FvH4_3g05000

hmr,ptac12

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
2875096 .. 2880794
5699 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g05000.t1

Sequence Viewer

Length: 1653 bp
ATGGCATCTATATCAACCACTTGGCTCTATCAAGATAGAGGATTCAAAGGTTCAGTCTTTGCACAGAGCCATGCTGCTGGGAACCCATATTTCAATTTCAAGACATCCTTTGTTAGATCCTTTCCGGTTAGAGTTGGCTTAAGTGTGTCACCGAGGAGGGCACCTTTACTTCCTTGTATAAAGTGTGAGAAGAACGATGAATCTTCCAAAGATGTGTCTGCTGATGAACCTTCCAAAGATGTGTCTATTGATGAATCTCCAAAAGAGGTTACGAAAGAGGTGACTATCGAGCGTGCACCCTACTATAGTTATCTGGACTCTACATCTGGGCAGCTTGAACCAGCATCTGGTGCTCGTGCCAGCATTCCCGGACAGGATTATTGGCCTGAAGGCACTGCTAGTCGAGTTAGGGCAGCCAATGCACCCGAACCAACTGGTCAGTCTCTTGGCTCTCCATCTTTTGGAAAAAATCCTGGAAGTAGGAGGAGGAAGAATAAAGCATCAGCAGCAGTTGAGGCTCATGACTCTTCTGAGCCGAGTGTAAAACCAAGTGAACTAGTGACAGTGGCACTGGAACCAGAGGTTTTGGAGGACACAATGGAAGATTCCAAAGATATTTCATCTGACTATGTGGTCTATCAGACTGAACCGGAAAAAGAAGAAGAAACAGGATATGAGCTAGACAAGAAACTTGGACGTCCTCATCCATTTATTGATCCAGAAACTAAGAAGCCATTGGAAGAGCCGCTTACAAGTGACGAACTATGGTGGAACTGGAGAAAACCAGACAAGGAACAATGGTCTAGATGGCAACGGAGGCGACCTGACGTTGAAACGGTTTTTCTCAAAGCAATGGCAGAGACTGGGCAAGTAAAGCTTTATGGAGAAACACCAACATTGACTGAAACTTCACTTTACAGAGCAAGACGACATCTTTTCAAGGAAGAAAGGCTTCAAGCTGAACAAGAGAGACTGGATAAGATAGGTCCGCTTGCATTTTATTCAGAATGGGTAAAAGATTGGAAGAGAGACACTTCTCGAGAAGCTGTTCAAAAGCATTTTGAAGAGACTGGTGAAAATGAAACAACCCAACTAATTGACATGCTTAGTCATCAAACAGATCGGGAGTATCGCATAATGATGGGGACTGATATCCGAATAAAGAGGGATCCTTTAGCAATGCGAATGCGGGAGGACCAGATAAAGCAAATATGGGGTGGAGATCCAGTTTACCCAACTATTAACTATATTCAAGATCCAGATGAAGTGATTGATTACAGAGGCCCAGATTTTCATGAACCAACACCAAATATGCTGTCTTTTCTGAAGGAGCATGGAAAAATCATATCAAGAGACGAGCTTGATACAATTCTGTCAAAGGAGAAGACCGAAGTGATTGAGGCACCTGATATAGATGAAGCTATGGCACAAGCTGTTGACATTGGCGAAAATGATGACGAAGGAGAAGATAGTGAAGCAGAGGCTGATGAACAAGGGGAGAAAATCACACGCAATTGGAGCGTTTTGAAAAGTACTCCTCAGCTTACCAAGTCAAAGGAGAAACCAAAAAAGGGAGGTCCCATGTCTTTGGATGAGGCTGTAGACGATTCTGAGAACTTGACTGATTTCCTTATGGACTTTGAGGAAGAGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

551

Amino Acids

62.68

Weight (kDa)

4.78

Isoelectric Point (pI)

42.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 632
AatII GACGTC 1 cut(s) 700
AccB1I GGYRCC 2 cut(s) 160, 1402
AccB7I CCANNNNNTGG 2 cut(s) 347, 461
AccI GTMKAC 1 cut(s) 1602
AciI CCGC 3 cut(s) 746, 989, 1189
AclWI GGATC 6 cut(s) 111, 710, 1163, 1176, 1217, 1250
AcuI CTGAAG 2 cut(s) 408, 1346
AcyI GRCGYC 1 cut(s) 697
AfaI GTAC 1 cut(s) 1534
AfiI CCNNNNNNNGG 3 cut(s) 347, 461, 1571
AflII CTTAAG 1 cut(s) 139
AhlI ACTAGT 1 cut(s) 556
AjnI CCWGG 1 cut(s) 472
AluBI AGCT 9 cut(s) 334, 679, 877, 959, 1046, 1360, 1421, 1433, 1543
AluI AGCT 9 cut(s) 334, 679, 877, 959, 1046, 1360, 1421, 1433, 1543
Alw21I GWGCWC 2 cut(s) 298, 355
Alw26I GTCTC 6 cut(s) 447, 854, 964, 1023, 1061, 1347
Alw44I GTGCAC 1 cut(s) 294
AlwI GGATC 6 cut(s) 111, 710, 1163, 1176, 1217, 1250
AlwNI CAGNNNCTG 3 cut(s) 347, 863, 1484
Ama87I CYCGRG 1 cut(s) 1038
AoxI GGCC 2 cut(s) 383, 1282
ApaLI GTGCAC 1 cut(s) 294
ApeKI GCWGC 4 cut(s) 74, 331, 413, 506
ArsI GACNNNNNNTTYG 4 cut(s) 39, 71, 1301, 1333
Asp700I GAANNNNTTC 2 cut(s) 951, 1047
AspS9I GGNCC 4 cut(s) 986, 1195, 1283, 1577
AsuC2I CCSGG 1 cut(s) 369
AsuHPI GGTGA 3 cut(s) 141, 292, 1085
AvaI CYCGRG 1 cut(s) 1038
AvaII GGWCC 3 cut(s) 986, 1195, 1577
BaeGI GKGCMC 2 cut(s) 163, 298
BamHI GGATCC 1 cut(s) 1168
BanI GGYRCC 2 cut(s) 160, 1402
BauI CACGAG 1 cut(s) 354
BbsI GAAGAC 1 cut(s) 1391
Bbv12I GWGCWC 2 cut(s) 298, 355
BbvCI CCTCAGC 1 cut(s) 1539
BbvI GCAGC 4 cut(s) 61, 343, 425, 518
BccI CCATC 3 cut(s) 463, 801, 1135
BciT130I CCWGG 1 cut(s) 474
BcnI CCSGG 1 cut(s) 369
BcoDI GTCTC 6 cut(s) 447, 854, 964, 1023, 1061, 1347
BcuI ACTAGT 1 cut(s) 556
BfaI CTAG 4 cut(s) 399, 557, 680, 804
BfmI CTRYAG 2 cut(s) 304, 1599
BfrI CTTAAG 1 cut(s) 139
BisI GCNGC 5 cut(s) 75, 332, 414, 507, 746
BlsI GCNGC 5 cut(s) 76, 333, 415, 508, 747
BmcAI AGTACT 1 cut(s) 1534
Bme1390I CCNGG 2 cut(s) 369, 474
Bme18I GGWCC 3 cut(s) 986, 1195, 1577
BmeT110I CYCGRG 1 cut(s) 1038
BmgT120I GGNCC 4 cut(s) 986, 1195, 1283, 1577
BmiI GGNNCC 6 cut(s) 83, 162, 576, 1170, 1404, 1579
BmrFI CCNGG 2 cut(s) 369, 474
BmrI ACTGGG 1 cut(s) 873
BmsI GCATC 3 cut(s) 14, 353, 509
BmuI ACTGGG 1 cut(s) 873
BpiI GAAGAC 1 cut(s) 1391
BpmI CTGGAG 1 cut(s) 796
Bpu10I CCTNAGC 1 cut(s) 1539
BpuMI CCSGG 1 cut(s) 369
BsaHI GRCGYC 1 cut(s) 697
BsaJI CCNNGG 1 cut(s) 152
BsaWI WCCGGW 2 cut(s) 124, 649
BsaXI ACNNNNNCTCC 2 cut(s) 1212, 1242
Bsc4I CCNNNNNNNGG 3 cut(s) 347, 461, 1571
Bse1I ACTGG 7 cut(s) 439, 576, 779, 868, 978, 1075, 1226
Bse3DI GCAATG 2 cut(s) 858, 1185
BseBI CCWGG 1 cut(s) 474
BseDI CCNNGG 1 cut(s) 152
BseGI GGATG 3 cut(s) 104, 703, 1597
BseLI CCNNNNNNNGG 3 cut(s) 347, 461, 1571
BseMI GCAATG 2 cut(s) 858, 1185
BseMII CTCAG 3 cut(s) 522, 1553, 1602
BseNI ACTGG 7 cut(s) 439, 576, 779, 868, 978, 1075, 1226
BseRI GAGGAG 3 cut(s) 169, 499, 1527
BseSI GKGCMC 2 cut(s) 163, 298
BseXI GCAGC 4 cut(s) 61, 343, 425, 518
BseYI CCCAGC 1 cut(s) 77
BshFI GGCC 2 cut(s) 385, 1284
BshNI GGYRCC 2 cut(s) 160, 1402
BsiHKAI GWGCWC 2 cut(s) 298, 355
BsiHKCI CYCGRG 1 cut(s) 1038
BsiSI CCGG 3 cut(s) 125, 369, 650
BslFI GGGAC 2 cut(s) 1159, 1563
BslI CCNNNNNNNGG 3 cut(s) 347, 461, 1571
BsmAI GTCTC 6 cut(s) 447, 854, 964, 1023, 1061, 1347
BsmBI CGTCTC 1 cut(s) 1347
BsmFI GGGAC 2 cut(s) 1159, 1563
BsmI GAATGC 2 cut(s) 363, 1191
BsnI GGCC 2 cut(s) 385, 1284
BsoBI CYCGRG 1 cut(s) 1038
Bsp1286I GDGCHC 3 cut(s) 163, 298, 355
Bsp143I GATC 6 cut(s) 116, 715, 1120, 1168, 1222, 1255
BspACI CCGC 3 cut(s) 746, 989, 1189
BspANI GGCC 2 cut(s) 385, 1284
BspCNI CTCAG 3 cut(s) 523, 1552, 1603
BspHI TCATGA 2 cut(s) 520, 1294
BspLI GGNNCC 6 cut(s) 83, 162, 576, 1170, 1404, 1579
BspPI GGATC 6 cut(s) 111, 710, 1163, 1176, 1217, 1250
BspQI GCTCTTC 1 cut(s) 735
BspT107I GGYRCC 2 cut(s) 160, 1402
BspTI CTTAAG 1 cut(s) 139
BsrDI GCAATG 2 cut(s) 858, 1185
BsrI ACTGG 7 cut(s) 439, 576, 779, 868, 978, 1075, 1226
BssECI CCNNGG 1 cut(s) 152
BssMI GATC 6 cut(s) 116, 715, 1120, 1168, 1222, 1255
BssNI GRCGYC 1 cut(s) 697
BssSI CACGAG 1 cut(s) 354
Bst2BI CACGAG 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 474
Bst4CI ACNGT 2 cut(s) 565, 838
Bst6I CTCTTC 5 cut(s) 532, 735, 1019, 1059, 1641
BstACI GRCGYC 1 cut(s) 697
BstAFI CTTAAG 1 cut(s) 139
BstAPI GCANNNNNTGC 2 cut(s) 350, 419
BstC8I GCNNGC 3 cut(s) 294, 361, 993
BstDEI CTNAG 5 cut(s) 531, 726, 1106, 1539, 1611
BstF5I GGATG 3 cut(s) 104, 703, 1597
BstKTI GATC 6 cut(s) 119, 718, 1123, 1171, 1225, 1258
BstMAI GTCTC 6 cut(s) 447, 854, 964, 1023, 1061, 1347
BstMBI GATC 6 cut(s) 116, 715, 1120, 1168, 1222, 1255
BstMWI GCNNNNNNNGC 7 cut(s) 350, 419, 506, 515, 817, 874, 1518
BstNI CCWGG 1 cut(s) 474
BstNSI RCATGY 1 cut(s) 1105
BstSCI CCNGG 2 cut(s) 367, 472
BstSFI CTRYAG 2 cut(s) 304, 1599
BstSLI GKGCMC 2 cut(s) 163, 298
BstV1I GCAGC 4 cut(s) 61, 343, 425, 518
BstV2I GAAGAC 1 cut(s) 1391
BstX2I RGATCY 4 cut(s) 116, 1168, 1222, 1255
BstXI CCANNNNNNTGG 2 cut(s) 77, 1588
BstYI RGATCY 4 cut(s) 116, 1168, 1222, 1255
BsuRI GGCC 2 cut(s) 385, 1284
BtsCI GGATG 3 cut(s) 104, 703, 1597
BtsI GCAGTG 1 cut(s) 393
BtsIMutI CAGTG 3 cut(s) 393, 569, 570
Cac8I GCNNGC 3 cut(s) 294, 361, 993
CaiI CAGNNNCTG 3 cut(s) 347, 863, 1484
CciI TCATGA 2 cut(s) 520, 1294
Cfr13I GGNCC 4 cut(s) 986, 1195, 1283, 1577
Csp6I GTAC 1 cut(s) 1533
CviAII CATG 6 cut(s) 71, 521, 1102, 1295, 1334, 1582
CviQI GTAC 1 cut(s) 1533
DdeI CTNAG 5 cut(s) 531, 726, 1106, 1539, 1611
DpnI GATC 6 cut(s) 118, 717, 1122, 1170, 1224, 1257
DpnII GATC 6 cut(s) 116, 715, 1120, 1168, 1222, 1255
DrdI GACNNNNNNGTC 1 cut(s) 632
DseDI GACNNNNNNGTC 1 cut(s) 632
Eam1104I CTCTTC 5 cut(s) 532, 735, 1019, 1059, 1641
EarI CTCTTC 5 cut(s) 532, 735, 1019, 1059, 1641
Eco32I GATATC 1 cut(s) 1153
Eco47I GGWCC 3 cut(s) 986, 1195, 1577
Eco57I CTGAAG 2 cut(s) 408, 1346
Eco88I CYCGRG 1 cut(s) 1038
EcoO109I RGGNCCY 1 cut(s) 1577
EcoRII CCWGG 1 cut(s) 472
EcoRV GATATC 1 cut(s) 1153
Esp3I CGTCTC 1 cut(s) 1347
FaeI CATG 6 cut(s) 74, 524, 1105, 1298, 1337, 1585
FalI AAGNNNNNCTT 8 cut(s) 92, 124, 732, 764, 861, 893, 936, 968
FaqI GGGAC 2 cut(s) 1159, 1563
FatI CATG 6 cut(s) 70, 520, 1101, 1294, 1333, 1581
FauI CCCGC 1 cut(s) 1182
FblI GTMKAC 1 cut(s) 1602
Fnu4HI GCNGC 5 cut(s) 75, 332, 414, 507, 746
FokI GGATG 3 cut(s) 91, 690, 1604
Fsp4HI GCNGC 5 cut(s) 75, 332, 414, 507, 746
FspBI CTAG 4 cut(s) 399, 557, 680, 804
GluI GCNGC 5 cut(s) 75, 332, 414, 507, 746
GsaI CCCAGC 1 cut(s) 81
GsuI CTGGAG 1 cut(s) 796
HaeIII GGCC 2 cut(s) 385, 1284
HapII CCGG 3 cut(s) 125, 369, 650
Hin1I GRCGYC 1 cut(s) 697
Hin1II CATG 6 cut(s) 74, 524, 1105, 1298, 1337, 1585
HincII GTYRAC 1 cut(s) 1438
HindII GTYRAC 1 cut(s) 1438
HindIII AAGCTT 1 cut(s) 875
HinfI GANTC 7 cut(s) 42, 200, 254, 317, 524, 605, 1607
HpaII CCGG 3 cut(s) 125, 369, 650
HphI GGTGA 3 cut(s) 141, 292, 1085
Hpy166II GTNNAC 5 cut(s) 296, 554, 1231, 1438, 1603
Hpy188I TCNGA 7 cut(s) 532, 625, 642, 1006, 1157, 1326, 1612
Hpy8I GTNNAC 5 cut(s) 296, 554, 1231, 1438, 1603
HpyAV CCTTC 4 cut(s) 240, 383, 1321, 1454
HpyCH4III ACNGT 2 cut(s) 565, 838
HpyCH4IV ACGT 2 cut(s) 697, 828
HpyCH4V TGCA 4 cut(s) 62, 296, 422, 995
HpyF10VI GCNNNNNNNGC 7 cut(s) 350, 419, 506, 515, 817, 874, 1518
HpyF3I CTNAG 5 cut(s) 531, 726, 1106, 1539, 1611
HpySE526I ACGT 2 cut(s) 697, 828
Hsp92I GRCGYC 1 cut(s) 697
Hsp92II CATG 6 cut(s) 74, 524, 1105, 1298, 1337, 1585
Kzo9I GATC 6 cut(s) 116, 715, 1120, 1168, 1222, 1255
LguI GCTCTTC 1 cut(s) 735
LmnI GCTCC 2 cut(s) 1330, 1518
Lsp1109I GCAGC 4 cut(s) 61, 343, 425, 518
LweI GCATC 3 cut(s) 14, 353, 509
MaeI CTAG 4 cut(s) 399, 557, 680, 804
MaeII ACGT 2 cut(s) 697, 828
MaeIII GTNAC 5 cut(s) 147, 268, 280, 559, 755
MalI GATC 6 cut(s) 118, 717, 1122, 1170, 1224, 1257
MboI GATC 6 cut(s) 116, 715, 1120, 1168, 1222, 1255
MfeI CAATTG 1 cut(s) 1513
MflI RGATCY 4 cut(s) 116, 1168, 1222, 1255
MhlI GDGCHC 3 cut(s) 163, 298, 355
MluCI AATT 4 cut(s) 94, 1095, 1368, 1513
MlyI GAGTC 2 cut(s) 311, 518
MroXI GAANNNNTTC 2 cut(s) 951, 1047
MseI TTAA 2 cut(s) 140, 1242
MslI CAYNNNNRTG 1 cut(s) 1139
MspCI CTTAAG 1 cut(s) 139
MspI CCGG 3 cut(s) 125, 369, 650
MspR9I CCNGG 2 cut(s) 369, 474
MunI CAATTG 1 cut(s) 1513
Mva1269I GAATGC 2 cut(s) 363, 1191
MvaI CCWGG 1 cut(s) 474
MwoI GCNNNNNNNGC 7 cut(s) 350, 419, 506, 515, 817, 874, 1518
NciI CCSGG 1 cut(s) 369
NdeII GATC 6 cut(s) 116, 715, 1120, 1168, 1222, 1255
NlaIII CATG 6 cut(s) 74, 524, 1105, 1298, 1337, 1585
NlaIV GGNNCC 6 cut(s) 83, 162, 576, 1170, 1404, 1579
NmeAIII GCCGAG 1 cut(s) 561
NmuCI GTSAC 4 cut(s) 147, 280, 559, 755
NspI RCATGY 1 cut(s) 1105
PaeR7I CTCGAG 1 cut(s) 1038
PagI TCATGA 2 cut(s) 520, 1294
PciSI GCTCTTC 1 cut(s) 735
PctI GAATGC 2 cut(s) 363, 1191
PdmI GAANNNNTTC 2 cut(s) 951, 1047
PfeI GAWTC 5 cut(s) 42, 200, 254, 605, 1607
PflMI CCANNNNNTGG 2 cut(s) 347, 461
PfoI TCCNGGA 2 cut(s) 367, 472
PkrI GCNGC 5 cut(s) 76, 333, 415, 508, 747
PleI GAGTC 2 cut(s) 311, 518
PpsI GAGTC 2 cut(s) 311, 518
PpuMI RGGWCCY 1 cut(s) 1577
Psp5II RGGWCCY 1 cut(s) 1577
Psp6I CCWGG 1 cut(s) 472
PspFI CCCAGC 1 cut(s) 77
PspGI CCWGG 1 cut(s) 472
PspN4I GGNNCC 6 cut(s) 83, 162, 576, 1170, 1404, 1579
PspPI GGNCC 4 cut(s) 986, 1195, 1283, 1577
PspPPI RGGWCCY 1 cut(s) 1577
PstNI CAGNNNCTG 3 cut(s) 347, 863, 1484
PsuI RGATCY 4 cut(s) 116, 1168, 1222, 1255
RsaI GTAC 1 cut(s) 1534
RsaNI GTAC 1 cut(s) 1533
RseI CAYNNNNRTG 1 cut(s) 1139
SapI GCTCTTC 1 cut(s) 735
SaqAI TTAA 2 cut(s) 140, 1242
SatI GCNGC 5 cut(s) 75, 332, 414, 507, 746
Sau3AI GATC 6 cut(s) 116, 715, 1120, 1168, 1222, 1255
Sau96I GGNCC 4 cut(s) 986, 1195, 1283, 1577
ScaI AGTACT 1 cut(s) 1534
SchI GAGTC 2 cut(s) 311, 518
ScrFI CCNGG 2 cut(s) 369, 474
SduI GDGCHC 3 cut(s) 163, 298, 355
SfaNI GCATC 3 cut(s) 14, 353, 509
SfcI CTRYAG 2 cut(s) 304, 1599
Sfr274I CTCGAG 1 cut(s) 1038
SinI GGWCC 3 cut(s) 986, 1195, 1577
SlaI CTCGAG 1 cut(s) 1038
SmiMI CAYNNNNRTG 1 cut(s) 1139
SmlI CTYRAG 2 cut(s) 139, 1038
SmoI CTYRAG 2 cut(s) 139, 1038
SpeI ACTAGT 1 cut(s) 556
Sse9I AATT 4 cut(s) 94, 1095, 1368, 1513
SsiI CCGC 3 cut(s) 746, 989, 1189
SspMI CTAG 4 cut(s) 399, 557, 680, 804
StyD4I CCNGG 2 cut(s) 367, 472
TaaI ACNGT 2 cut(s) 565, 838
TaiI ACGT 2 cut(s) 700, 831
TaqI TCGA 3 cut(s) 288, 403, 1039
TaqII GACCGA 1 cut(s) 1403
TasI AATT 4 cut(s) 94, 1095, 1368, 1513
TatI WGTACW 1 cut(s) 1532
TauI GCSGC 1 cut(s) 748
TfiI GAWTC 5 cut(s) 42, 200, 254, 605, 1607
Tru1I TTAA 2 cut(s) 140, 1242
Tru9I TTAA 2 cut(s) 140, 1242
TscAI CASTG 3 cut(s) 400, 570, 576
TseFI GTSAC 4 cut(s) 147, 280, 559, 755
TseI GCWGC 4 cut(s) 74, 331, 413, 506
Tsp45I GTSAC 4 cut(s) 147, 280, 559, 755
TspGWI ACGGA 1 cut(s) 829
TspRI CASTG 3 cut(s) 400, 570, 576
Van91I CCANNNNNTGG 2 cut(s) 347, 461
Vha464I CTTAAG 1 cut(s) 139
VneI GTGCAC 1 cut(s) 294
VpaK11BI GGWCC 3 cut(s) 986, 1195, 1577
XbaI TCTAGA 1 cut(s) 803
XceI RCATGY 1 cut(s) 1105
XhoI CTCGAG 1 cut(s) 1038
XmiI GTMKAC 1 cut(s) 1602
XmnI GAANNNNTTC 2 cut(s) 951, 1047
XspI CTAG 4 cut(s) 399, 557, 680, 804
ZraI GACGTC 1 cut(s) 698
ZrmI AGTACT 1 cut(s) 1534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.