Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001354

Physical Location & Seq

Genomic Coordinates Reverse (-)

1428339 .. 1431505

Gene Structure 3167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0022200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCACCGAAGATCGCGTCGAGAATAACAAAAAGGTCCTTAGGACGATATGATGTTCAAAGTGATAACAATGAGGCCGGAATACTAAGATTCTACGATGATCAAAGTTTGCATGCTTCAATAAGTGGAGCCAAGGATAGTTTACTTAGTACTGAAACAAACCGTCAGATTCAACCAAGAAAGCGAAAACAAGTGTCTCAGCTAGCACTGAGAGAAAAGGATGAATCTTCGAAAACTGGTGAACGTCGTGACAAACGAGCCAGAAGCGATCAACAAGGTTCTACTGAGATACAAAACCAAGGTCAATGTTCCCATATGTTTGGTCAAGCATTTTATCAAAAAAGCAGACGAGGTTATTTCTTTCAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

123

Amino Acids

14.15

Weight (kDa)

10.06

Isoelectric Point (pI)

68.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30330 AT1G30330 AT1G30330
fragaria_vesca	FvH4_3g05010 FvH4_3g05010 FvH4_3g05010 FvH4_3g05010 FvH4_3g05010 FvH4_3g05010 FvH4_3g05010 FvH4_6g39140 FvH4_6g39140
malus_domestica	MD05G1279200.v1.1 MD09G1145000.v1.1 MD10G1257900.v1.1 MD17G1131500.v1.1
prunus_persica	Prupe.3G182900_v2.0.a1 Prupe.3G182900_v2.0.a1 Prupe.3G182900_v2.0.a1 Prupe.3G182900_v2.0.a1 Prupe.3G182900_v2.0.a1 Prupe.4G085900_v2.0.a1 Prupe.4G085900_v2.0.a1
pyrus_communis	pycom05g25950 pycom09g06440 pycom10g21420 pycom17g12430
rosa_chinensis	RchiOBHm_Chr2g0152951 RchiOBHm_Chr5g0014961
rosa_laevigata	RLG00000020659 RLG00000032155
rosa_multiflora	Rmu_sc0004889.1_g000010 Rmu_ssc0000489.1_g000004
rosa_roxburghii	Rroxscaffold_1G00061620 Rroxscaffold_2G00095350
rosa_rugosa	Rorug02G0436400 Rorug04G0123900 Rorug04G0123900 Rorug05G0022000 Rorug05G0022100 Rorug05G0022200 Rorug05G0022200
rosa_samantha	Rh2AG498300 Rh2BG509500 Rh2CG484400 Rh2DG521200 Rh5AG117500 Rh5BG114600 Rh5BG114700 Rh5CG126000 Rh5DG113900
rosa_wichuraiana	Rw2G040900 Rw5G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	1 cut(s)	17
AcsI	RAATTY	1 cut(s)	366
AfaI	GTAC	1 cut(s)	151
AgsI	TTSAA	4 cut(s)	59, 120, 173, 365
AluBI	AGCT	1 cut(s)	202
AluI	AGCT	1 cut(s)	202
Alw26I	GTCTC	1 cut(s)	201
AoxI	GGCC	1 cut(s)	75
ApoI	RAATTY	1 cut(s)	366
ArsI	GACNNNNNNTTYG	3 cut(s)	34, 286, 318
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	251
AsuII	TTCGAA	1 cut(s)	230
AsuNHI	GCTAGC	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	36
AxyI	CCTNAGG	1 cut(s)	40
BanI	GGYRCC	1 cut(s)	4
BclI	TGATCA	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	201
BfaI	CTAG	1 cut(s)	203
BmcAI	AGTACT	1 cut(s)	151
Bme18I	GGWCC	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	2 cut(s)	6, 130
BmtI	GCTAGC	1 cut(s)	206
Bpu14I	TTCGAA	1 cut(s)	230
BsaJI	CCNNGG	2 cut(s)	132, 298
Bse1I	ACTGG	1 cut(s)	241
Bse21I	CCTNAGG	1 cut(s)	40
BseDI	CCNNGG	2 cut(s)	132, 298
BseGI	GGATG	1 cut(s)	226
BseMII	CTCAG	3 cut(s)	200, 212, 276
BseNI	ACTGG	1 cut(s)	241
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	1 cut(s)	77
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	78
BsmAI	GTCTC	1 cut(s)	201
BsnI	GGCC	1 cut(s)	77
Bsp119I	TTCGAA	1 cut(s)	230
Bsp143I	GATC	3 cut(s)	12, 100, 268
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	3 cut(s)	201, 211, 277
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	2 cut(s)	6, 130
BspOI	GCTAGC	1 cut(s)	206
BspT104I	TTCGAA	1 cut(s)	230
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	2 cut(s)	132, 298
BssMI	GATC	3 cut(s)	12, 100, 268
BssT1I	CCWWGG	2 cut(s)	132, 298
Bst4CI	ACNGT	1 cut(s)	164
BstBI	TTCGAA	1 cut(s)	230
BstC8I	GCNNGC	2 cut(s)	114, 204
BstDEI	CTNAG	6 cut(s)	40, 86, 146, 198, 209, 285
BstF5I	GGATG	1 cut(s)	226
BstFNI	CGCG	1 cut(s)	17
BstKTI	GATC	3 cut(s)	15, 103, 271
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	3 cut(s)	12, 100, 268
BstNSI	RCATGY	1 cut(s)	116
BstUI	CGCG	1 cut(s)	17
BstXI	CCANNNNNNTGG	1 cut(s)	320
Bsu36I	CCTNAGG	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	226
BtsIMutI	CAGTG	1 cut(s)	206
Cac8I	GCNNGC	2 cut(s)	114, 204
Cfr13I	GGNCC	1 cut(s)	36
CseI	GACGC	1 cut(s)	6
Csp6I	GTAC	1 cut(s)	150
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	4 cut(s)	77, 131, 202, 260
CviKI_1	RGCY	4 cut(s)	77, 131, 202, 260
CviQI	GTAC	1 cut(s)	150
DdeI	CTNAG	6 cut(s)	40, 86, 146, 198, 209, 285
DpnI	GATC	3 cut(s)	14, 102, 270
DpnII	GATC	3 cut(s)	12, 100, 268
Eco130I	CCWWGG	2 cut(s)	132, 298
Eco47I	GGWCC	1 cut(s)	36
Eco81I	CCTNAGG	1 cut(s)	40
EcoO109I	RGGNCCY	1 cut(s)	36
EcoT14I	CCWWGG	2 cut(s)	132, 298
ErhI	CCWWGG	2 cut(s)	132, 298
FaeI	CATG	1 cut(s)	116
FaiI	YATR	4 cut(s)	51, 114, 315, 317
FatI	CATG	1 cut(s)	112
FauNDI	CATATG	1 cut(s)	315
FbaI	TGATCA	1 cut(s)	100
FokI	GGATG	1 cut(s)	233
FspBI	CTAG	1 cut(s)	203
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	1 cut(s)	78
HgaI	GACGC	1 cut(s)	6
Hin1II	CATG	1 cut(s)	116
HinfI	GANTC	3 cut(s)	90, 169, 224
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	2 cut(s)	143, 242
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	2 cut(s)	21, 248
Hpy8I	GTNNAC	2 cut(s)	143, 242
Hpy99I	CGWCG	2 cut(s)	22, 249
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	1 cut(s)	112
HpyF3I	CTNAG	6 cut(s)	40, 86, 146, 198, 209, 285
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	1 cut(s)	116
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	3 cut(s)	12, 100, 268
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	3 cut(s)	91, 222, 274
MaeI	CTAG	1 cut(s)	203
MaeII	ACGT	1 cut(s)	244
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	3 cut(s)	14, 102, 270
MboI	GATC	3 cut(s)	12, 100, 268
MboII	GAAGA	2 cut(s)	22, 219
MluCI	AATT	1 cut(s)	366
MnlI	CCTC	2 cut(s)	67, 344
MspI	CCGG	1 cut(s)	78
MvnI	CGCG	1 cut(s)	17
NdeI	CATATG	1 cut(s)	315
NdeII	GATC	3 cut(s)	12, 100, 268
NheI	GCTAGC	1 cut(s)	202
NlaIII	CATG	1 cut(s)	116
NlaIV	GGNNCC	2 cut(s)	6, 130
NmuCI	GTSAC	1 cut(s)	248
NspI	RCATGY	1 cut(s)	116
NspV	TTCGAA	1 cut(s)	230
PaeI	GCATGC	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	1 cut(s)	253
PfeI	GAWTC	3 cut(s)	90, 169, 224
PpuMI	RGGWCCY	1 cut(s)	36
Psp5II	RGGWCCY	1 cut(s)	36
PspN4I	GGNNCC	2 cut(s)	6, 130
PspPI	GGNCC	1 cut(s)	36
PspPPI	RGGWCCY	1 cut(s)	36
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
Sau3AI	GATC	3 cut(s)	12, 100, 268
Sau96I	GGNCC	1 cut(s)	36
ScaI	AGTACT	1 cut(s)	151
SetI	ASST	6 cut(s)	38, 204, 247, 280, 304, 355
SfuI	TTCGAA	1 cut(s)	230
SinI	GGWCC	1 cut(s)	36
SphI	GCATGC	1 cut(s)	116
Sse9I	AATT	1 cut(s)	366
SspMI	CTAG	1 cut(s)	203
StyI	CCWWGG	2 cut(s)	132, 298
TaaI	ACNGT	1 cut(s)	164
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	2 cut(s)	20, 230
TasI	AATT	1 cut(s)	366
TatI	WGTACW	1 cut(s)	149
TfiI	GAWTC	3 cut(s)	90, 169, 224
TscAI	CASTG	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	248
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	1 cut(s)	237
TspRI	CASTG	1 cut(s)	213
VpaK11BI	GGWCC	1 cut(s)	36
XapI	RAATTY	1 cut(s)	366
XceI	RCATGY	1 cut(s)	116
XspI	CTAG	1 cut(s)	203
ZrmI	AGTACT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.