCAGAGGTTGTTCTGTTCTTTGGACAACATATACTGCGTTTTCTTGGGGAGCCTGAACAACCTCAGCAGCCTGATCAAGCAATATGGGCTTTCAAAGGGCACCAATGAGGCCATGTTTGTGGTGCAGGCTTATCGGACCCTCCGTGACCGTGGTCCATACCCGGCCGATCAGGTCCTCAAGGATCTGGACGGCAGCTTCGGATTTGTGATCTATGACACCAAGGCTGGAACTGTTTTTGCTTCCTTGGATGCTAATGAAGGGGTTAGCCTATATTGGGGGATTGCAGCAGATGGCTCCGTCGTGATTTCCGACAACTTGGGGGTCATAAAGGAAAGCTGTTCCAAGTCCTTTGCCCCATTCCCAACTGGGTGCATGTTCCACAGTGAGCAGGGACTGATGAGCTTTGAGCACCCAACAAGGAAGATGAAGGCAATGCCTAGGATTGATAGTGAGGGGGTCATGTGTGGGGCTAACTTCAAGGCGGATGCCCAATCAAAGATTCACAATATGCCACGTGTTGGAAGTGAAGCCAACTGGGCTGCTTGGGGACAACAAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3700

Protein Analysis

218

Amino Acids

23.86

Weight (kDa)

6.88

Isoelectric Point (pI)

32.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3700 PF12481 6 - 192 7.5e-91 Aluminium induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g04880
malus_domestica MD05G1315200.v1.1 MD10G1296500.v1.1
prunus_persica Prupe.4G044100_v2.0.a1
pyrus_communis pycom05g29280
rosa_chinensis RchiOBHm_Chr5g0008041
rosa_laevigata RLG00000031530
rosa_multiflora Rmu_sc0007348.1_g000001
rosa_rugosa Rorug04G0432900
rosa_samantha Rh5AG060900 Rh5BG057700 Rh5DG056900
rosa_wichuraiana Rw5G005970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 194
AccB7I CCANNNNNTGG 1 cut(s) 614
AciI CCGC 1 cut(s) 578
AclWI GGATC 1 cut(s) 285
AcoI YGGCCR 2 cut(s) 71, 258
AcsI RAATTY 1 cut(s) 79
AcvI CACGTG 1 cut(s) 611
AfiI CCNNNNNNNGG 2 cut(s) 370, 614
AflIII ACRYGT 1 cut(s) 610
AgsI TTSAA 2 cut(s) 189, 574
AjuI GAANNNNNNNTTGG 4 cut(s) 11, 43, 579, 611
AluBI AGCT 3 cut(s) 291, 432, 498
AluI AGCT 3 cut(s) 291, 432, 498
Alw21I GWGCWC 1 cut(s) 507
AlwI GGATC 1 cut(s) 285
AlwNI CAGNNNCTG 1 cut(s) 490
AoxI GGCC 3 cut(s) 71, 204, 258
ApeKI GCWGC 4 cut(s) 162, 288, 380, 635
ApoI RAATTY 1 cut(s) 79
ArsI GACNNNNNNTTYG 2 cut(s) 275, 307
AspA2I CCTAGG 1 cut(s) 533
AspS9I GGNCC 3 cut(s) 231, 248, 268
AsuC2I CCSGG 1 cut(s) 257
AvaII GGWCC 3 cut(s) 231, 248, 268
AvrII CCTAGG 1 cut(s) 533
BaeGI GKGCMC 1 cut(s) 197
BanI GGYRCC 1 cut(s) 194
BbrPI CACGTG 1 cut(s) 611
Bbv12I GWGCWC 1 cut(s) 507
BbvCI CCTCAGC 1 cut(s) 158
BbvI GCAGC 4 cut(s) 174, 300, 392, 622
BccI CCATC 1 cut(s) 380
BceAI ACGGC 1 cut(s) 301
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BclI TGATCA 1 cut(s) 168
BcnI CCSGG 1 cut(s) 257
BfaI CTAG 2 cut(s) 534, 655
BglI GCCNNNNNGGC 1 cut(s) 632
BisI GCNGC 4 cut(s) 163, 289, 381, 636
BlnI CCTAGG 1 cut(s) 533
BlsI GCNGC 4 cut(s) 164, 290, 382, 637
Bme1390I CCNGG 1 cut(s) 257
Bme18I GGWCC 3 cut(s) 231, 248, 268
BmgT120I GGNCC 3 cut(s) 231, 248, 268
BmiI GGNNCC 4 cut(s) 146, 196, 233, 391
BmrFI CCNGG 1 cut(s) 257
BmrI ACTGGG 2 cut(s) 471, 640
BmsI GCATC 3 cut(s) 4, 334, 571
BmuI ACTGGG 2 cut(s) 471, 640
BoxI GACNNNNGTC 1 cut(s) 246
Bpu10I CCTNAGC 1 cut(s) 158
BpuEI CTTGAG 1 cut(s) 257
BpuMI CCSGG 1 cut(s) 257
BsaAI YACGTR 1 cut(s) 611
BsaJI CCNNGG 4 cut(s) 244, 315, 339, 533
Bsc4I CCNNNNNNNGG 2 cut(s) 370, 614
Bse1I ACTGG 2 cut(s) 466, 635
Bse3DI GCAATG 1 cut(s) 534
BseDI CCNNGG 4 cut(s) 244, 315, 339, 533
BseGI GGATG 2 cut(s) 349, 586
BseLI CCNNNNNNNGG 2 cut(s) 370, 614
BseMI GCAATG 1 cut(s) 534
BseMII CTCAG 1 cut(s) 172
BseNI ACTGG 2 cut(s) 466, 635
BseSI GKGCMC 1 cut(s) 197
BseX3I CGGCCG 1 cut(s) 258
BseXI GCAGC 4 cut(s) 174, 300, 392, 622
BsgI GTGCAG 1 cut(s) 239
Bsh1285I CGRYCG 1 cut(s) 261
BshFI GGCC 3 cut(s) 73, 206, 260
BshNI GGYRCC 1 cut(s) 194
BsiEI CGRYCG 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 507
BsiSI CCGG 1 cut(s) 257
BslFI GGGAC 1 cut(s) 501
BslI CCNNNNNNNGG 2 cut(s) 370, 614
BsmFI GGGAC 1 cut(s) 501
BsnI GGCC 3 cut(s) 73, 206, 260
Bsp1286I GDGCHC 2 cut(s) 197, 507
Bsp143I GATC 4 cut(s) 168, 262, 277, 303
BspACI CCGC 1 cut(s) 578
BspANI GGCC 3 cut(s) 73, 206, 260
BspCNI CTCAG 1 cut(s) 171
BspLI GGNNCC 4 cut(s) 146, 196, 233, 391
BspPI GGATC 1 cut(s) 285
BspT107I GGYRCC 1 cut(s) 194
BsrDI GCAATG 1 cut(s) 534
BsrI ACTGG 2 cut(s) 466, 635
BssECI CCNNGG 4 cut(s) 244, 315, 339, 533
BssMI GATC 4 cut(s) 168, 262, 277, 303
BssT1I CCWWGG 3 cut(s) 315, 339, 533
Bst4CI ACNGT 3 cut(s) 245, 328, 479
BstBAI YACGTR 1 cut(s) 611
BstC8I GCNNGC 2 cut(s) 60, 222
BstDEI CTNAG 1 cut(s) 158
BstDSI CCRYGG 1 cut(s) 244
BstF5I GGATG 2 cut(s) 349, 586
BstKTI GATC 4 cut(s) 171, 265, 280, 306
BstMBI GATC 4 cut(s) 168, 262, 277, 303
BstMCI CGRYCG 1 cut(s) 261
BstMWI GCNNNNNNNGC 3 cut(s) 23, 181, 632
BstNSI RCATGY 1 cut(s) 472
BstPAI GACNNNNGTC 1 cut(s) 246
BstSCI CCNGG 1 cut(s) 255
BstSLI GKGCMC 1 cut(s) 197
BstV1I GCAGC 4 cut(s) 174, 300, 392, 622
BstX2I RGATCY 1 cut(s) 277
BstXI CCANNNNNNTGG 1 cut(s) 214
BstYI RGATCY 1 cut(s) 277
BstZI CGGCCG 1 cut(s) 258
BsuRI GGCC 3 cut(s) 73, 206, 260
BtgI CCRYGG 1 cut(s) 244
BtsCI GGATG 2 cut(s) 349, 586
BtsIMutI CAGTG 1 cut(s) 484
Cac8I GCNNGC 2 cut(s) 60, 222
CaiI CAGNNNCTG 1 cut(s) 490
Cfr13I GGNCC 3 cut(s) 231, 248, 268
CviAII CATG 6 cut(s) 6, 11, 91, 208, 469, 556
DdeI CTNAG 1 cut(s) 158
DpnI GATC 4 cut(s) 170, 264, 279, 305
DpnII GATC 4 cut(s) 168, 262, 277, 303
EaeI YGGCCR 2 cut(s) 71, 258
EagI CGGCCG 1 cut(s) 258
EciI GGCGGA 1 cut(s) 593
EclXI CGGCCG 1 cut(s) 258
Eco130I CCWWGG 3 cut(s) 315, 339, 533
Eco47I GGWCC 3 cut(s) 231, 248, 268
Eco52I CGGCCG 1 cut(s) 258
Eco72I CACGTG 1 cut(s) 611
EcoO109I RGGNCCY 1 cut(s) 268
EcoT14I CCWWGG 3 cut(s) 315, 339, 533
ErhI CCWWGG 3 cut(s) 315, 339, 533
FaeI CATG 6 cut(s) 9, 14, 94, 211, 472, 559
FaqI GGGAC 1 cut(s) 501
FatI CATG 6 cut(s) 5, 10, 90, 207, 468, 555
FbaI TGATCA 1 cut(s) 168
Fnu4HI GCNGC 4 cut(s) 163, 289, 381, 636
FokI GGATG 2 cut(s) 356, 593
Fsp4HI GCNGC 4 cut(s) 163, 289, 381, 636
FspBI CTAG 2 cut(s) 534, 655
GluI GCNGC 4 cut(s) 163, 289, 381, 636
HaeIII GGCC 3 cut(s) 73, 206, 260
HapII CCGG 1 cut(s) 257
Hin1II CATG 6 cut(s) 9, 14, 94, 211, 472, 559
HinfI GANTC 2 cut(s) 94, 595
HpaII CCGG 1 cut(s) 257
Hpy188I TCNGA 4 cut(s) 99, 231, 296, 406
Hpy188III TCNNGA 2 cut(s) 281, 397
Hpy99I CGWCG 1 cut(s) 398
HpyAV CCTTC 3 cut(s) 94, 347, 517
HpyCH4III ACNGT 3 cut(s) 245, 328, 479
HpyCH4IV ACGT 1 cut(s) 610
HpyCH4V TGCA 3 cut(s) 220, 380, 468
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 181, 632
HpyF3I CTNAG 1 cut(s) 158
HpySE526I ACGT 1 cut(s) 610
Hsp92II CATG 6 cut(s) 9, 14, 94, 211, 472, 559
Ksp22I TGATCA 1 cut(s) 168
Kzo9I GATC 4 cut(s) 168, 262, 277, 303
LmnI GCTCC 2 cut(s) 144, 395
Lsp1109I GCAGC 4 cut(s) 174, 300, 392, 622
LweI GCATC 3 cut(s) 4, 334, 571
MaeI CTAG 2 cut(s) 534, 655
MaeII ACGT 1 cut(s) 610
MaeIII GTNAC 1 cut(s) 239
MalI GATC 4 cut(s) 170, 264, 279, 305
MboI GATC 4 cut(s) 168, 262, 277, 303
MboII GAAGA 1 cut(s) 529
MflI RGATCY 1 cut(s) 277
MhlI GDGCHC 2 cut(s) 197, 507
MluCI AATT 1 cut(s) 79
MmeI TCCRAC 2 cut(s) 429, 595
MnlI CCTC 6 cut(s) 93, 167, 196, 245, 281, 541
MslI CAYNNNNRTG 1 cut(s) 212
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 1 cut(s) 257
MwoI GCNNNNNNNGC 3 cut(s) 23, 181, 632
NciI CCSGG 1 cut(s) 257
NdeII GATC 4 cut(s) 168, 262, 277, 303
NlaIII CATG 6 cut(s) 9, 14, 94, 211, 472, 559
NlaIV GGNNCC 4 cut(s) 146, 196, 233, 391
NmuCI GTSAC 1 cut(s) 239
NspI RCATGY 1 cut(s) 472
PcsI WCGNNNNNNNCGW 2 cut(s) 235, 402
PfeI GAWTC 2 cut(s) 94, 595
PflMI CCANNNNNTGG 1 cut(s) 614
PkrI GCNGC 4 cut(s) 164, 290, 382, 637
PmaCI CACGTG 1 cut(s) 611
PmlI CACGTG 1 cut(s) 611
Ppu21I YACGTR 1 cut(s) 611
PpuMI RGGWCCY 1 cut(s) 268
PshAI GACNNNNGTC 1 cut(s) 246
Psp5II RGGWCCY 1 cut(s) 268
PspCI CACGTG 1 cut(s) 611
PspN4I GGNNCC 4 cut(s) 146, 196, 233, 391
PspPI GGNCC 3 cut(s) 231, 248, 268
PspPPI RGGWCCY 1 cut(s) 268
PstNI CAGNNNCTG 1 cut(s) 490
PsuI RGATCY 1 cut(s) 277
RseI CAYNNNNRTG 1 cut(s) 212
SatI GCNGC 4 cut(s) 163, 289, 381, 636
Sau3AI GATC 4 cut(s) 168, 262, 277, 303
Sau96I GGNCC 3 cut(s) 231, 248, 268
ScrFI CCNGG 1 cut(s) 257
SduI GDGCHC 2 cut(s) 197, 507
SetI ASST 7 cut(s) 104, 159, 270, 293, 434, 500, 613
SfaNI GCATC 3 cut(s) 4, 334, 571
SinI GGWCC 3 cut(s) 231, 248, 268
SmiMI CAYNNNNRTG 1 cut(s) 212
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
Sse9I AATT 1 cut(s) 79
SsiI CCGC 1 cut(s) 578
SspMI CTAG 2 cut(s) 534, 655
StyD4I CCNGG 1 cut(s) 255
StyI CCWWGG 3 cut(s) 315, 339, 533
TaaI ACNGT 3 cut(s) 245, 328, 479
TaiI ACGT 1 cut(s) 613
TasI AATT 1 cut(s) 79
TfiI GAWTC 2 cut(s) 94, 595
TscAI CASTG 1 cut(s) 484
TseFI GTSAC 1 cut(s) 239
TseI GCWGC 4 cut(s) 162, 288, 380, 635
Tsp45I GTSAC 1 cut(s) 239
TspDTI ATGAA 3 cut(s) 107, 366, 536
TspGWI ACGGA 2 cut(s) 227, 382
TspRI CASTG 1 cut(s) 484
Van91I CCANNNNNTGG 1 cut(s) 614
VpaK11BI GGWCC 3 cut(s) 231, 248, 268
XapI RAATTY 1 cut(s) 79
XceI RCATGY 1 cut(s) 472
XmaJI CCTAGG 1 cut(s) 533
XspI CTAG 2 cut(s) 534, 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.