Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 816 |
| AarI | CACCTGC | 1 cut(s) | 2729 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 931 |
| Acc16I | TGCGCA | 1 cut(s) | 2471 |
| Acc36I | ACCTGC | 3 cut(s) | 157, 1304, 2729 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1342, 2105, 2765 |
| AccI | GTMKAC | 5 cut(s) | 141, 342, 1318, 1332, 2740 |
| AciI | CCGC | 8 cut(s) | 230, 323, 356, 451, 799, 1350, 1733, 2121 |
| AclWI | GGATC | 7 cut(s) | 534, 1735, 1841, 1944, 1957, 2135, 2791 |
| AcoI | YGGCCR | 3 cut(s) | 855, 995, 1145 |
| AcsI | RAATTY | 7 cut(s) | 73, 548, 839, 1000, 1857, 2447, 2597 |
| AcuI | CTGAAG | 2 cut(s) | 1481, 2343 |
| AdeI | CACNNNGTG | 1 cut(s) | 256 |
| AfaI | GTAC | 3 cut(s) | 958, 2034, 2137 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 125, 508, 1047, 1342, 2105, 2427, 2593, 2765 |
| AflII | CTTAAG | 1 cut(s) | 1942 |
| AjnI | CCWGG | 4 cut(s) | 852, 1236, 1260, 2104 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1713, 1745 |
| AleI | CACNNNNGTG | 1 cut(s) | 1210 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 429, 461 |
| Alw21I | GWGCWC | 2 cut(s) | 2085, 2481 |
| Alw26I | GTCTC | 8 cut(s) | 30, 117, 272, 917, 1178, 1227, 1407, 1485 |
| AlwI | GGATC | 7 cut(s) | 534, 1735, 1841, 1944, 1957, 2135, 2791 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1352 |
| Ama87I | CYCGRG | 1 cut(s) | 885 |
| AoxI | GGCC | 8 cut(s) | 101, 154, 568, 855, 995, 1145, 2494, 2665 |
| ApoI | RAATTY | 7 cut(s) | 73, 548, 839, 1000, 1857, 2447, 2597 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 546, 578, 1739, 1771 |
| AseI | ATTAAT | 1 cut(s) | 1197 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1198, 2242 |
| AspLEI | GCGC | 2 cut(s) | 1014, 2472 |
| AspS9I | GGNCC | 6 cut(s) | 101, 154, 646, 2371, 2418, 2515 |
| AsuC2I | CCSGG | 2 cut(s) | 30, 100 |
| AsuHPI | GGTGA | 5 cut(s) | 650, 1196, 2009, 2179, 2591 |
| AvaI | CYCGRG | 1 cut(s) | 885 |
| AvaII | GGWCC | 4 cut(s) | 646, 2371, 2418, 2515 |
| AxyI | CCTNAGG | 1 cut(s) | 48 |
| BalI | TGGCCA | 3 cut(s) | 857, 997, 1147 |
| BamHI | GGATCC | 1 cut(s) | 1949 |
| BanII | GRGCYC | 3 cut(s) | 1230, 2085, 2481 |
| BbsI | GAAGAC | 3 cut(s) | 6, 752, 2349 |
| Bbv12I | GWGCWC | 2 cut(s) | 2085, 2481 |
| BccI | CCATC | 8 cut(s) | 594, 841, 1120, 1156, 1175, 1716, 1820, 1913 |
| BceAI | ACGGC | 2 cut(s) | 438, 2242 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 152, 186, 2461, 2495, 2714, 2748 |
| BciT130I | CCWGG | 4 cut(s) | 854, 1238, 1262, 2106 |
| BciVI | GTATCC | 1 cut(s) | 1119 |
| BclI | TGATCA | 1 cut(s) | 1576 |
| BcnI | CCSGG | 2 cut(s) | 30, 100 |
| BcoDI | GTCTC | 8 cut(s) | 30, 117, 272, 917, 1178, 1227, 1407, 1485 |
| BfaI | CTAG | 2 cut(s) | 423, 936 |
| BfmI | CTRYAG | 2 cut(s) | 771, 1570 |
| BfoI | RGCGCY | 1 cut(s) | 1015 |
| BfrI | CTTAAG | 1 cut(s) | 1942 |
| BfuAI | ACCTGC | 3 cut(s) | 157, 1304, 2729 |
| BfuI | GTATCC | 1 cut(s) | 1119 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 580 |
| Bme1390I | CCNGG | 6 cut(s) | 30, 100, 854, 1238, 1262, 2106 |
| Bme18I | GGWCC | 4 cut(s) | 646, 2371, 2418, 2515 |
| BmeT110I | CYCGRG | 1 cut(s) | 885 |
| BmgT120I | GGNCC | 6 cut(s) | 101, 154, 646, 2371, 2418, 2515 |
| BmiI | GGNNCC | 2 cut(s) | 1951, 2419 |
| BmrFI | CCNGG | 6 cut(s) | 30, 100, 854, 1238, 1262, 2106 |
| BmrI | ACTGGG | 2 cut(s) | 1786, 2036 |
| BmuI | ACTGGG | 2 cut(s) | 1786, 2036 |
| BpiI | GAAGAC | 3 cut(s) | 6, 752, 2349 |
| BpmI | CTGGAG | 2 cut(s) | 2037, 2531 |
| Bpu10I | CCTNAGC | 3 cut(s) | 507, 1527, 1533 |
| BpuEI | CTTGAG | 1 cut(s) | 2770 |
| BpuMI | CCSGG | 2 cut(s) | 30, 100 |
| BsaAI | YACGTR | 1 cut(s) | 2486 |
| BsaI | GGTCTC | 2 cut(s) | 1178, 1227 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 125, 508, 1047, 1342, 2105, 2427, 2593, 2765 |
| Bse1I | ACTGG | 8 cut(s) | 970, 1013, 1792, 1999, 2042, 2277, 2439, 2514 |
| Bse21I | CCTNAGG | 1 cut(s) | 48 |
| Bse3DI | GCAATG | 4 cut(s) | 1347, 2239, 2296, 2770 |
| BseBI | CCWGG | 4 cut(s) | 854, 1238, 1262, 2106 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 125, 508, 1047, 1342, 2105, 2427, 2593, 2765 |
| BseMI | GCAATG | 4 cut(s) | 1347, 2239, 2296, 2770 |
| BseNI | ACTGG | 8 cut(s) | 970, 1013, 1792, 1999, 2042, 2277, 2439, 2514 |
| BseRI | GAGGAG | 1 cut(s) | 71 |
| BseYI | CCCAGC | 2 cut(s) | 1029, 1046 |
| BsgI | GTGCAG | 3 cut(s) | 477, 1338, 1700 |
| BshFI | GGCC | 8 cut(s) | 103, 156, 570, 857, 997, 1147, 2496, 2667 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2085, 2481 |
| BsiHKCI | CYCGRG | 1 cut(s) | 885 |
| BsiSI | CCGG | 2 cut(s) | 29, 99 |
| BslFI | GGGAC | 3 cut(s) | 1142, 1865, 2236 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 125, 508, 1047, 1342, 2105, 2427, 2593, 2765 |
| BsmAI | GTCTC | 8 cut(s) | 30, 117, 272, 917, 1178, 1227, 1407, 1485 |
| BsmBI | CGTCTC | 2 cut(s) | 30, 272 |
| BsmFI | GGGAC | 3 cut(s) | 1142, 1865, 2236 |
| BsmI | GAATGC | 2 cut(s) | 1753, 2123 |
| BsnI | GGCC | 8 cut(s) | 103, 156, 570, 857, 997, 1147, 2496, 2667 |
| Bso31I | GGTCTC | 2 cut(s) | 1178, 1227 |
| BsoBI | CYCGRG | 1 cut(s) | 885 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1230, 2085, 2481 |
| Bsp143I | GATC | 9 cut(s) | 526, 1576, 1740, 1846, 1949, 1989, 2140, 2525, 2783 |
| Bsp19I | CCATGG | 1 cut(s) | 1142 |
| BspACI | CCGC | 8 cut(s) | 230, 323, 356, 451, 799, 1350, 1733, 2121 |
| BspANI | GGCC | 8 cut(s) | 103, 156, 570, 857, 997, 1147, 2496, 2667 |
| BspHI | TCATGA | 1 cut(s) | 532 |
| BspLI | GGNNCC | 2 cut(s) | 1951, 2419 |
| BspMAI | CTGCAG | 1 cut(s) | 775 |
| BspMI | ACCTGC | 3 cut(s) | 157, 1304, 2729 |
| BspPI | GGATC | 7 cut(s) | 534, 1735, 1841, 1944, 1957, 2135, 2791 |
| BspTI | CTTAAG | 1 cut(s) | 1942 |
| BspTNI | GGTCTC | 2 cut(s) | 1178, 1227 |
| BsrDI | GCAATG | 4 cut(s) | 1347, 2239, 2296, 2770 |
| BsrI | ACTGG | 8 cut(s) | 970, 1013, 1792, 1999, 2042, 2277, 2439, 2514 |
| BssMI | GATC | 9 cut(s) | 526, 1576, 1740, 1846, 1949, 1989, 2140, 2525, 2783 |
| BssNAI | GTATAC | 2 cut(s) | 343, 1333 |
| BssT1I | CCWWGG | 6 cut(s) | 1142, 1280, 1292, 2128, 2575, 2588 |
| Bst1107I | GTATAC | 2 cut(s) | 343, 1333 |
| Bst2UI | CCWGG | 4 cut(s) | 854, 1238, 1262, 2106 |
| Bst4CI | ACNGT | 8 cut(s) | 715, 1172, 1401, 1809, 2052, 2067, 2519, 2675 |
| Bst6I | CTCTTC | 5 cut(s) | 48, 126, 924, 1410, 1822 |
| BstAFI | CTTAAG | 1 cut(s) | 1942 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 779, 1352, 2721 |
| BstBAI | YACGTR | 1 cut(s) | 2486 |
| BstDSI | CCRYGG | 3 cut(s) | 1142, 1168, 2063 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2425 |
| BstH2I | RGCGCY | 1 cut(s) | 1015 |
| BstHHI | GCGC | 2 cut(s) | 1014, 2472 |
| BstKTI | GATC | 9 cut(s) | 529, 1579, 1743, 1849, 1952, 1992, 2143, 2528, 2786 |
| BstMAI | GTCTC | 8 cut(s) | 30, 117, 272, 917, 1178, 1227, 1407, 1485 |
| BstMBI | GATC | 9 cut(s) | 526, 1576, 1740, 1846, 1949, 1989, 2140, 2525, 2783 |
| BstNI | CCWGG | 4 cut(s) | 854, 1238, 1262, 2106 |
| BstNSI | RCATGY | 3 cut(s) | 92, 751, 904 |
| BstSCI | CCNGG | 6 cut(s) | 28, 98, 852, 1236, 1260, 2104 |
| BstSFI | CTRYAG | 2 cut(s) | 771, 1570 |
| BstV2I | GAAGAC | 3 cut(s) | 6, 752, 2349 |
| BstX2I | RGATCY | 3 cut(s) | 526, 1740, 1949 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1212, 1268 |
| BstYI | RGATCY | 3 cut(s) | 526, 1740, 1949 |
| BstZ17I | GTATAC | 2 cut(s) | 343, 1333 |
| Bsu36I | CCTNAGG | 1 cut(s) | 48 |
| BsuI | GTATCC | 1 cut(s) | 1119 |
| BsuRI | GGCC | 8 cut(s) | 103, 156, 570, 857, 997, 1147, 2496, 2667 |
| BtgI | CCRYGG | 3 cut(s) | 1142, 1168, 2063 |
| BtgZI | GCGATG | 1 cut(s) | 2739 |
| BtsI | GCAGTG | 3 cut(s) | 1041, 2085, 2479 |
| BveI | ACCTGC | 3 cut(s) | 157, 1304, 2729 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1352 |
| CciI | TCATGA | 1 cut(s) | 532 |
| CfoI | GCGC | 2 cut(s) | 1014, 2472 |
| Cfr13I | GGNCC | 6 cut(s) | 101, 154, 646, 2371, 2418, 2515 |
| CseI | GACGC | 1 cut(s) | 1293 |
| Csp6I | GTAC | 3 cut(s) | 957, 2033, 2136 |
| CviAII | CATG | 9 cut(s) | 89, 431, 533, 718, 748, 779, 901, 1143, 2191 |
| CviQI | GTAC | 3 cut(s) | 957, 2033, 2136 |
| DpnI | GATC | 9 cut(s) | 528, 1578, 1742, 1848, 1951, 1991, 2142, 2527, 2785 |
| DpnII | GATC | 9 cut(s) | 526, 1576, 1740, 1846, 1949, 1989, 2140, 2525, 2783 |
| DraIII | CACNNNGTG | 1 cut(s) | 256 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 931 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 931 |
| EaeI | YGGCCR | 3 cut(s) | 855, 995, 1145 |
| Eam1104I | CTCTTC | 5 cut(s) | 48, 126, 924, 1410, 1822 |
| EarI | CTCTTC | 5 cut(s) | 48, 126, 924, 1410, 1822 |
| Ecl136II | GAGCTC | 2 cut(s) | 2083, 2479 |
| Eco130I | CCWWGG | 6 cut(s) | 1142, 1280, 1292, 2128, 2575, 2588 |
| Eco147I | AGGCCT | 1 cut(s) | 2667 |
| Eco24I | GRGCYC | 3 cut(s) | 1230, 2085, 2481 |
| Eco31I | GGTCTC | 2 cut(s) | 1178, 1227 |
| Eco47I | GGWCC | 4 cut(s) | 646, 2371, 2418, 2515 |
| Eco53kI | GAGCTC | 2 cut(s) | 2083, 2479 |
| Eco57I | CTGAAG | 2 cut(s) | 1481, 2343 |
| Eco81I | CCTNAGG | 1 cut(s) | 48 |
| Eco88I | CYCGRG | 1 cut(s) | 885 |
| EcoICRI | GAGCTC | 2 cut(s) | 2083, 2479 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2425 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2418 |
| EcoRI | GAATTC | 2 cut(s) | 73, 1857 |
| EcoRII | CCWGG | 4 cut(s) | 852, 1236, 1260, 2104 |
| EcoT14I | CCWWGG | 6 cut(s) | 1142, 1280, 1292, 2128, 2575, 2588 |
| EcoT38I | GRGCYC | 3 cut(s) | 1230, 2085, 2481 |
| ErhI | CCWWGG | 6 cut(s) | 1142, 1280, 1292, 2128, 2575, 2588 |
| Esp3I | CGTCTC | 2 cut(s) | 30, 272 |
| FaeI | CATG | 9 cut(s) | 92, 434, 536, 721, 751, 782, 904, 1146, 2194 |
| FaqI | GGGAC | 3 cut(s) | 1142, 1865, 2236 |
| FatI | CATG | 9 cut(s) | 88, 430, 532, 717, 747, 778, 900, 1142, 2190 |
| FauI | CCCGC | 1 cut(s) | 458 |
| FbaI | TGATCA | 1 cut(s) | 1576 |
| FblI | GTMKAC | 5 cut(s) | 141, 342, 1318, 1332, 2740 |
| FriOI | GRGCYC | 3 cut(s) | 1230, 2085, 2481 |
| FspBI | CTAG | 2 cut(s) | 423, 936 |
| FspI | TGCGCA | 1 cut(s) | 2471 |
| GlaI | GCGC | 2 cut(s) | 1013, 2471 |
| GsaI | CCCAGC | 2 cut(s) | 1033, 1050 |
| GsuI | CTGGAG | 2 cut(s) | 2037, 2531 |
| HaeII | RGCGCY | 1 cut(s) | 1015 |
| HaeIII | GGCC | 8 cut(s) | 103, 156, 570, 857, 997, 1147, 2496, 2667 |
| HapII | CCGG | 2 cut(s) | 29, 99 |
| HgaI | GACGC | 1 cut(s) | 1293 |
| HhaI | GCGC | 2 cut(s) | 1014, 2472 |
| Hin1II | CATG | 9 cut(s) | 92, 434, 536, 721, 751, 782, 904, 1146, 2194 |
| Hin6I | GCGC | 2 cut(s) | 1012, 2470 |
| HinP1I | GCGC | 2 cut(s) | 1012, 2470 |
| HincII | GTYRAC | 3 cut(s) | 2507, 2551, 2741 |
| HindII | GTYRAC | 3 cut(s) | 2507, 2551, 2741 |
| HindIII | AAGCTT | 1 cut(s) | 2699 |
| HpaII | CCGG | 2 cut(s) | 29, 99 |
| HphI | GGTGA | 5 cut(s) | 650, 1196, 2009, 2179, 2591 |
| Hpy99I | CGWCG | 1 cut(s) | 948 |
| HpyAV | CCTTC | 6 cut(s) | 1015, 1423, 1878, 2395, 2495, 2657 |
| HpyCH4III | ACNGT | 8 cut(s) | 715, 1172, 1401, 1809, 2052, 2067, 2519, 2675 |
| HpyCH4IV | ACGT | 1 cut(s) | 2485 |
| HpySE526I | ACGT | 1 cut(s) | 2485 |
| Hsp92II | CATG | 9 cut(s) | 92, 434, 536, 721, 751, 782, 904, 1146, 2194 |
| HspAI | GCGC | 2 cut(s) | 1012, 2470 |
| Ksp22I | TGATCA | 1 cut(s) | 1576 |
| Kzo9I | GATC | 9 cut(s) | 526, 1576, 1740, 1846, 1949, 1989, 2140, 2525, 2783 |
| LmnI | GCTCC | 4 cut(s) | 1442, 1525, 1922, 2018 |
| MaeI | CTAG | 2 cut(s) | 423, 936 |
| MaeII | ACGT | 1 cut(s) | 2485 |
| MaeIII | GTNAC | 7 cut(s) | 256, 740, 974, 1551, 1977, 2430, 2579 |
| MalI | GATC | 9 cut(s) | 528, 1578, 1742, 1848, 1951, 1991, 2142, 2527, 2785 |
| MboI | GATC | 9 cut(s) | 526, 1576, 1740, 1846, 1949, 1989, 2140, 2525, 2783 |
| MfeI | CAATTG | 1 cut(s) | 1721 |
| MflI | RGATCY | 3 cut(s) | 526, 1740, 1949 |
| MhlI | GDGCHC | 3 cut(s) | 1230, 2085, 2481 |
| MlsI | TGGCCA | 3 cut(s) | 857, 997, 1147 |
| MluNI | TGGCCA | 3 cut(s) | 857, 997, 1147 |
| MlyI | GAGTC | 2 cut(s) | 941, 2746 |
| MmeI | TCCRAC | 2 cut(s) | 1834, 1977 |
| Mox20I | TGGCCA | 3 cut(s) | 857, 997, 1147 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1198, 2242 |
| MscI | TGGCCA | 3 cut(s) | 857, 997, 1147 |
| MseI | TTAA | 7 cut(s) | 36, 317, 867, 1197, 1938, 1943, 2304 |
| MslI | CAYNNNNRTG | 4 cut(s) | 93, 270, 537, 1210 |
| Msp20I | TGGCCA | 3 cut(s) | 857, 997, 1147 |
| MspA1I | CMGCKG | 3 cut(s) | 461, 785, 1352 |
| MspCI | CTTAAG | 1 cut(s) | 1942 |
| MspI | CCGG | 2 cut(s) | 29, 99 |
| MspR9I | CCNGG | 6 cut(s) | 30, 100, 854, 1238, 1262, 2106 |
| MunI | CAATTG | 1 cut(s) | 1721 |
| Mva1269I | GAATGC | 2 cut(s) | 1753, 2123 |
| MvaI | CCWGG | 4 cut(s) | 854, 1238, 1262, 2106 |
| NciI | CCSGG | 2 cut(s) | 30, 100 |
| NcoI | CCATGG | 1 cut(s) | 1142 |
| NdeII | GATC | 9 cut(s) | 526, 1576, 1740, 1846, 1949, 1989, 2140, 2525, 2783 |
| NlaIII | CATG | 9 cut(s) | 92, 434, 536, 721, 751, 782, 904, 1146, 2194 |
| NlaIV | GGNNCC | 2 cut(s) | 1951, 2419 |
| NmuCI | GTSAC | 6 cut(s) | 256, 740, 974, 1551, 2430, 2579 |
| NsbI | TGCGCA | 1 cut(s) | 2471 |
| NspI | RCATGY | 3 cut(s) | 92, 751, 904 |
| OliI | CACNNNNGTG | 1 cut(s) | 1210 |
| PaeI | GCATGC | 3 cut(s) | 92, 751, 904 |
| PagI | TCATGA | 1 cut(s) | 532 |
| PaqCI | CACCTGC | 1 cut(s) | 2729 |
| PceI | AGGCCT | 1 cut(s) | 2667 |
| PctI | GAATGC | 2 cut(s) | 1753, 2123 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1198, 2242 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1342, 2105, 2765 |
| PleI | GAGTC | 2 cut(s) | 940, 2745 |
| PpsI | GAGTC | 2 cut(s) | 940, 2745 |
| Ppu21I | YACGTR | 1 cut(s) | 2486 |
| PpuMI | RGGWCCY | 1 cut(s) | 2418 |
| PshBI | ATTAAT | 1 cut(s) | 1197 |
| PsiI | TTATAA | 1 cut(s) | 816 |
| Psp124BI | GAGCTC | 2 cut(s) | 2085, 2481 |
| Psp5II | RGGWCCY | 1 cut(s) | 2418 |
| Psp6I | CCWGG | 4 cut(s) | 852, 1236, 1260, 2104 |
| PspFI | CCCAGC | 2 cut(s) | 1029, 1046 |
| PspGI | CCWGG | 4 cut(s) | 852, 1236, 1260, 2104 |
| PspN4I | GGNNCC | 2 cut(s) | 1951, 2419 |
| PspPI | GGNCC | 6 cut(s) | 101, 154, 646, 2371, 2418, 2515 |
| PspPPI | RGGWCCY | 1 cut(s) | 2418 |
| PstI | CTGCAG | 1 cut(s) | 775 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1352 |
| PsuI | RGATCY | 3 cut(s) | 526, 1740, 1949 |
| PvuII | CAGCTG | 2 cut(s) | 461, 785 |
| RsaI | GTAC | 3 cut(s) | 958, 2034, 2137 |
| RsaNI | GTAC | 3 cut(s) | 957, 2033, 2136 |
| RseI | CAYNNNNRTG | 4 cut(s) | 93, 270, 537, 1210 |
| SacI | GAGCTC | 2 cut(s) | 2085, 2481 |
| SalI | GTCGAC | 1 cut(s) | 2739 |
| SaqAI | TTAA | 7 cut(s) | 36, 317, 867, 1197, 1938, 1943, 2304 |
| Sau3AI | GATC | 9 cut(s) | 526, 1576, 1740, 1846, 1949, 1989, 2140, 2525, 2783 |
| Sau96I | GGNCC | 6 cut(s) | 101, 154, 646, 2371, 2418, 2515 |
| SchI | GAGTC | 2 cut(s) | 941, 2746 |
| ScrFI | CCNGG | 6 cut(s) | 30, 100, 854, 1238, 1262, 2106 |
| SduI | GDGCHC | 3 cut(s) | 1230, 2085, 2481 |
| SfcI | CTRYAG | 2 cut(s) | 771, 1570 |
| SinI | GGWCC | 4 cut(s) | 646, 2371, 2418, 2515 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 93, 270, 537, 1210 |
| SmlI | CTYRAG | 2 cut(s) | 1942, 2749 |
| SmoI | CTYRAG | 2 cut(s) | 1942, 2749 |
| SphI | GCATGC | 3 cut(s) | 92, 751, 904 |
| SseBI | AGGCCT | 1 cut(s) | 2667 |
| SsiI | CCGC | 8 cut(s) | 230, 323, 356, 451, 799, 1350, 1733, 2121 |
| SspI | AATATT | 2 cut(s) | 2117, 2227 |
| SspMI | CTAG | 2 cut(s) | 423, 936 |
| SstI | GAGCTC | 2 cut(s) | 2085, 2481 |
| StuI | AGGCCT | 1 cut(s) | 2667 |
| StyD4I | CCNGG | 6 cut(s) | 28, 98, 852, 1236, 1260, 2104 |
| StyI | CCWWGG | 6 cut(s) | 1142, 1280, 1292, 2128, 2575, 2588 |
| TaaI | ACNGT | 8 cut(s) | 715, 1172, 1401, 1809, 2052, 2067, 2519, 2675 |
| TaiI | ACGT | 1 cut(s) | 2488 |
| TaqI | TCGA | 4 cut(s) | 565, 946, 2389, 2740 |
| TaqII | GACCGA | 1 cut(s) | 634 |
| TatI | WGTACW | 1 cut(s) | 2032 |
| TauI | GCSGC | 2 cut(s) | 801, 1352 |
| Tru1I | TTAA | 7 cut(s) | 36, 317, 867, 1197, 1938, 1943, 2304 |
| Tru9I | TTAA | 7 cut(s) | 36, 317, 867, 1197, 1938, 1943, 2304 |
| TseFI | GTSAC | 6 cut(s) | 256, 740, 974, 1551, 2430, 2579 |
| Tsp45I | GTSAC | 6 cut(s) | 256, 740, 974, 1551, 2430, 2579 |
| TspGWI | ACGGA | 2 cut(s) | 296, 932 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1342, 2105, 2765 |
| Vha464I | CTTAAG | 1 cut(s) | 1942 |
| VpaK11BI | GGWCC | 4 cut(s) | 646, 2371, 2418, 2515 |
| VspI | ATTAAT | 1 cut(s) | 1197 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2425 |
| XapI | RAATTY | 7 cut(s) | 73, 548, 839, 1000, 1857, 2447, 2597 |
| XceI | RCATGY | 3 cut(s) | 92, 751, 904 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1005 |
| XmiI | GTMKAC | 5 cut(s) | 141, 342, 1318, 1332, 2740 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1198, 2242 |
| XspI | CTAG | 2 cut(s) | 423, 936 |