Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 801, 1152 |
| AarI | CACCTGC | 1 cut(s) | 1551 |
| Acc36I | ACCTGC | 4 cut(s) | 115, 1416, 1551, 1812 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1327 |
| AccI | GTMKAC | 3 cut(s) | 103, 1362, 2253 |
| AccII | CGCG | 1 cut(s) | 552 |
| AciI | CCGC | 2 cut(s) | 552, 1123 |
| AclWI | GGATC | 4 cut(s) | 519, 1588, 2015, 2635 |
| AcoI | YGGCCR | 6 cut(s) | 553, 840, 1124, 1130, 1850, 2438 |
| AcsI | RAATTY | 6 cut(s) | 61, 533, 1183, 1503, 2239, 2599 |
| AcuI | CTGAAG | 3 cut(s) | 1328, 2180, 2546 |
| AdeI | CACNNNGTG | 1 cut(s) | 244 |
| AfaI | GTAC | 3 cut(s) | 412, 848, 1319 |
| AflII | CTTAAG | 1 cut(s) | 1118 |
| AflIII | ACRYGT | 1 cut(s) | 1314 |
| AhlI | ACTAGT | 1 cut(s) | 407 |
| AjnI | CCWGG | 6 cut(s) | 837, 1135, 1277, 1914, 1981, 2435 |
| AleI | CACNNNNGTG | 1 cut(s) | 1195 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 615, 647 |
| Alw21I | GWGCWC | 2 cut(s) | 1997, 2126 |
| Alw26I | GTCTC | 5 cut(s) | 260, 618, 1212, 1470, 2205 |
| AlwI | GGATC | 4 cut(s) | 519, 1588, 2015, 2635 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2135 |
| Ama87I | CYCGRG | 2 cut(s) | 2423, 2633 |
| ApoI | RAATTY | 6 cut(s) | 61, 533, 1183, 1503, 2239, 2599 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 531, 563 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1503, 1878 |
| AspLEI | GCGC | 1 cut(s) | 493 |
| AspS9I | GGNCC | 5 cut(s) | 89, 1931, 2215, 2265, 2362 |
| AsuC2I | CCSGG | 2 cut(s) | 440, 1663 |
| AsuHPI | GGTGA | 7 cut(s) | 194, 781, 1595, 1659, 1678, 1683, 2472 |
| AsuII | TTCGAA | 1 cut(s) | 1721 |
| AsuNHI | GCTAGC | 1 cut(s) | 812 |
| AvaI | CYCGRG | 2 cut(s) | 2423, 2633 |
| AvaII | GGWCC | 4 cut(s) | 89, 1931, 2265, 2362 |
| AxyI | CCTNAGG | 1 cut(s) | 1112 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 394, 427 |
| BalI | TGGCCA | 3 cut(s) | 842, 1132, 1852 |
| Bbv12I | GWGCWC | 2 cut(s) | 1997, 2126 |
| BccI | CCATC | 9 cut(s) | 320, 826, 1105, 1447, 1678, 1861, 1955, 2040, 2342 |
| BceAI | ACGGC | 1 cut(s) | 105 |
| BciT130I | CCWGG | 6 cut(s) | 839, 1137, 1279, 1916, 1983, 2437 |
| BciVI | GTATCC | 2 cut(s) | 683, 1104 |
| BclI | TGATCA | 1 cut(s) | 1600 |
| BcnI | CCSGG | 2 cut(s) | 440, 1663 |
| BcoDI | GTCTC | 5 cut(s) | 260, 618, 1212, 1470, 2205 |
| BcuI | ACTAGT | 1 cut(s) | 407 |
| BfaI | CTAG | 5 cut(s) | 408, 813, 965, 1818, 2516 |
| BfmI | CTRYAG | 4 cut(s) | 756, 1394, 1544, 2127 |
| BfrI | CTTAAG | 1 cut(s) | 1118 |
| BfuAI | ACCTGC | 4 cut(s) | 115, 1416, 1551, 1812 |
| BfuI | GTATCC | 2 cut(s) | 683, 1104 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 565, 2349 |
| Bme1390I | CCNGG | 8 cut(s) | 440, 839, 1137, 1279, 1663, 1916, 1983, 2437 |
| Bme18I | GGWCC | 4 cut(s) | 89, 1931, 2265, 2362 |
| BmeT110I | CYCGRG | 2 cut(s) | 2423, 2633 |
| BmgT120I | GGNCC | 5 cut(s) | 89, 1931, 2215, 2265, 2362 |
| BmiI | GGNNCC | 4 cut(s) | 943, 1932, 2266, 2364 |
| BmrFI | CCNGG | 8 cut(s) | 440, 839, 1137, 1279, 1663, 1916, 1983, 2437 |
| BmsI | GCATC | 8 cut(s) | 240, 577, 693, 958, 1260, 1276, 1558, 2475 |
| BmtI | GCTAGC | 1 cut(s) | 816 |
| BpmI | CTGGAG | 6 cut(s) | 642, 1236, 1405, 1911, 2187, 2536 |
| Bpu14I | TTCGAA | 1 cut(s) | 1721 |
| BpuEI | CTTGAG | 3 cut(s) | 123, 1780, 2578 |
| BpuMI | CCSGG | 2 cut(s) | 440, 1663 |
| BsaI | GGTCTC | 1 cut(s) | 1212 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 615, 645, 1738, 1768 |
| Bse118I | RCCGGY | 2 cut(s) | 86, 2583 |
| Bse1I | ACTGG | 5 cut(s) | 399, 618, 955, 1219, 1231 |
| Bse21I | CCTNAGG | 1 cut(s) | 1112 |
| BseBI | CCWGG | 6 cut(s) | 839, 1137, 1279, 1916, 1983, 2437 |
| BseGI | GGATG | 5 cut(s) | 331, 903, 1275, 1795, 2434 |
| BseMII | CTCAG | 1 cut(s) | 1535 |
| BseNI | ACTGG | 5 cut(s) | 399, 618, 955, 1219, 1231 |
| BseRI | GAGGAG | 2 cut(s) | 1221, 2411 |
| BseYI | CCCAGC | 2 cut(s) | 1014, 1031 |
| BsgI | GTGCAG | 1 cut(s) | 2513 |
| Bsh1236I | CGCG | 1 cut(s) | 552 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1997, 2126 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2423, 2633 |
| BsiSI | CCGG | 7 cut(s) | 87, 439, 676, 1663, 2153, 2441, 2584 |
| BslFI | GGGAC | 6 cut(s) | 756, 1031, 1039, 1372, 1944, 2519 |
| BsmAI | GTCTC | 5 cut(s) | 260, 618, 1212, 1470, 2205 |
| BsmFI | GGGAC | 6 cut(s) | 756, 1031, 1039, 1372, 1944, 2519 |
| Bso31I | GGTCTC | 1 cut(s) | 1212 |
| BsoBI | CYCGRG | 2 cut(s) | 2423, 2633 |
| Bsp119I | TTCGAA | 1 cut(s) | 1721 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1997, 2126 |
| Bsp143I | GATC | 7 cut(s) | 511, 1593, 1600, 2020, 2372, 2398, 2627 |
| Bsp19I | CCATGG | 2 cut(s) | 1127, 1265 |
| BspACI | CCGC | 2 cut(s) | 552, 1123 |
| BspCNI | CTCAG | 1 cut(s) | 1534 |
| BspFNI | CGCG | 1 cut(s) | 552 |
| BspLI | GGNNCC | 4 cut(s) | 943, 1932, 2266, 2364 |
| BspMAI | CTGCAG | 3 cut(s) | 760, 1398, 1548 |
| BspMI | ACCTGC | 4 cut(s) | 115, 1416, 1551, 1812 |
| BspOI | GCTAGC | 1 cut(s) | 816 |
| BspPI | GGATC | 4 cut(s) | 519, 1588, 2015, 2635 |
| BspT104I | TTCGAA | 1 cut(s) | 1721 |
| BspTI | CTTAAG | 1 cut(s) | 1118 |
| BspTNI | GGTCTC | 1 cut(s) | 1212 |
| BsrFI | RCCGGY | 2 cut(s) | 86, 2583 |
| BsrI | ACTGG | 5 cut(s) | 399, 618, 955, 1219, 1231 |
| BssAI | RCCGGY | 2 cut(s) | 86, 2583 |
| BssMI | GATC | 7 cut(s) | 511, 1593, 1600, 2020, 2372, 2398, 2627 |
| BssT1I | CCWWGG | 5 cut(s) | 667, 806, 1127, 1265, 1489 |
| Bst2UI | CCWGG | 6 cut(s) | 839, 1137, 1279, 1916, 1983, 2437 |
| Bst4CI | ACNGT | 5 cut(s) | 149, 419, 700, 1223, 1836 |
| Bst6I | CTCTTC | 3 cut(s) | 16, 1633, 1884 |
| BstAFI | CTTAAG | 1 cut(s) | 1118 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 764, 1555 |
| BstBI | TTCGAA | 1 cut(s) | 1721 |
| BstDEI | CTNAG | 4 cut(s) | 1112, 1521, 1857, 2063 |
| BstDSI | CCRYGG | 4 cut(s) | 415, 1127, 1222, 1265 |
| BstEII | GGTNACC | 1 cut(s) | 1665 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2272 |
| BstF5I | GGATG | 5 cut(s) | 331, 903, 1275, 1795, 2434 |
| BstFNI | CGCG | 1 cut(s) | 552 |
| BstHHI | GCGC | 1 cut(s) | 493 |
| BstKTI | GATC | 7 cut(s) | 514, 1596, 1603, 2023, 2375, 2401, 2630 |
| BstMAI | GTCTC | 5 cut(s) | 260, 618, 1212, 1470, 2205 |
| BstMBI | GATC | 7 cut(s) | 511, 1593, 1600, 2020, 2372, 2398, 2627 |
| BstNI | CCWGG | 6 cut(s) | 839, 1137, 1279, 1916, 1983, 2437 |
| BstNSI | RCATGY | 5 cut(s) | 80, 257, 736, 889, 1318 |
| BstPI | GGTNACC | 1 cut(s) | 1665 |
| BstSCI | CCNGG | 8 cut(s) | 438, 837, 1135, 1277, 1661, 1914, 1981, 2435 |
| BstSFI | CTRYAG | 4 cut(s) | 756, 1394, 1544, 2127 |
| BstUI | CGCG | 1 cut(s) | 552 |
| BstX2I | RGATCY | 2 cut(s) | 511, 1593 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1197, 2234 |
| BstYI | RGATCY | 2 cut(s) | 511, 1593 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1112 |
| BsuI | GTATCC | 2 cut(s) | 683, 1104 |
| BtgI | CCRYGG | 4 cut(s) | 415, 1127, 1222, 1265 |
| BtsCI | GGATG | 5 cut(s) | 331, 903, 1275, 1795, 2434 |
| BtsIMutI | CAGTG | 2 cut(s) | 154, 406 |
| BveI | ACCTGC | 4 cut(s) | 115, 1416, 1551, 1812 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2135 |
| CfoI | GCGC | 1 cut(s) | 493 |
| Cfr10I | RCCGGY | 2 cut(s) | 86, 2583 |
| Cfr13I | GGNCC | 5 cut(s) | 89, 1931, 2215, 2265, 2362 |
| CseI | GACGC | 1 cut(s) | 939 |
| Csp6I | GTAC | 3 cut(s) | 411, 847, 1318 |
| CviQI | GTAC | 3 cut(s) | 411, 847, 1318 |
| DdeI | CTNAG | 4 cut(s) | 1112, 1521, 1857, 2063 |
| DpnI | GATC | 7 cut(s) | 513, 1595, 1602, 2022, 2374, 2400, 2629 |
| DpnII | GATC | 7 cut(s) | 511, 1593, 1600, 2020, 2372, 2398, 2627 |
| DraIII | CACNNNGTG | 1 cut(s) | 244 |
| EaeI | YGGCCR | 6 cut(s) | 553, 840, 1124, 1130, 1850, 2438 |
| Eam1104I | CTCTTC | 3 cut(s) | 16, 1633, 1884 |
| EarI | CTCTTC | 3 cut(s) | 16, 1633, 1884 |
| Eco130I | CCWWGG | 5 cut(s) | 667, 806, 1127, 1265, 1489 |
| Eco147I | AGGCCT | 1 cut(s) | 2514 |
| Eco31I | GGTCTC | 1 cut(s) | 1212 |
| Eco47I | GGWCC | 4 cut(s) | 89, 1931, 2265, 2362 |
| Eco57I | CTGAAG | 3 cut(s) | 1328, 2180, 2546 |
| Eco81I | CCTNAGG | 1 cut(s) | 1112 |
| Eco88I | CYCGRG | 2 cut(s) | 2423, 2633 |
| Eco91I | GGTNACC | 1 cut(s) | 1665 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2272 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1931, 2265, 2362 |
| EcoO65I | GGTNACC | 1 cut(s) | 1665 |
| EcoRI | GAATTC | 2 cut(s) | 61, 1183 |
| EcoRII | CCWGG | 6 cut(s) | 837, 1135, 1277, 1914, 1981, 2435 |
| EcoT14I | CCWWGG | 5 cut(s) | 667, 806, 1127, 1265, 1489 |
| EcoT22I | ATGCAT | 1 cut(s) | 255 |
| ErhI | CCWWGG | 5 cut(s) | 667, 806, 1127, 1265, 1489 |
| FaqI | GGGAC | 6 cut(s) | 756, 1031, 1039, 1372, 1944, 2519 |
| FbaI | TGATCA | 1 cut(s) | 1600 |
| FblI | GTMKAC | 3 cut(s) | 103, 1362, 2253 |
| FokI | GGATG | 5 cut(s) | 338, 910, 1282, 1802, 2441 |
| FspBI | CTAG | 5 cut(s) | 408, 813, 965, 1818, 2516 |
| GlaI | GCGC | 1 cut(s) | 492 |
| GsaI | CCCAGC | 2 cut(s) | 1018, 1035 |
| GsuI | CTGGAG | 6 cut(s) | 642, 1236, 1405, 1911, 2187, 2536 |
| HapII | CCGG | 7 cut(s) | 87, 439, 676, 1663, 2153, 2441, 2584 |
| HgaI | GACGC | 1 cut(s) | 939 |
| HhaI | GCGC | 1 cut(s) | 493 |
| Hin6I | GCGC | 1 cut(s) | 491 |
| HinP1I | GCGC | 1 cut(s) | 491 |
| HincII | GTYRAC | 1 cut(s) | 233 |
| HindII | GTYRAC | 1 cut(s) | 233 |
| HindIII | AAGCTT | 1 cut(s) | 208 |
| HpaII | CCGG | 7 cut(s) | 87, 439, 676, 1663, 2153, 2441, 2584 |
| HphI | GGTGA | 7 cut(s) | 194, 781, 1595, 1659, 1678, 1683, 2472 |
| Hpy166II | GTNNAC | 5 cut(s) | 104, 152, 233, 1363, 2254 |
| Hpy188I | TCNGA | 5 cut(s) | 67, 823, 929, 1524, 2526 |
| Hpy188III | TCNNGA | 7 cut(s) | 643, 1346, 1715, 1890, 2204, 2402, 2595 |
| Hpy8I | GTNNAC | 5 cut(s) | 104, 152, 233, 1363, 2254 |
| Hpy99I | CGWCG | 1 cut(s) | 933 |
| HpyCH4III | ACNGT | 5 cut(s) | 149, 419, 700, 1223, 1836 |
| HpyCH4IV | ACGT | 3 cut(s) | 1385, 1812, 2211 |
| HpyF3I | CTNAG | 4 cut(s) | 1112, 1521, 1857, 2063 |
| HpySE526I | ACGT | 3 cut(s) | 1385, 1812, 2211 |
| HspAI | GCGC | 1 cut(s) | 491 |
| KroI | GCCGGC | 1 cut(s) | 2583 |
| KroNI | GCCGGC | 1 cut(s) | 2585 |
| Ksp22I | TGATCA | 1 cut(s) | 1600 |
| Kzo9I | GATC | 7 cut(s) | 511, 1593, 1600, 2020, 2372, 2398, 2627 |
| LmnI | GCTCC | 1 cut(s) | 2323 |
| LweI | GCATC | 8 cut(s) | 240, 577, 693, 958, 1260, 1276, 1558, 2475 |
| MaeI | CTAG | 5 cut(s) | 408, 813, 965, 1818, 2516 |
| MaeII | ACGT | 3 cut(s) | 1385, 1812, 2211 |
| MaeIII | GTNAC | 8 cut(s) | 143, 157, 244, 401, 959, 1258, 1665, 2158 |
| MalI | GATC | 7 cut(s) | 513, 1595, 1602, 2022, 2374, 2400, 2629 |
| MboI | GATC | 7 cut(s) | 511, 1593, 1600, 2020, 2372, 2398, 2627 |
| MboII | GAAGA | 9 cut(s) | 3, 1092, 1178, 1511, 1620, 1788, 1833, 1871, 2408 |
| MfeI | CAATTG | 3 cut(s) | 1553, 1869, 1925 |
| MflI | RGATCY | 2 cut(s) | 511, 1593 |
| MhlI | GDGCHC | 2 cut(s) | 1997, 2126 |
| MlsI | TGGCCA | 3 cut(s) | 842, 1132, 1852 |
| MluNI | TGGCCA | 3 cut(s) | 842, 1132, 1852 |
| MlyI | GAGTC | 4 cut(s) | 620, 1472, 1519, 2585 |
| MmeI | TCCRAC | 4 cut(s) | 952, 1553, 1824, 2337 |
| Mox20I | TGGCCA | 3 cut(s) | 842, 1132, 1852 |
| Mph1103I | ATGCAT | 1 cut(s) | 255 |
| MroNI | GCCGGC | 1 cut(s) | 2583 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1503, 1878 |
| MscI | TGGCCA | 3 cut(s) | 842, 1132, 1852 |
| MseI | TTAA | 6 cut(s) | 500, 852, 1076, 1119, 1439, 2247 |
| MslI | CAYNNNNRTG | 5 cut(s) | 81, 179, 258, 522, 1195 |
| Msp20I | TGGCCA | 3 cut(s) | 842, 1132, 1852 |
| MspA1I | CMGCKG | 1 cut(s) | 1031 |
| MspCI | CTTAAG | 1 cut(s) | 1118 |
| MspI | CCGG | 7 cut(s) | 87, 439, 676, 1663, 2153, 2441, 2584 |
| MspR9I | CCNGG | 8 cut(s) | 440, 839, 1137, 1279, 1663, 1916, 1983, 2437 |
| MunI | CAATTG | 3 cut(s) | 1553, 1869, 1925 |
| MvaI | CCWGG | 6 cut(s) | 839, 1137, 1279, 1916, 1983, 2437 |
| MvnI | CGCG | 1 cut(s) | 552 |
| NaeI | GCCGGC | 1 cut(s) | 2585 |
| NciI | CCSGG | 2 cut(s) | 440, 1663 |
| NcoI | CCATGG | 2 cut(s) | 1127, 1265 |
| NdeII | GATC | 7 cut(s) | 511, 1593, 1600, 2020, 2372, 2398, 2627 |
| NgoMIV | GCCGGC | 1 cut(s) | 2583 |
| NheI | GCTAGC | 1 cut(s) | 812 |
| NlaIV | GGNNCC | 4 cut(s) | 943, 1932, 2266, 2364 |
| NmuCI | GTSAC | 6 cut(s) | 143, 244, 401, 959, 1258, 1665 |
| NsiI | ATGCAT | 1 cut(s) | 255 |
| NspI | RCATGY | 5 cut(s) | 80, 257, 736, 889, 1318 |
| NspV | TTCGAA | 1 cut(s) | 1721 |
| OliI | CACNNNNGTG | 1 cut(s) | 1195 |
| PaeI | GCATGC | 4 cut(s) | 80, 257, 736, 889 |
| PaeR7I | CTCGAG | 1 cut(s) | 2633 |
| PaqCI | CACCTGC | 1 cut(s) | 1551 |
| PceI | AGGCCT | 1 cut(s) | 2514 |
| PciI | ACATGT | 1 cut(s) | 1314 |
| PdiI | GCCGGC | 1 cut(s) | 2585 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1503, 1878 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1327 |
| PleI | GAGTC | 4 cut(s) | 620, 1471, 1519, 2585 |
| PpsI | GAGTC | 4 cut(s) | 620, 1471, 1519, 2585 |
| PpuMI | RGGWCCY | 3 cut(s) | 1931, 2265, 2362 |
| PscI | ACATGT | 1 cut(s) | 1314 |
| PsiI | TTATAA | 2 cut(s) | 801, 1152 |
| Psp5II | RGGWCCY | 3 cut(s) | 1931, 2265, 2362 |
| Psp6I | CCWGG | 6 cut(s) | 837, 1135, 1277, 1914, 1981, 2435 |
| PspEI | GGTNACC | 1 cut(s) | 1665 |
| PspFI | CCCAGC | 2 cut(s) | 1014, 1031 |
| PspGI | CCWGG | 6 cut(s) | 837, 1135, 1277, 1914, 1981, 2435 |
| PspN4I | GGNNCC | 4 cut(s) | 943, 1932, 2266, 2364 |
| PspPI | GGNCC | 5 cut(s) | 89, 1931, 2215, 2265, 2362 |
| PspPPI | RGGWCCY | 3 cut(s) | 1931, 2265, 2362 |
| PspXI | VCTCGAGB | 1 cut(s) | 2633 |
| PstI | CTGCAG | 3 cut(s) | 760, 1398, 1548 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2135 |
| PsuI | RGATCY | 2 cut(s) | 511, 1593 |
| PvuII | CAGCTG | 1 cut(s) | 1031 |
| RsaI | GTAC | 3 cut(s) | 412, 848, 1319 |
| RsaNI | GTAC | 3 cut(s) | 411, 847, 1318 |
| RseI | CAYNNNNRTG | 5 cut(s) | 81, 179, 258, 522, 1195 |
| SaqAI | TTAA | 6 cut(s) | 500, 852, 1076, 1119, 1439, 2247 |
| Sau3AI | GATC | 7 cut(s) | 511, 1593, 1600, 2020, 2372, 2398, 2627 |
| Sau96I | GGNCC | 5 cut(s) | 89, 1931, 2215, 2265, 2362 |
| SchI | GAGTC | 4 cut(s) | 620, 1472, 1519, 2585 |
| ScrFI | CCNGG | 8 cut(s) | 440, 839, 1137, 1279, 1663, 1916, 1983, 2437 |
| SduI | GDGCHC | 2 cut(s) | 1997, 2126 |
| SfaNI | GCATC | 8 cut(s) | 240, 577, 693, 958, 1260, 1276, 1558, 2475 |
| SfcI | CTRYAG | 4 cut(s) | 756, 1394, 1544, 2127 |
| Sfr274I | CTCGAG | 1 cut(s) | 2633 |
| SfuI | TTCGAA | 1 cut(s) | 1721 |
| SinI | GGWCC | 4 cut(s) | 89, 1931, 2265, 2362 |
| SlaI | CTCGAG | 1 cut(s) | 2633 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 81, 179, 258, 522, 1195 |
| SmlI | CTYRAG | 5 cut(s) | 138, 1118, 1759, 2593, 2633 |
| SmoI | CTYRAG | 5 cut(s) | 138, 1118, 1759, 2593, 2633 |
| SpeI | ACTAGT | 1 cut(s) | 407 |
| SphI | GCATGC | 4 cut(s) | 80, 257, 736, 889 |
| SseBI | AGGCCT | 1 cut(s) | 2514 |
| SsiI | CCGC | 2 cut(s) | 552, 1123 |
| SspMI | CTAG | 5 cut(s) | 408, 813, 965, 1818, 2516 |
| StuI | AGGCCT | 1 cut(s) | 2514 |
| StyD4I | CCNGG | 8 cut(s) | 438, 837, 1135, 1277, 1661, 1914, 1981, 2435 |
| StyI | CCWWGG | 5 cut(s) | 667, 806, 1127, 1265, 1489 |
| TaaI | ACNGT | 5 cut(s) | 149, 419, 700, 1223, 1836 |
| TaiI | ACGT | 3 cut(s) | 1388, 1815, 2214 |
| TaqI | TCGA | 4 cut(s) | 1204, 1721, 2401, 2634 |
| TatI | WGTACW | 1 cut(s) | 846 |
| TauI | GCSGC | 2 cut(s) | 555, 1126 |
| Tru1I | TTAA | 6 cut(s) | 500, 852, 1076, 1119, 1439, 2247 |
| Tru9I | TTAA | 6 cut(s) | 500, 852, 1076, 1119, 1439, 2247 |
| TscAI | CASTG | 2 cut(s) | 154, 406 |
| TseFI | GTSAC | 6 cut(s) | 143, 244, 401, 959, 1258, 1665 |
| Tsp45I | GTSAC | 6 cut(s) | 143, 244, 401, 959, 1258, 1665 |
| TspRI | CASTG | 2 cut(s) | 154, 406 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1327 |
| Vha464I | CTTAAG | 1 cut(s) | 1118 |
| VpaK11BI | GGWCC | 4 cut(s) | 89, 1931, 2265, 2362 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2272 |
| XapI | RAATTY | 6 cut(s) | 61, 533, 1183, 1503, 2239, 2599 |
| XceI | RCATGY | 5 cut(s) | 80, 257, 736, 889, 1318 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 178, 2039 |
| XhoI | CTCGAG | 1 cut(s) | 2633 |
| XmiI | GTMKAC | 3 cut(s) | 103, 1362, 2253 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1503, 1878 |
| XspI | CTAG | 5 cut(s) | 408, 813, 965, 1818, 2516 |
| Zsp2I | ATGCAT | 1 cut(s) | 255 |