Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 720 |
| AarI | CACCTGC | 1 cut(s) | 1473 |
| Acc16I | TGCGCA | 1 cut(s) | 285 |
| Acc36I | ACCTGC | 4 cut(s) | 115, 1335, 1473, 1734 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1246, 2189 |
| AccBSI | CCGCTC | 1 cut(s) | 1787 |
| AccI | GTMKAC | 1 cut(s) | 103 |
| AciI | CCGC | 8 cut(s) | 302, 672, 847, 850, 1042, 1787, 1856, 1859 |
| AclWI | GGATC | 3 cut(s) | 1277, 1937, 2590 |
| AcoI | YGGCCR | 5 cut(s) | 759, 1043, 1049, 1772, 2393 |
| AcsI | RAATTY | 3 cut(s) | 61, 2194, 2554 |
| AcuI | CTGAAG | 4 cut(s) | 1247, 2142, 2501, 2559 |
| AdeI | CACNNNGTG | 1 cut(s) | 244 |
| AfaI | GTAC | 4 cut(s) | 412, 767, 1238, 2594 |
| AflII | CTTAAG | 1 cut(s) | 1037 |
| AflIII | ACRYGT | 1 cut(s) | 1233 |
| AgsI | TTSAA | 9 cut(s) | 61, 693, 827, 989, 1409, 1418, 1644, 1796, 2303 |
| AhlI | ACTAGT | 1 cut(s) | 407 |
| AjiI | CACGTC | 1 cut(s) | 1611 |
| AjnI | CCWGG | 8 cut(s) | 36, 725, 756, 1054, 1239, 1836, 1903, 2390 |
| AleI | CACNNNNGTG | 1 cut(s) | 1114 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 534, 566 |
| Alw21I | GWGCWC | 2 cut(s) | 1919, 2081 |
| Alw26I | GTCTC | 5 cut(s) | 260, 1131, 1389, 1552, 1694 |
| AlwI | GGATC | 3 cut(s) | 1277, 1937, 2590 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2090 |
| Ama87I | CYCGRG | 3 cut(s) | 2378, 2548, 2588 |
| ApoI | RAATTY | 3 cut(s) | 61, 2194, 2554 |
| AseI | ATTAAT | 1 cut(s) | 1754 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1747, 1800 |
| AspLEI | GCGC | 1 cut(s) | 286 |
| AspS9I | GGNCC | 6 cut(s) | 89, 1275, 1853, 2170, 2220, 2317 |
| AsuC2I | CCSGG | 1 cut(s) | 440 |
| AsuHPI | GGTGA | 4 cut(s) | 700, 1581, 1977, 2427 |
| AvaI | CYCGRG | 3 cut(s) | 2378, 2548, 2588 |
| AvaII | GGWCC | 4 cut(s) | 89, 1853, 2220, 2317 |
| AxyI | CCTNAGG | 1 cut(s) | 1031 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 394, 427 |
| BalI | TGGCCA | 3 cut(s) | 761, 1051, 1774 |
| BbsI | GAAGAC | 1 cut(s) | 2148 |
| Bbv12I | GWGCWC | 2 cut(s) | 1919, 2081 |
| BccI | CCATC | 9 cut(s) | 745, 1024, 1366, 1434, 1600, 1676, 1783, 1877, 1962 |
| BceAI | ACGGC | 3 cut(s) | 105, 343, 1262 |
| BciT130I | CCWGG | 8 cut(s) | 38, 727, 758, 1056, 1241, 1838, 1905, 2392 |
| BciVI | GTATCC | 2 cut(s) | 602, 1023 |
| BclI | TGATCA | 1 cut(s) | 1522 |
| BcnI | CCSGG | 1 cut(s) | 440 |
| BcoDI | GTCTC | 5 cut(s) | 260, 1131, 1389, 1552, 1694 |
| BcuI | ACTAGT | 1 cut(s) | 407 |
| BfaI | CTAG | 5 cut(s) | 408, 732, 884, 1740, 2471 |
| BfmI | CTRYAG | 6 cut(s) | 498, 675, 1313, 1466, 2082, 2150 |
| BfrI | CTTAAG | 1 cut(s) | 1037 |
| BfuAI | ACCTGC | 4 cut(s) | 115, 1335, 1473, 1734 |
| BfuI | GTATCC | 2 cut(s) | 602, 1023 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 484, 2304 |
| BmcAI | AGTACT | 1 cut(s) | 2594 |
| Bme1390I | CCNGG | 9 cut(s) | 38, 440, 727, 758, 1056, 1241, 1838, 1905, 2392 |
| Bme18I | GGWCC | 4 cut(s) | 89, 1853, 2220, 2317 |
| BmeT110I | CYCGRG | 3 cut(s) | 2378, 2548, 2588 |
| BmgBI | CACGTC | 1 cut(s) | 1611 |
| BmgT120I | GGNCC | 6 cut(s) | 89, 1275, 1853, 2170, 2220, 2317 |
| BmiI | GGNNCC | 6 cut(s) | 91, 862, 1652, 1854, 2221, 2319 |
| BmrFI | CCNGG | 9 cut(s) | 38, 440, 727, 758, 1056, 1241, 1838, 1905, 2392 |
| BmrI | ACTGGG | 1 cut(s) | 1579 |
| BmuI | ACTGGG | 1 cut(s) | 1579 |
| BpiI | GAAGAC | 1 cut(s) | 2148 |
| BpmI | CTGGAG | 3 cut(s) | 561, 1155, 1833 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1094 |
| BpuEI | CTTGAG | 1 cut(s) | 123 |
| BpuMI | CCSGG | 1 cut(s) | 440 |
| BsaI | GGTCTC | 2 cut(s) | 260, 1131 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 534, 564 |
| Bse118I | RCCGGY | 2 cut(s) | 86, 2538 |
| Bse1I | ACTGG | 7 cut(s) | 399, 537, 874, 917, 1138, 1585, 2124 |
| Bse21I | CCTNAGG | 1 cut(s) | 1031 |
| Bse3DI | GCAATG | 1 cut(s) | 1889 |
| BseBI | CCWGG | 8 cut(s) | 38, 727, 758, 1056, 1241, 1838, 1905, 2392 |
| BseGI | GGATG | 7 cut(s) | 190, 629, 822, 1194, 1717, 2013, 2389 |
| BseMI | GCAATG | 1 cut(s) | 1889 |
| BseMII | CTCAG | 3 cut(s) | 1457, 1469, 1889 |
| BseNI | ACTGG | 7 cut(s) | 399, 537, 874, 917, 1138, 1585, 2124 |
| BseRI | GAGGAG | 4 cut(s) | 1140, 1982, 2037, 2366 |
| BseYI | CCCAGC | 3 cut(s) | 933, 950, 1340 |
| BsgI | GTGCAG | 1 cut(s) | 2468 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1919, 2081 |
| BsiHKCI | CYCGRG | 3 cut(s) | 2378, 2548, 2588 |
| BsiSI | CCGG | 6 cut(s) | 87, 439, 595, 2396, 2508, 2539 |
| BslFI | GGGAC | 7 cut(s) | 75, 675, 950, 958, 1291, 1866, 2474 |
| BsmAI | GTCTC | 5 cut(s) | 260, 1131, 1389, 1552, 1694 |
| BsmFI | GGGAC | 7 cut(s) | 75, 675, 950, 958, 1291, 1866, 2474 |
| Bso31I | GGTCTC | 2 cut(s) | 260, 1131 |
| BsoBI | CYCGRG | 3 cut(s) | 2378, 2548, 2588 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1919, 2081 |
| Bsp143I | GATC | 6 cut(s) | 1282, 1522, 1942, 2327, 2353, 2582 |
| Bsp19I | CCATGG | 3 cut(s) | 415, 1046, 1184 |
| BspACI | CCGC | 8 cut(s) | 302, 672, 847, 850, 1042, 1787, 1856, 1859 |
| BspCNI | CTCAG | 3 cut(s) | 1456, 1468, 1888 |
| BspLI | GGNNCC | 6 cut(s) | 91, 862, 1652, 1854, 2221, 2319 |
| BspMAI | CTGCAG | 4 cut(s) | 679, 1317, 1470, 2154 |
| BspMI | ACCTGC | 4 cut(s) | 115, 1335, 1473, 1734 |
| BspPI | GGATC | 3 cut(s) | 1277, 1937, 2590 |
| BspTI | CTTAAG | 1 cut(s) | 1037 |
| BspTNI | GGTCTC | 2 cut(s) | 260, 1131 |
| BsrBI | CCGCTC | 1 cut(s) | 1787 |
| BsrDI | GCAATG | 1 cut(s) | 1889 |
| BsrFI | RCCGGY | 2 cut(s) | 86, 2538 |
| BsrI | ACTGG | 7 cut(s) | 399, 537, 874, 917, 1138, 1585, 2124 |
| BssAI | RCCGGY | 2 cut(s) | 86, 2538 |
| BssMI | GATC | 6 cut(s) | 1282, 1522, 1942, 2327, 2353, 2582 |
| BssT1I | CCWWGG | 5 cut(s) | 415, 586, 1046, 1184, 1196 |
| Bst2UI | CCWGG | 8 cut(s) | 38, 727, 758, 1056, 1241, 1838, 1905, 2392 |
| Bst4CI | ACNGT | 4 cut(s) | 149, 619, 1142, 1848 |
| Bst6I | CTCTTC | 3 cut(s) | 16, 1555, 1806 |
| BstAFI | CTTAAG | 1 cut(s) | 1037 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 683, 1477 |
| BstDEI | CTNAG | 7 cut(s) | 1031, 1094, 1443, 1455, 1779, 1875, 2018 |
| BstDSI | CCRYGG | 4 cut(s) | 415, 1046, 1141, 1184 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2227 |
| BstF5I | GGATG | 7 cut(s) | 190, 629, 822, 1194, 1717, 2013, 2389 |
| BstHHI | GCGC | 1 cut(s) | 286 |
| BstKTI | GATC | 6 cut(s) | 1285, 1525, 1945, 2330, 2356, 2585 |
| BstMAI | GTCTC | 5 cut(s) | 260, 1131, 1389, 1552, 1694 |
| BstMBI | GATC | 6 cut(s) | 1282, 1522, 1942, 2327, 2353, 2582 |
| BstNI | CCWGG | 8 cut(s) | 38, 727, 758, 1056, 1241, 1838, 1905, 2392 |
| BstNSI | RCATGY | 5 cut(s) | 80, 257, 655, 1237, 1738 |
| BstSCI | CCNGG | 9 cut(s) | 36, 438, 725, 756, 1054, 1239, 1836, 1903, 2390 |
| BstSFI | CTRYAG | 6 cut(s) | 498, 675, 1313, 1466, 2082, 2150 |
| BstV2I | GAAGAC | 1 cut(s) | 2148 |
| BstX2I | RGATCY | 1 cut(s) | 1282 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1116 |
| BstYI | RGATCY | 1 cut(s) | 1282 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1031 |
| BsuI | GTATCC | 2 cut(s) | 602, 1023 |
| BtgI | CCRYGG | 4 cut(s) | 415, 1046, 1141, 1184 |
| BtrI | CACGTC | 1 cut(s) | 1611 |
| BtsCI | GGATG | 7 cut(s) | 190, 629, 822, 1194, 1717, 2013, 2389 |
| BtsIMutI | CAGTG | 4 cut(s) | 154, 406, 910, 2583 |
| BveI | ACCTGC | 4 cut(s) | 115, 1335, 1473, 1734 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2090 |
| CfoI | GCGC | 1 cut(s) | 286 |
| Cfr10I | RCCGGY | 2 cut(s) | 86, 2538 |
| Cfr13I | GGNCC | 6 cut(s) | 89, 1275, 1853, 2170, 2220, 2317 |
| Csp6I | GTAC | 4 cut(s) | 411, 766, 1237, 2593 |
| CviQI | GTAC | 4 cut(s) | 411, 766, 1237, 2593 |
| DdeI | CTNAG | 7 cut(s) | 1031, 1094, 1443, 1455, 1779, 1875, 2018 |
| DpnI | GATC | 6 cut(s) | 1284, 1524, 1944, 2329, 2355, 2584 |
| DpnII | GATC | 6 cut(s) | 1282, 1522, 1942, 2327, 2353, 2582 |
| DraIII | CACNNNGTG | 1 cut(s) | 244 |
| EaeI | YGGCCR | 5 cut(s) | 759, 1043, 1049, 1772, 2393 |
| Eam1104I | CTCTTC | 3 cut(s) | 16, 1555, 1806 |
| EarI | CTCTTC | 3 cut(s) | 16, 1555, 1806 |
| EciI | GGCGGA | 1 cut(s) | 836 |
| Eco130I | CCWWGG | 5 cut(s) | 415, 586, 1046, 1184, 1196 |
| Eco147I | AGGCCT | 1 cut(s) | 2469 |
| Eco31I | GGTCTC | 2 cut(s) | 260, 1131 |
| Eco47I | GGWCC | 4 cut(s) | 89, 1853, 2220, 2317 |
| Eco57I | CTGAAG | 4 cut(s) | 1247, 2142, 2501, 2559 |
| Eco81I | CCTNAGG | 1 cut(s) | 1031 |
| Eco88I | CYCGRG | 3 cut(s) | 2378, 2548, 2588 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2227 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2220, 2317 |
| EcoRI | GAATTC | 1 cut(s) | 61 |
| EcoRII | CCWGG | 8 cut(s) | 36, 725, 756, 1054, 1239, 1836, 1903, 2390 |
| EcoT14I | CCWWGG | 5 cut(s) | 415, 586, 1046, 1184, 1196 |
| EcoT22I | ATGCAT | 1 cut(s) | 255 |
| ErhI | CCWWGG | 5 cut(s) | 415, 586, 1046, 1184, 1196 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1077, 1109 |
| FaqI | GGGAC | 7 cut(s) | 75, 675, 950, 958, 1291, 1866, 2474 |
| FbaI | TGATCA | 1 cut(s) | 1522 |
| FblI | GTMKAC | 1 cut(s) | 103 |
| FokI | GGATG | 7 cut(s) | 197, 616, 829, 1201, 1724, 2020, 2396 |
| FspBI | CTAG | 5 cut(s) | 408, 732, 884, 1740, 2471 |
| FspI | TGCGCA | 1 cut(s) | 285 |
| GlaI | GCGC | 1 cut(s) | 285 |
| GsaI | CCCAGC | 3 cut(s) | 937, 954, 1344 |
| GsuI | CTGGAG | 3 cut(s) | 561, 1155, 1833 |
| HapII | CCGG | 6 cut(s) | 87, 439, 595, 2396, 2508, 2539 |
| HhaI | GCGC | 1 cut(s) | 286 |
| Hin6I | GCGC | 1 cut(s) | 284 |
| HinP1I | GCGC | 1 cut(s) | 284 |
| HincII | GTYRAC | 2 cut(s) | 233, 1622 |
| HindII | GTYRAC | 2 cut(s) | 233, 1622 |
| HindIII | AAGCTT | 1 cut(s) | 208 |
| HpaII | CCGG | 6 cut(s) | 87, 439, 595, 2396, 2508, 2539 |
| HphI | GGTGA | 4 cut(s) | 700, 1581, 1977, 2427 |
| Hpy166II | GTNNAC | 5 cut(s) | 104, 152, 233, 1622, 2209 |
| Hpy188I | TCNGA | 7 cut(s) | 67, 742, 1158, 1446, 1878, 2161, 2481 |
| Hpy188III | TCNNGA | 8 cut(s) | 265, 562, 1265, 1418, 1812, 2227, 2357, 2550 |
| Hpy8I | GTNNAC | 5 cut(s) | 104, 152, 233, 1622, 2209 |
| HpyCH4III | ACNGT | 4 cut(s) | 149, 619, 1142, 1848 |
| HpyCH4IV | ACGT | 3 cut(s) | 1304, 1610, 2166 |
| HpyF3I | CTNAG | 7 cut(s) | 1031, 1094, 1443, 1455, 1779, 1875, 2018 |
| HpySE526I | ACGT | 3 cut(s) | 1304, 1610, 2166 |
| HspAI | GCGC | 1 cut(s) | 284 |
| KroI | GCCGGC | 1 cut(s) | 2538 |
| KroNI | GCCGGC | 1 cut(s) | 2540 |
| Ksp22I | TGATCA | 1 cut(s) | 1522 |
| Kzo9I | GATC | 6 cut(s) | 1282, 1522, 1942, 2327, 2353, 2582 |
| MaeI | CTAG | 5 cut(s) | 408, 732, 884, 1740, 2471 |
| MaeII | ACGT | 3 cut(s) | 1304, 1610, 2166 |
| MalI | GATC | 6 cut(s) | 1284, 1524, 1944, 2329, 2355, 2584 |
| MbiI | CCGCTC | 1 cut(s) | 1787 |
| MboI | GATC | 6 cut(s) | 1282, 1522, 1942, 2327, 2353, 2582 |
| MfeI | CAATTG | 2 cut(s) | 1475, 1791 |
| MflI | RGATCY | 1 cut(s) | 1282 |
| MhlI | GDGCHC | 2 cut(s) | 1919, 2081 |
| MlsI | TGGCCA | 3 cut(s) | 761, 1051, 1774 |
| MluCI | AATT | 8 cut(s) | 61, 904, 1475, 1747, 1791, 2068, 2194, 2554 |
| MluNI | TGGCCA | 3 cut(s) | 761, 1051, 1774 |
| MlyI | GAGTC | 4 cut(s) | 1391, 1441, 1696, 2540 |
| MmeI | TCCRAC | 3 cut(s) | 1475, 1746, 2292 |
| Mox20I | TGGCCA | 3 cut(s) | 761, 1051, 1774 |
| Mph1103I | ATGCAT | 1 cut(s) | 255 |
| MroNI | GCCGGC | 1 cut(s) | 2538 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1747, 1800 |
| MscI | TGGCCA | 3 cut(s) | 761, 1051, 1774 |
| MseI | TTAA | 5 cut(s) | 771, 995, 1038, 1754, 2202 |
| MslI | CAYNNNNRTG | 3 cut(s) | 81, 258, 1114 |
| Msp20I | TGGCCA | 3 cut(s) | 761, 1051, 1774 |
| MspA1I | CMGCKG | 2 cut(s) | 674, 950 |
| MspCI | CTTAAG | 1 cut(s) | 1037 |
| MspI | CCGG | 6 cut(s) | 87, 439, 595, 2396, 2508, 2539 |
| MspR9I | CCNGG | 9 cut(s) | 38, 440, 727, 758, 1056, 1241, 1838, 1905, 2392 |
| MunI | CAATTG | 2 cut(s) | 1475, 1791 |
| MvaI | CCWGG | 8 cut(s) | 38, 727, 758, 1056, 1241, 1838, 1905, 2392 |
| NaeI | GCCGGC | 1 cut(s) | 2540 |
| NciI | CCSGG | 1 cut(s) | 440 |
| NcoI | CCATGG | 3 cut(s) | 415, 1046, 1184 |
| NdeII | GATC | 6 cut(s) | 1282, 1522, 1942, 2327, 2353, 2582 |
| NgoMIV | GCCGGC | 1 cut(s) | 2538 |
| NlaIV | GGNNCC | 6 cut(s) | 91, 862, 1652, 1854, 2221, 2319 |
| NmuCI | GTSAC | 8 cut(s) | 143, 244, 401, 878, 1177, 1434, 1587, 1611 |
| NsbI | TGCGCA | 1 cut(s) | 285 |
| NsiI | ATGCAT | 1 cut(s) | 255 |
| NspI | RCATGY | 5 cut(s) | 80, 257, 655, 1237, 1738 |
| OliI | CACNNNNGTG | 1 cut(s) | 1114 |
| PaeI | GCATGC | 3 cut(s) | 80, 257, 655 |
| PaeR7I | CTCGAG | 2 cut(s) | 2548, 2588 |
| PaqCI | CACCTGC | 1 cut(s) | 1473 |
| PasI | CCCWGGG | 1 cut(s) | 726 |
| PceI | AGGCCT | 1 cut(s) | 2469 |
| PciI | ACATGT | 1 cut(s) | 1233 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1301 |
| PdiI | GCCGGC | 1 cut(s) | 2540 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1747, 1800 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1246, 2189 |
| PleI | GAGTC | 4 cut(s) | 1390, 1441, 1695, 2540 |
| PpsI | GAGTC | 4 cut(s) | 1390, 1441, 1695, 2540 |
| PpuMI | RGGWCCY | 2 cut(s) | 2220, 2317 |
| PscI | ACATGT | 1 cut(s) | 1233 |
| PshBI | ATTAAT | 1 cut(s) | 1754 |
| PsiI | TTATAA | 1 cut(s) | 720 |
| Psp5II | RGGWCCY | 2 cut(s) | 2220, 2317 |
| Psp6I | CCWGG | 8 cut(s) | 36, 725, 756, 1054, 1239, 1836, 1903, 2390 |
| PspFI | CCCAGC | 3 cut(s) | 933, 950, 1340 |
| PspGI | CCWGG | 8 cut(s) | 36, 725, 756, 1054, 1239, 1836, 1903, 2390 |
| PspN4I | GGNNCC | 6 cut(s) | 91, 862, 1652, 1854, 2221, 2319 |
| PspPI | GGNCC | 6 cut(s) | 89, 1275, 1853, 2170, 2220, 2317 |
| PspPPI | RGGWCCY | 2 cut(s) | 2220, 2317 |
| PspXI | VCTCGAGB | 1 cut(s) | 2588 |
| PstI | CTGCAG | 4 cut(s) | 679, 1317, 1470, 2154 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2090 |
| PsuI | RGATCY | 1 cut(s) | 1282 |
| PvuII | CAGCTG | 1 cut(s) | 950 |
| RsaI | GTAC | 4 cut(s) | 412, 767, 1238, 2594 |
| RsaNI | GTAC | 4 cut(s) | 411, 766, 1237, 2593 |
| RseI | CAYNNNNRTG | 3 cut(s) | 81, 258, 1114 |
| SaqAI | TTAA | 5 cut(s) | 771, 995, 1038, 1754, 2202 |
| Sau3AI | GATC | 6 cut(s) | 1282, 1522, 1942, 2327, 2353, 2582 |
| Sau96I | GGNCC | 6 cut(s) | 89, 1275, 1853, 2170, 2220, 2317 |
| ScaI | AGTACT | 1 cut(s) | 2594 |
| SchI | GAGTC | 4 cut(s) | 1391, 1441, 1696, 2540 |
| ScrFI | CCNGG | 9 cut(s) | 38, 440, 727, 758, 1056, 1241, 1838, 1905, 2392 |
| SduI | GDGCHC | 2 cut(s) | 1919, 2081 |
| SfcI | CTRYAG | 6 cut(s) | 498, 675, 1313, 1466, 2082, 2150 |
| Sfr274I | CTCGAG | 2 cut(s) | 2548, 2588 |
| SinI | GGWCC | 4 cut(s) | 89, 1853, 2220, 2317 |
| SlaI | CTCGAG | 2 cut(s) | 2548, 2588 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 81, 258, 1114 |
| SmlI | CTYRAG | 4 cut(s) | 138, 1037, 2548, 2588 |
| SmoI | CTYRAG | 4 cut(s) | 138, 1037, 2548, 2588 |
| SpeI | ACTAGT | 1 cut(s) | 407 |
| SphI | GCATGC | 3 cut(s) | 80, 257, 655 |
| Sse9I | AATT | 8 cut(s) | 61, 904, 1475, 1747, 1791, 2068, 2194, 2554 |
| SseBI | AGGCCT | 1 cut(s) | 2469 |
| SsiI | CCGC | 8 cut(s) | 302, 672, 847, 850, 1042, 1787, 1856, 1859 |
| SspMI | CTAG | 5 cut(s) | 408, 732, 884, 1740, 2471 |
| StuI | AGGCCT | 1 cut(s) | 2469 |
| StyD4I | CCNGG | 9 cut(s) | 36, 438, 725, 756, 1054, 1239, 1836, 1903, 2390 |
| StyI | CCWWGG | 5 cut(s) | 415, 586, 1046, 1184, 1196 |
| TaaI | ACNGT | 4 cut(s) | 149, 619, 1142, 1848 |
| TaiI | ACGT | 3 cut(s) | 1307, 1613, 2169 |
| TaqI | TCGA | 4 cut(s) | 264, 1123, 2549, 2589 |
| TaqII | GACCGA | 1 cut(s) | 284 |
| TasI | AATT | 8 cut(s) | 61, 904, 1475, 1747, 1791, 2068, 2194, 2554 |
| TatI | WGTACW | 2 cut(s) | 765, 2592 |
| TauI | GCSGC | 5 cut(s) | 674, 852, 1045, 1790, 1861 |
| Tru1I | TTAA | 5 cut(s) | 771, 995, 1038, 1754, 2202 |
| Tru9I | TTAA | 5 cut(s) | 771, 995, 1038, 1754, 2202 |
| TscAI | CASTG | 4 cut(s) | 154, 406, 917, 2583 |
| TseFI | GTSAC | 8 cut(s) | 143, 244, 401, 878, 1177, 1434, 1587, 1611 |
| Tsp45I | GTSAC | 8 cut(s) | 143, 244, 401, 878, 1177, 1434, 1587, 1611 |
| TspGWI | ACGGA | 2 cut(s) | 622, 1011 |
| TspRI | CASTG | 4 cut(s) | 154, 406, 917, 2583 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1246, 2189 |
| Vha464I | CTTAAG | 1 cut(s) | 1037 |
| VpaK11BI | GGWCC | 4 cut(s) | 89, 1853, 2220, 2317 |
| VspI | ATTAAT | 1 cut(s) | 1754 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2227 |
| XapI | RAATTY | 3 cut(s) | 61, 2194, 2554 |
| XceI | RCATGY | 5 cut(s) | 80, 257, 655, 1237, 1738 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 178, 1961 |
| XhoI | CTCGAG | 2 cut(s) | 2548, 2588 |
| XmiI | GTMKAC | 1 cut(s) | 103 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1747, 1800 |
| XspI | CTAG | 5 cut(s) | 408, 732, 884, 1740, 2471 |
| ZrmI | AGTACT | 1 cut(s) | 2594 |
| Zsp2I | ATGCAT | 1 cut(s) | 255 |