Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 819 |
| Acc16I | TGCGCA | 1 cut(s) | 2402 |
| Acc36I | ACCTGC | 2 cut(s) | 160, 1289 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2039 |
| AccI | GTMKAC | 3 cut(s) | 144, 345, 1303 |
| AccII | CGCG | 1 cut(s) | 101 |
| AccIII | TCCGGA | 1 cut(s) | 1949 |
| AciI | CCGC | 9 cut(s) | 101, 152, 326, 414, 454, 710, 907, 1091, 2567 |
| AclI | AACGTT | 1 cut(s) | 2541 |
| AclWI | GGATC | 8 cut(s) | 537, 1214, 1887, 1900, 1989, 2066, 2441, 2454 |
| AcoI | YGGCCR | 2 cut(s) | 858, 1148 |
| AcsI | RAATTY | 6 cut(s) | 76, 223, 551, 842, 1003, 2378 |
| AcuI | CTGAAG | 5 cut(s) | 1157, 1424, 1469, 1610, 2271 |
| AcvI | CACGTG | 1 cut(s) | 890 |
| AcyI | GRCGYC | 1 cut(s) | 1262 |
| AdeI | CACNNNGTG | 1 cut(s) | 259 |
| AfaI | GTAC | 3 cut(s) | 961, 1112, 2051 |
| AflIII | ACRYGT | 2 cut(s) | 887, 889 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 798 |
| AjnI | CCWGG | 5 cut(s) | 855, 1245, 1265, 2038, 2058 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1662, 1694 |
| AleI | CACNNNNGTG | 1 cut(s) | 1195 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 432, 464 |
| Alw21I | GWGCWC | 2 cut(s) | 2019, 2412 |
| AlwI | GGATC | 8 cut(s) | 537, 1214, 1887, 1900, 1989, 2066, 2441, 2454 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1337, 1588, 2652 |
| Aor13HI | TCCGGA | 1 cut(s) | 1949 |
| AoxI | GGCC | 7 cut(s) | 104, 571, 858, 1148, 2425, 2434, 2596 |
| ApoI | RAATTY | 6 cut(s) | 76, 223, 551, 842, 1003, 2378 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 549, 581, 1688, 1720 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2170 |
| AspLEI | GCGC | 4 cut(s) | 101, 1017, 1189, 2403 |
| AspS9I | GGNCC | 3 cut(s) | 104, 2299, 2349 |
| AsuC2I | CCSGG | 2 cut(s) | 31, 2486 |
| AsuHPI | GGTGA | 3 cut(s) | 653, 1181, 2522 |
| AsuII | TTCGAA | 1 cut(s) | 694 |
| AvaII | GGWCC | 2 cut(s) | 2299, 2349 |
| AxyI | CCTNAGG | 1 cut(s) | 51 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 943, 976 |
| BalI | TGGCCA | 2 cut(s) | 860, 1150 |
| BamHI | GGATCC | 2 cut(s) | 1892, 2446 |
| BanII | GRGCYC | 3 cut(s) | 2019, 2412, 2717 |
| BbrPI | CACGTG | 1 cut(s) | 890 |
| BbsI | GAAGAC | 6 cut(s) | 12, 18, 755, 1398, 1698, 2277 |
| Bbv12I | GWGCWC | 2 cut(s) | 2019, 2412 |
| BccI | CCATC | 7 cut(s) | 597, 844, 1159, 1160, 1288, 1856, 1954 |
| BceAI | ACGGC | 4 cut(s) | 441, 709, 1295, 2170 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2392, 2426 |
| BciT130I | CCWGG | 5 cut(s) | 857, 1247, 1267, 2040, 2060 |
| BciVI | GTATCC | 1 cut(s) | 2130 |
| BclI | TGATCA | 1 cut(s) | 1558 |
| BcnI | CCSGG | 2 cut(s) | 31, 2486 |
| BfaI | CTAG | 2 cut(s) | 426, 825 |
| BfmI | CTRYAG | 4 cut(s) | 357, 774, 1047, 2126 |
| BfoI | RGCGCY | 1 cut(s) | 1018 |
| BfuAI | ACCTGC | 2 cut(s) | 160, 1289 |
| BfuI | GTATCC | 1 cut(s) | 2130 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 583, 2433 |
| BmcAI | AGTACT | 1 cut(s) | 2051 |
| Bme1390I | CCNGG | 7 cut(s) | 31, 857, 1247, 1267, 2040, 2060, 2486 |
| Bme18I | GGWCC | 2 cut(s) | 2299, 2349 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 798 |
| BmgT120I | GGNCC | 3 cut(s) | 104, 2299, 2349 |
| BmiI | GGNNCC | 6 cut(s) | 105, 1202, 1894, 2350, 2448, 2716 |
| BmrFI | CCNGG | 7 cut(s) | 31, 857, 1247, 1267, 2040, 2060, 2486 |
| BpiI | GAAGAC | 6 cut(s) | 12, 18, 755, 1398, 1698, 2277 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1441, 1473 |
| BpmI | CTGGAG | 1 cut(s) | 1923 |
| Bpu14I | TTCGAA | 1 cut(s) | 694 |
| BpuEI | CTTGAG | 1 cut(s) | 2674 |
| BpuMI | CCSGG | 2 cut(s) | 31, 2486 |
| Bsa29I | ATCGAT | 1 cut(s) | 1292 |
| BsaAI | YACGTR | 2 cut(s) | 890, 2665 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1317 |
| BsaHI | GRCGYC | 1 cut(s) | 1262 |
| BsaWI | WCCGGW | 1 cut(s) | 1949 |
| Bse118I | RCCGGY | 1 cut(s) | 638 |
| Bse1I | ACTGG | 3 cut(s) | 973, 1894, 2370 |
| Bse21I | CCTNAGG | 1 cut(s) | 51 |
| Bse3DI | GCAATG | 3 cut(s) | 1332, 2224, 2701 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1317 |
| BseAI | TCCGGA | 1 cut(s) | 1949 |
| BseBI | CCWGG | 5 cut(s) | 857, 1247, 1267, 2040, 2060 |
| BseCI | ATCGAT | 1 cut(s) | 1292 |
| BseJI | GATNNNNATC | 1 cut(s) | 1317 |
| BseMI | GCAATG | 3 cut(s) | 1332, 2224, 2701 |
| BseNI | ACTGG | 3 cut(s) | 973, 1894, 2370 |
| BseRI | GAGGAG | 1 cut(s) | 471 |
| BseYI | CCCAGC | 5 cut(s) | 364, 374, 505, 1032, 2710 |
| BsgI | GTGCAG | 3 cut(s) | 480, 1323, 1574 |
| Bsh1236I | CGCG | 1 cut(s) | 101 |
| BshFI | GGCC | 7 cut(s) | 106, 573, 860, 1150, 2427, 2436, 2598 |
| BshVI | ATCGAT | 1 cut(s) | 1292 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2019, 2412 |
| BsiSI | CCGG | 4 cut(s) | 30, 639, 1950, 2485 |
| BslFI | GGGAC | 1 cut(s) | 2603 |
| BsmBI | CGTCTC | 1 cut(s) | 2121 |
| BsmFI | GGGAC | 1 cut(s) | 2603 |
| BsmI | GAATGC | 2 cut(s) | 909, 1189 |
| BsnI | GGCC | 7 cut(s) | 106, 573, 860, 1150, 2427, 2436, 2598 |
| Bsp119I | TTCGAA | 1 cut(s) | 694 |
| Bsp1286I | GDGCHC | 3 cut(s) | 2019, 2412, 2717 |
| Bsp13I | TCCGGA | 1 cut(s) | 1949 |
| Bsp143I | GATC | 8 cut(s) | 529, 1219, 1558, 1892, 1981, 2071, 2446, 2456 |
| Bsp19I | CCATGG | 1 cut(s) | 1145 |
| BspACI | CCGC | 9 cut(s) | 101, 152, 326, 414, 454, 710, 907, 1091, 2567 |
| BspANI | GGCC | 7 cut(s) | 106, 573, 860, 1150, 2427, 2436, 2598 |
| BspDI | ATCGAT | 1 cut(s) | 1292 |
| BspEI | TCCGGA | 1 cut(s) | 1949 |
| BspFNI | CGCG | 1 cut(s) | 101 |
| BspHI | TCATGA | 1 cut(s) | 535 |
| BspLI | GGNNCC | 6 cut(s) | 105, 1202, 1894, 2350, 2448, 2716 |
| BspMAI | CTGCAG | 3 cut(s) | 361, 778, 1051 |
| BspMI | ACCTGC | 2 cut(s) | 160, 1289 |
| BspPI | GGATC | 8 cut(s) | 537, 1214, 1887, 1900, 1989, 2066, 2441, 2454 |
| BspQI | GCTCTTC | 1 cut(s) | 691 |
| BspT104I | TTCGAA | 1 cut(s) | 694 |
| BsrDI | GCAATG | 3 cut(s) | 1332, 2224, 2701 |
| BsrFI | RCCGGY | 1 cut(s) | 638 |
| BsrI | ACTGG | 3 cut(s) | 973, 1894, 2370 |
| BssAI | RCCGGY | 1 cut(s) | 638 |
| BssMI | GATC | 8 cut(s) | 529, 1219, 1558, 1892, 1981, 2071, 2446, 2456 |
| BssNAI | GTATAC | 1 cut(s) | 346 |
| BssNI | GRCGYC | 1 cut(s) | 1262 |
| BssT1I | CCWWGG | 5 cut(s) | 1145, 1204, 1926, 2506, 2519 |
| Bst1107I | GTATAC | 1 cut(s) | 346 |
| Bst2UI | CCWGG | 5 cut(s) | 857, 1247, 1267, 2040, 2060 |
| Bst4CI | ACNGT | 4 cut(s) | 164, 718, 1383, 2001 |
| Bst6I | CTCTTC | 2 cut(s) | 691, 1392 |
| BstACI | GRCGYC | 1 cut(s) | 1262 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 782, 1337, 1364 |
| BstBAI | YACGTR | 2 cut(s) | 890, 2665 |
| BstBI | TTCGAA | 1 cut(s) | 694 |
| BstC8I | GCNNGC | 9 cut(s) | 93, 97, 123, 270, 357, 575, 752, 1752, 2465 |
| BstDSI | CCRYGG | 2 cut(s) | 1145, 1277 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 54, 2356 |
| BstFNI | CGCG | 1 cut(s) | 101 |
| BstH2I | RGCGCY | 1 cut(s) | 1018 |
| BstHHI | GCGC | 4 cut(s) | 101, 1017, 1189, 2403 |
| BstKTI | GATC | 8 cut(s) | 532, 1222, 1561, 1895, 1984, 2074, 2449, 2459 |
| BstMBI | GATC | 8 cut(s) | 529, 1219, 1558, 1892, 1981, 2071, 2446, 2456 |
| BstNI | CCWGG | 5 cut(s) | 857, 1247, 1267, 2040, 2060 |
| BstNSI | RCATGY | 4 cut(s) | 95, 272, 754, 2422 |
| BstSCI | CCNGG | 7 cut(s) | 29, 855, 1245, 1265, 2038, 2058, 2484 |
| BstSFI | CTRYAG | 4 cut(s) | 357, 774, 1047, 2126 |
| BstSNI | TACGTA | 1 cut(s) | 2665 |
| BstUI | CGCG | 1 cut(s) | 101 |
| BstV2I | GAAGAC | 6 cut(s) | 12, 18, 755, 1398, 1698, 2277 |
| BstX2I | RGATCY | 4 cut(s) | 529, 1219, 1892, 2446 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1197, 1253 |
| BstYI | RGATCY | 4 cut(s) | 529, 1219, 1892, 2446 |
| BstZ17I | GTATAC | 1 cut(s) | 346 |
| Bsu15I | ATCGAT | 1 cut(s) | 1292 |
| Bsu36I | CCTNAGG | 1 cut(s) | 51 |
| BsuI | GTATCC | 1 cut(s) | 2130 |
| BsuRI | GGCC | 7 cut(s) | 106, 573, 860, 1150, 2427, 2436, 2598 |
| BsuTUI | ATCGAT | 1 cut(s) | 1292 |
| BtgI | CCRYGG | 2 cut(s) | 1145, 1277 |
| BtgZI | GCGATG | 3 cut(s) | 1241, 1854, 2691 |
| BtsI | GCAGTG | 4 cut(s) | 1044, 1365, 2019, 2410 |
| BtsIMutI | CAGTG | 9 cut(s) | 169, 982, 1044, 1190, 1365, 1785, 2019, 2363, 2410 |
| BveI | ACCTGC | 2 cut(s) | 160, 1289 |
| Cac8I | GCNNGC | 9 cut(s) | 93, 97, 123, 270, 357, 575, 752, 1752, 2465 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1337, 1588, 2652 |
| CciI | TCATGA | 1 cut(s) | 535 |
| CfoI | GCGC | 4 cut(s) | 101, 1017, 1189, 2403 |
| Cfr10I | RCCGGY | 1 cut(s) | 638 |
| Cfr13I | GGNCC | 3 cut(s) | 104, 2299, 2349 |
| ClaI | ATCGAT | 1 cut(s) | 1292 |
| CseI | GACGC | 1 cut(s) | 1270 |
| Csp6I | GTAC | 3 cut(s) | 960, 1111, 2050 |
| CviQI | GTAC | 3 cut(s) | 960, 1111, 2050 |
| DpnI | GATC | 8 cut(s) | 531, 1221, 1560, 1894, 1983, 2073, 2448, 2458 |
| DpnII | GATC | 8 cut(s) | 529, 1219, 1558, 1892, 1981, 2071, 2446, 2456 |
| DraIII | CACNNNGTG | 1 cut(s) | 259 |
| DriI | GACNNNNNGTC | 1 cut(s) | 798 |
| EaeI | YGGCCR | 2 cut(s) | 858, 1148 |
| Eam1104I | CTCTTC | 2 cut(s) | 691, 1392 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 798 |
| EarI | CTCTTC | 2 cut(s) | 691, 1392 |
| Ecl136II | GAGCTC | 2 cut(s) | 2017, 2410 |
| Eco105I | TACGTA | 1 cut(s) | 2665 |
| Eco130I | CCWWGG | 5 cut(s) | 1145, 1204, 1926, 2506, 2519 |
| Eco147I | AGGCCT | 1 cut(s) | 2598 |
| Eco24I | GRGCYC | 3 cut(s) | 2019, 2412, 2717 |
| Eco47I | GGWCC | 2 cut(s) | 2299, 2349 |
| Eco53kI | GAGCTC | 2 cut(s) | 2017, 2410 |
| Eco57I | CTGAAG | 5 cut(s) | 1157, 1424, 1469, 1610, 2271 |
| Eco72I | CACGTG | 1 cut(s) | 890 |
| Eco81I | CCTNAGG | 1 cut(s) | 51 |
| EcoICRI | GAGCTC | 2 cut(s) | 2017, 2410 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 54, 2356 |
| EcoO109I | RGGNCCY | 2 cut(s) | 104, 2349 |
| EcoRI | GAATTC | 1 cut(s) | 76 |
| EcoRII | CCWGG | 5 cut(s) | 855, 1245, 1265, 2038, 2058 |
| EcoT14I | CCWWGG | 5 cut(s) | 1145, 1204, 1926, 2506, 2519 |
| EcoT22I | ATGCAT | 2 cut(s) | 270, 756 |
| EcoT38I | GRGCYC | 3 cut(s) | 2019, 2412, 2717 |
| ErhI | CCWWGG | 5 cut(s) | 1145, 1204, 1926, 2506, 2519 |
| Esp3I | CGTCTC | 1 cut(s) | 2121 |
| FaqI | GGGAC | 1 cut(s) | 2603 |
| FauI | CCCGC | 2 cut(s) | 94, 461 |
| FbaI | TGATCA | 1 cut(s) | 1558 |
| FblI | GTMKAC | 3 cut(s) | 144, 345, 1303 |
| FriOI | GRGCYC | 3 cut(s) | 2019, 2412, 2717 |
| FspBI | CTAG | 2 cut(s) | 426, 825 |
| FspI | TGCGCA | 1 cut(s) | 2402 |
| GlaI | GCGC | 4 cut(s) | 100, 1016, 1188, 2402 |
| GsaI | CCCAGC | 5 cut(s) | 368, 378, 509, 1036, 2714 |
| GsuI | CTGGAG | 1 cut(s) | 1923 |
| HaeII | RGCGCY | 1 cut(s) | 1018 |
| HaeIII | GGCC | 7 cut(s) | 106, 573, 860, 1150, 2427, 2436, 2598 |
| HapII | CCGG | 4 cut(s) | 30, 639, 1950, 2485 |
| HgaI | GACGC | 1 cut(s) | 1270 |
| HhaI | GCGC | 4 cut(s) | 101, 1017, 1189, 2403 |
| Hin1I | GRCGYC | 1 cut(s) | 1262 |
| Hin6I | GCGC | 4 cut(s) | 99, 1015, 1187, 2401 |
| HinP1I | GCGC | 4 cut(s) | 99, 1015, 1187, 2401 |
| HincII | GTYRAC | 3 cut(s) | 248, 2101, 2482 |
| HindII | GTYRAC | 3 cut(s) | 248, 2101, 2482 |
| HpaI | GTTAAC | 1 cut(s) | 2101 |
| HpaII | CCGG | 4 cut(s) | 30, 639, 1950, 2485 |
| HphI | GGTGA | 3 cut(s) | 653, 1181, 2522 |
| HpyCH4III | ACNGT | 4 cut(s) | 164, 718, 1383, 2001 |
| HpyCH4IV | ACGT | 4 cut(s) | 889, 1537, 2541, 2664 |
| HpySE526I | ACGT | 4 cut(s) | 889, 1537, 2541, 2664 |
| Hsp92I | GRCGYC | 1 cut(s) | 1262 |
| HspAI | GCGC | 4 cut(s) | 99, 1015, 1187, 2401 |
| Kpn2I | TCCGGA | 1 cut(s) | 1949 |
| Ksp22I | TGATCA | 1 cut(s) | 1558 |
| KspAI | GTTAAC | 1 cut(s) | 2101 |
| Kzo9I | GATC | 8 cut(s) | 529, 1219, 1558, 1892, 1981, 2071, 2446, 2456 |
| LguI | GCTCTTC | 1 cut(s) | 691 |
| LmnI | GCTCC | 6 cut(s) | 606, 1206, 1513, 1865, 1952, 2720 |
| MaeI | CTAG | 2 cut(s) | 426, 825 |
| MaeII | ACGT | 4 cut(s) | 889, 1537, 2541, 2664 |
| MaeIII | GTNAC | 7 cut(s) | 158, 259, 1533, 1920, 2361, 2510, 2654 |
| MalI | GATC | 8 cut(s) | 531, 1221, 1560, 1894, 1983, 2073, 2448, 2458 |
| MboI | GATC | 8 cut(s) | 529, 1219, 1558, 1892, 1981, 2071, 2446, 2456 |
| MfeI | CAATTG | 1 cut(s) | 1985 |
| MflI | RGATCY | 4 cut(s) | 529, 1219, 1892, 2446 |
| MhlI | GDGCHC | 3 cut(s) | 2019, 2412, 2717 |
| MlsI | TGGCCA | 2 cut(s) | 860, 1150 |
| MluNI | TGGCCA | 2 cut(s) | 860, 1150 |
| MlyI | GAGTC | 1 cut(s) | 1962 |
| MmeI | TCCRAC | 3 cut(s) | 1195, 1777, 1920 |
| Mox20I | TGGCCA | 2 cut(s) | 860, 1150 |
| Mph1103I | ATGCAT | 2 cut(s) | 270, 756 |
| MroI | TCCGGA | 1 cut(s) | 1949 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2170 |
| MscI | TGGCCA | 2 cut(s) | 860, 1150 |
| MseI | TTAA | 7 cut(s) | 36, 320, 870, 1881, 2100, 2232, 2601 |
| MslI | CAYNNNNRTG | 4 cut(s) | 273, 540, 888, 1195 |
| Msp20I | TGGCCA | 2 cut(s) | 860, 1150 |
| MspA1I | CMGCKG | 6 cut(s) | 464, 679, 788, 1334, 1519, 1588 |
| MspI | CCGG | 4 cut(s) | 30, 639, 1950, 2485 |
| MspR9I | CCNGG | 7 cut(s) | 31, 857, 1247, 1267, 2040, 2060, 2486 |
| MunI | CAATTG | 1 cut(s) | 1985 |
| Mva1269I | GAATGC | 2 cut(s) | 909, 1189 |
| MvaI | CCWGG | 5 cut(s) | 857, 1247, 1267, 2040, 2060 |
| MvnI | CGCG | 1 cut(s) | 101 |
| NciI | CCSGG | 2 cut(s) | 31, 2486 |
| NcoI | CCATGG | 1 cut(s) | 1145 |
| NdeII | GATC | 8 cut(s) | 529, 1219, 1558, 1892, 1981, 2071, 2446, 2456 |
| NlaIV | GGNNCC | 6 cut(s) | 105, 1202, 1894, 2350, 2448, 2716 |
| NmuCI | GTSAC | 5 cut(s) | 158, 259, 2361, 2510, 2654 |
| NsbI | TGCGCA | 1 cut(s) | 2402 |
| NsiI | ATGCAT | 2 cut(s) | 270, 756 |
| NspI | RCATGY | 4 cut(s) | 95, 272, 754, 2422 |
| NspV | TTCGAA | 1 cut(s) | 694 |
| OliI | CACNNNNGTG | 1 cut(s) | 1195 |
| PaeI | GCATGC | 3 cut(s) | 95, 272, 754 |
| PagI | TCATGA | 1 cut(s) | 535 |
| PceI | AGGCCT | 1 cut(s) | 2598 |
| PciSI | GCTCTTC | 1 cut(s) | 691 |
| PctI | GAATGC | 2 cut(s) | 909, 1189 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2170 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2039 |
| PleI | GAGTC | 1 cut(s) | 1962 |
| PmaCI | CACGTG | 1 cut(s) | 890 |
| PmlI | CACGTG | 1 cut(s) | 890 |
| PpsI | GAGTC | 1 cut(s) | 1962 |
| Ppu21I | YACGTR | 2 cut(s) | 890, 2665 |
| PpuMI | RGGWCCY | 1 cut(s) | 2349 |
| PsiI | TTATAA | 1 cut(s) | 819 |
| Psp124BI | GAGCTC | 2 cut(s) | 2019, 2412 |
| Psp1406I | AACGTT | 1 cut(s) | 2541 |
| Psp5II | RGGWCCY | 1 cut(s) | 2349 |
| Psp6I | CCWGG | 5 cut(s) | 855, 1245, 1265, 2038, 2058 |
| PspCI | CACGTG | 1 cut(s) | 890 |
| PspFI | CCCAGC | 5 cut(s) | 364, 374, 505, 1032, 2710 |
| PspGI | CCWGG | 5 cut(s) | 855, 1245, 1265, 2038, 2058 |
| PspN4I | GGNNCC | 6 cut(s) | 105, 1202, 1894, 2350, 2448, 2716 |
| PspPI | GGNCC | 3 cut(s) | 104, 2299, 2349 |
| PspPPI | RGGWCCY | 1 cut(s) | 2349 |
| PstI | CTGCAG | 3 cut(s) | 361, 778, 1051 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1337, 1588, 2652 |
| PsuI | RGATCY | 4 cut(s) | 529, 1219, 1892, 2446 |
| PvuII | CAGCTG | 6 cut(s) | 464, 679, 788, 1334, 1519, 1588 |
| RsaI | GTAC | 3 cut(s) | 961, 1112, 2051 |
| RsaNI | GTAC | 3 cut(s) | 960, 1111, 2050 |
| RseI | CAYNNNNRTG | 4 cut(s) | 273, 540, 888, 1195 |
| SacI | GAGCTC | 2 cut(s) | 2019, 2412 |
| SapI | GCTCTTC | 1 cut(s) | 691 |
| SaqAI | TTAA | 7 cut(s) | 36, 320, 870, 1881, 2100, 2232, 2601 |
| Sau3AI | GATC | 8 cut(s) | 529, 1219, 1558, 1892, 1981, 2071, 2446, 2456 |
| Sau96I | GGNCC | 3 cut(s) | 104, 2299, 2349 |
| ScaI | AGTACT | 1 cut(s) | 2051 |
| SchI | GAGTC | 1 cut(s) | 1962 |
| ScrFI | CCNGG | 7 cut(s) | 31, 857, 1247, 1267, 2040, 2060, 2486 |
| SduI | GDGCHC | 3 cut(s) | 2019, 2412, 2717 |
| SfcI | CTRYAG | 4 cut(s) | 357, 774, 1047, 2126 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 2433 |
| SfuI | TTCGAA | 1 cut(s) | 694 |
| SinI | GGWCC | 2 cut(s) | 2299, 2349 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 273, 540, 888, 1195 |
| SmlI | CTYRAG | 1 cut(s) | 2689 |
| SmoI | CTYRAG | 1 cut(s) | 2689 |
| SnaBI | TACGTA | 1 cut(s) | 2665 |
| SphI | GCATGC | 3 cut(s) | 95, 272, 754 |
| SseBI | AGGCCT | 1 cut(s) | 2598 |
| SsiI | CCGC | 9 cut(s) | 101, 152, 326, 414, 454, 710, 907, 1091, 2567 |
| SspI | AATATT | 1 cut(s) | 2155 |
| SspMI | CTAG | 2 cut(s) | 426, 825 |
| SstI | GAGCTC | 2 cut(s) | 2019, 2412 |
| StuI | AGGCCT | 1 cut(s) | 2598 |
| StyD4I | CCNGG | 7 cut(s) | 29, 855, 1245, 1265, 2038, 2058, 2484 |
| StyI | CCWWGG | 5 cut(s) | 1145, 1204, 1926, 2506, 2519 |
| TaaI | ACNGT | 4 cut(s) | 164, 718, 1383, 2001 |
| TaiI | ACGT | 4 cut(s) | 892, 1540, 2544, 2667 |
| TaqI | TCGA | 4 cut(s) | 568, 694, 1292, 2320 |
| TatI | WGTACW | 1 cut(s) | 2049 |
| Tru1I | TTAA | 7 cut(s) | 36, 320, 870, 1881, 2100, 2232, 2601 |
| Tru9I | TTAA | 7 cut(s) | 36, 320, 870, 1881, 2100, 2232, 2601 |
| TscAI | CASTG | 9 cut(s) | 169, 982, 1051, 1197, 1365, 1792, 2026, 2370, 2410 |
| TseFI | GTSAC | 5 cut(s) | 158, 259, 2361, 2510, 2654 |
| Tsp45I | GTSAC | 5 cut(s) | 158, 259, 2361, 2510, 2654 |
| TspRI | CASTG | 9 cut(s) | 169, 982, 1051, 1197, 1365, 1792, 2026, 2370, 2410 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2039 |
| VpaK11BI | GGWCC | 2 cut(s) | 2299, 2349 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 54, 2356 |
| XapI | RAATTY | 6 cut(s) | 76, 223, 551, 842, 1003, 2378 |
| XceI | RCATGY | 4 cut(s) | 95, 272, 754, 2422 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1211 |
| XmiI | GTMKAC | 3 cut(s) | 144, 345, 1303 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2170 |
| XspI | CTAG | 2 cut(s) | 426, 825 |
| ZrmI | AGTACT | 1 cut(s) | 2051 |
| Zsp2I | ATGCAT | 2 cut(s) | 270, 756 |