Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 819 |
| Acc16I | TGCGCA | 1 cut(s) | 2429 |
| Acc36I | ACCTGC | 2 cut(s) | 160, 1307 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1345, 2063 |
| AccI | GTMKAC | 4 cut(s) | 144, 345, 1321, 1335 |
| AccIII | TCCGGA | 1 cut(s) | 1810 |
| AciI | CCGC | 8 cut(s) | 101, 152, 326, 414, 454, 710, 1091, 2594 |
| AclWI | GGATC | 8 cut(s) | 537, 1232, 1911, 1924, 2013, 2090, 2468, 2481 |
| AcoI | YGGCCR | 2 cut(s) | 858, 1148 |
| AcsI | RAATTY | 6 cut(s) | 76, 551, 842, 1003, 2405, 2713 |
| AcuI | CTGAAG | 3 cut(s) | 1157, 1442, 2298 |
| AcvI | CACGTG | 1 cut(s) | 890 |
| AdeI | CACNNNGTG | 1 cut(s) | 259 |
| AfaI | GTAC | 4 cut(s) | 961, 1112, 1992, 2075 |
| AflIII | ACRYGT | 2 cut(s) | 887, 889 |
| AjnI | CCWGG | 5 cut(s) | 855, 1240, 1263, 1283, 2062 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1686, 1718 |
| AleI | CACNNNNGTG | 1 cut(s) | 1213 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 432, 464 |
| Alw21I | GWGCWC | 2 cut(s) | 2043, 2439 |
| Alw26I | GTCTC | 7 cut(s) | 120, 275, 920, 1456, 1485, 1491, 1579 |
| AlwI | GGATC | 8 cut(s) | 537, 1232, 1911, 1924, 2013, 2090, 2468, 2481 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1355, 1618 |
| Aor13HI | TCCGGA | 1 cut(s) | 1810 |
| AoxI | GGCC | 9 cut(s) | 104, 571, 858, 1148, 1195, 1442, 2452, 2461, 2623 |
| ApoI | RAATTY | 6 cut(s) | 76, 551, 842, 1003, 2405, 2713 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 549, 581, 1712, 1744 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1933, 2194 |
| AspLEI | GCGC | 4 cut(s) | 511, 1017, 1177, 2430 |
| AspS9I | GGNCC | 5 cut(s) | 104, 1195, 1442, 2326, 2376 |
| AsuC2I | CCSGG | 1 cut(s) | 2513 |
| AsuHPI | GGTGA | 3 cut(s) | 653, 1199, 2549 |
| AvaII | GGWCC | 2 cut(s) | 2326, 2376 |
| AxyI | CCTNAGG | 1 cut(s) | 51 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 943, 976 |
| BalI | TGGCCA | 2 cut(s) | 860, 1150 |
| BamHI | GGATCC | 2 cut(s) | 1916, 2473 |
| BanII | GRGCYC | 3 cut(s) | 2043, 2439, 2744 |
| BbrPI | CACGTG | 1 cut(s) | 890 |
| BbsI | GAAGAC | 5 cut(s) | 12, 18, 755, 1722, 2304 |
| Bbv12I | GWGCWC | 2 cut(s) | 2043, 2439 |
| BccI | CCATC | 3 cut(s) | 597, 1159, 1880 |
| BceAI | ACGGC | 6 cut(s) | 120, 441, 709, 1313, 2194, 2293 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 2027, 2061, 2419, 2453 |
| BciT130I | CCWGG | 5 cut(s) | 857, 1242, 1265, 1285, 2064 |
| BciVI | GTATCC | 1 cut(s) | 2154 |
| BclI | TGATCA | 1 cut(s) | 1579 |
| BcnI | CCSGG | 1 cut(s) | 2513 |
| BcoDI | GTCTC | 7 cut(s) | 120, 275, 920, 1456, 1485, 1491, 1579 |
| BfaI | CTAG | 1 cut(s) | 426 |
| BfmI | CTRYAG | 4 cut(s) | 357, 774, 1047, 2150 |
| BfoI | RGCGCY | 1 cut(s) | 1018 |
| BfuAI | ACCTGC | 2 cut(s) | 160, 1307 |
| BfuI | GTATCC | 1 cut(s) | 2154 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 583, 2460 |
| BmcAI | AGTACT | 1 cut(s) | 2075 |
| Bme1390I | CCNGG | 6 cut(s) | 857, 1242, 1265, 1285, 2064, 2513 |
| Bme18I | GGWCC | 2 cut(s) | 2326, 2376 |
| BmgT120I | GGNCC | 5 cut(s) | 104, 1195, 1442, 2326, 2376 |
| BmiI | GGNNCC | 6 cut(s) | 105, 1220, 1918, 2377, 2475, 2743 |
| BmrFI | CCNGG | 6 cut(s) | 857, 1242, 1265, 1285, 2064, 2513 |
| BmrI | ACTGGG | 1 cut(s) | 1891 |
| BmuI | ACTGGG | 1 cut(s) | 1891 |
| BpiI | GAAGAC | 5 cut(s) | 12, 18, 755, 1722, 2304 |
| BpmI | CTGGAG | 1 cut(s) | 1487 |
| BpuEI | CTTGAG | 2 cut(s) | 1930, 2728 |
| BpuMI | CCSGG | 1 cut(s) | 2513 |
| BsaAI | YACGTR | 2 cut(s) | 890, 2692 |
| BsaWI | WCCGGW | 1 cut(s) | 1810 |
| Bse118I | RCCGGY | 1 cut(s) | 638 |
| Bse1I | ACTGG | 7 cut(s) | 604, 973, 1016, 1897, 1930, 2232, 2397 |
| Bse21I | CCTNAGG | 1 cut(s) | 51 |
| Bse3DI | GCAATG | 3 cut(s) | 1350, 2251, 2728 |
| BseAI | TCCGGA | 1 cut(s) | 1810 |
| BseBI | CCWGG | 5 cut(s) | 857, 1242, 1265, 1285, 2064 |
| BseMI | GCAATG | 3 cut(s) | 1350, 2251, 2728 |
| BseNI | ACTGG | 7 cut(s) | 604, 973, 1016, 1897, 1930, 2232, 2397 |
| BseRI | GAGGAG | 1 cut(s) | 471 |
| BseYI | CCCAGC | 4 cut(s) | 374, 505, 1032, 2737 |
| BsgI | GTGCAG | 3 cut(s) | 480, 1341, 1604 |
| BshFI | GGCC | 9 cut(s) | 106, 573, 860, 1150, 1197, 1444, 2454, 2463, 2625 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2043, 2439 |
| BsiSI | CCGG | 3 cut(s) | 639, 1811, 2512 |
| BslFI | GGGAC | 1 cut(s) | 2630 |
| BsmAI | GTCTC | 7 cut(s) | 120, 275, 920, 1456, 1485, 1491, 1579 |
| BsmBI | CGTCTC | 1 cut(s) | 275 |
| BsmFI | GGGAC | 1 cut(s) | 2630 |
| BsmI | GAATGC | 2 cut(s) | 909, 1207 |
| BsnI | GGCC | 9 cut(s) | 106, 573, 860, 1150, 1197, 1444, 2454, 2463, 2625 |
| Bsp1286I | GDGCHC | 3 cut(s) | 2043, 2439, 2744 |
| Bsp13I | TCCGGA | 1 cut(s) | 1810 |
| Bsp143I | GATC | 8 cut(s) | 529, 1237, 1579, 1916, 2005, 2095, 2473, 2483 |
| Bsp19I | CCATGG | 1 cut(s) | 1145 |
| BspACI | CCGC | 8 cut(s) | 101, 152, 326, 414, 454, 710, 1091, 2594 |
| BspANI | GGCC | 9 cut(s) | 106, 573, 860, 1150, 1197, 1444, 2454, 2463, 2625 |
| BspEI | TCCGGA | 1 cut(s) | 1810 |
| BspHI | TCATGA | 1 cut(s) | 535 |
| BspLI | GGNNCC | 6 cut(s) | 105, 1220, 1918, 2377, 2475, 2743 |
| BspMAI | CTGCAG | 3 cut(s) | 361, 778, 1051 |
| BspMI | ACCTGC | 2 cut(s) | 160, 1307 |
| BspPI | GGATC | 8 cut(s) | 537, 1232, 1911, 1924, 2013, 2090, 2468, 2481 |
| BsrDI | GCAATG | 3 cut(s) | 1350, 2251, 2728 |
| BsrFI | RCCGGY | 1 cut(s) | 638 |
| BsrI | ACTGG | 7 cut(s) | 604, 973, 1016, 1897, 1930, 2232, 2397 |
| BssAI | RCCGGY | 1 cut(s) | 638 |
| BssMI | GATC | 8 cut(s) | 529, 1237, 1579, 1916, 2005, 2095, 2473, 2483 |
| BssNAI | GTATAC | 2 cut(s) | 346, 1336 |
| BssT1I | CCWWGG | 6 cut(s) | 1145, 1222, 1950, 2083, 2533, 2546 |
| Bst1107I | GTATAC | 2 cut(s) | 346, 1336 |
| Bst2UI | CCWGG | 5 cut(s) | 857, 1242, 1265, 1285, 2064 |
| Bst4CI | ACNGT | 5 cut(s) | 164, 718, 1187, 1554, 2025 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 782, 1355, 1382 |
| BstBAI | YACGTR | 2 cut(s) | 890, 2692 |
| BstDSI | CCRYGG | 2 cut(s) | 1145, 1295 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 54, 2383 |
| BstH2I | RGCGCY | 1 cut(s) | 1018 |
| BstHHI | GCGC | 4 cut(s) | 511, 1017, 1177, 2430 |
| BstKTI | GATC | 8 cut(s) | 532, 1240, 1582, 1919, 2008, 2098, 2476, 2486 |
| BstMAI | GTCTC | 7 cut(s) | 120, 275, 920, 1456, 1485, 1491, 1579 |
| BstMBI | GATC | 8 cut(s) | 529, 1237, 1579, 1916, 2005, 2095, 2473, 2483 |
| BstNI | CCWGG | 5 cut(s) | 857, 1242, 1265, 1285, 2064 |
| BstNSI | RCATGY | 5 cut(s) | 95, 272, 754, 1162, 2449 |
| BstSCI | CCNGG | 6 cut(s) | 855, 1240, 1263, 1283, 2062, 2511 |
| BstSFI | CTRYAG | 4 cut(s) | 357, 774, 1047, 2150 |
| BstV2I | GAAGAC | 5 cut(s) | 12, 18, 755, 1722, 2304 |
| BstX2I | RGATCY | 4 cut(s) | 529, 1237, 1916, 2473 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1215, 1271 |
| BstYI | RGATCY | 4 cut(s) | 529, 1237, 1916, 2473 |
| BstZ17I | GTATAC | 2 cut(s) | 346, 1336 |
| Bsu36I | CCTNAGG | 1 cut(s) | 51 |
| BsuI | GTATCC | 1 cut(s) | 2154 |
| BsuRI | GGCC | 9 cut(s) | 106, 573, 860, 1150, 1197, 1444, 2454, 2463, 2625 |
| BtgI | CCRYGG | 2 cut(s) | 1145, 1295 |
| BtgZI | GCGATG | 1 cut(s) | 2718 |
| BtsI | GCAGTG | 5 cut(s) | 1044, 1383, 2043, 2191, 2437 |
| BveI | ACCTGC | 2 cut(s) | 160, 1307 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1355, 1618 |
| CciI | TCATGA | 1 cut(s) | 535 |
| CfoI | GCGC | 4 cut(s) | 511, 1017, 1177, 2430 |
| Cfr10I | RCCGGY | 1 cut(s) | 638 |
| Cfr13I | GGNCC | 5 cut(s) | 104, 1195, 1442, 2326, 2376 |
| Csp6I | GTAC | 4 cut(s) | 960, 1111, 1991, 2074 |
| CviQI | GTAC | 4 cut(s) | 960, 1111, 1991, 2074 |
| DpnI | GATC | 8 cut(s) | 531, 1239, 1581, 1918, 2007, 2097, 2475, 2485 |
| DpnII | GATC | 8 cut(s) | 529, 1237, 1579, 1916, 2005, 2095, 2473, 2483 |
| DraIII | CACNNNGTG | 1 cut(s) | 259 |
| EaeI | YGGCCR | 2 cut(s) | 858, 1148 |
| Ecl136II | GAGCTC | 2 cut(s) | 2041, 2437 |
| Eco130I | CCWWGG | 6 cut(s) | 1145, 1222, 1950, 2083, 2533, 2546 |
| Eco147I | AGGCCT | 1 cut(s) | 2625 |
| Eco24I | GRGCYC | 3 cut(s) | 2043, 2439, 2744 |
| Eco47I | GGWCC | 2 cut(s) | 2326, 2376 |
| Eco53kI | GAGCTC | 2 cut(s) | 2041, 2437 |
| Eco57I | CTGAAG | 3 cut(s) | 1157, 1442, 2298 |
| Eco72I | CACGTG | 1 cut(s) | 890 |
| Eco81I | CCTNAGG | 1 cut(s) | 51 |
| EcoICRI | GAGCTC | 2 cut(s) | 2041, 2437 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 54, 2383 |
| EcoO109I | RGGNCCY | 2 cut(s) | 104, 2376 |
| EcoRI | GAATTC | 1 cut(s) | 76 |
| EcoRII | CCWGG | 5 cut(s) | 855, 1240, 1263, 1283, 2062 |
| EcoT14I | CCWWGG | 6 cut(s) | 1145, 1222, 1950, 2083, 2533, 2546 |
| EcoT22I | ATGCAT | 2 cut(s) | 270, 756 |
| EcoT38I | GRGCYC | 3 cut(s) | 2043, 2439, 2744 |
| ErhI | CCWWGG | 6 cut(s) | 1145, 1222, 1950, 2083, 2533, 2546 |
| Esp3I | CGTCTC | 1 cut(s) | 275 |
| FaqI | GGGAC | 1 cut(s) | 2630 |
| FauI | CCCGC | 2 cut(s) | 94, 461 |
| FbaI | TGATCA | 1 cut(s) | 1579 |
| FblI | GTMKAC | 4 cut(s) | 144, 345, 1321, 1335 |
| FriOI | GRGCYC | 3 cut(s) | 2043, 2439, 2744 |
| FspBI | CTAG | 1 cut(s) | 426 |
| FspI | TGCGCA | 1 cut(s) | 2429 |
| GlaI | GCGC | 4 cut(s) | 510, 1016, 1176, 2429 |
| GsaI | CCCAGC | 4 cut(s) | 378, 509, 1036, 2741 |
| GsuI | CTGGAG | 1 cut(s) | 1487 |
| HaeII | RGCGCY | 1 cut(s) | 1018 |
| HaeIII | GGCC | 9 cut(s) | 106, 573, 860, 1150, 1197, 1444, 2454, 2463, 2625 |
| HapII | CCGG | 3 cut(s) | 639, 1811, 2512 |
| HhaI | GCGC | 4 cut(s) | 511, 1017, 1177, 2430 |
| Hin6I | GCGC | 4 cut(s) | 509, 1015, 1175, 2428 |
| HinP1I | GCGC | 4 cut(s) | 509, 1015, 1175, 2428 |
| HincII | GTYRAC | 3 cut(s) | 248, 2125, 2509 |
| HindII | GTYRAC | 3 cut(s) | 248, 2125, 2509 |
| HindIII | AAGCTT | 1 cut(s) | 2657 |
| HpaI | GTTAAC | 1 cut(s) | 2125 |
| HpaII | CCGG | 3 cut(s) | 639, 1811, 2512 |
| HphI | GGTGA | 3 cut(s) | 653, 1199, 2549 |
| Hpy188III | TCNNGA | 8 cut(s) | 53, 485, 536, 1364, 1504, 1514, 1811, 2581 |
| Hpy99I | CGWCG | 2 cut(s) | 730, 733 |
| HpyAV | CCTTC | 9 cut(s) | 50, 846, 1018, 1125, 1423, 1794, 2353, 2453, 2615 |
| HpyCH4III | ACNGT | 5 cut(s) | 164, 718, 1187, 1554, 2025 |
| HpyCH4IV | ACGT | 2 cut(s) | 889, 2691 |
| HpySE526I | ACGT | 2 cut(s) | 889, 2691 |
| HspAI | GCGC | 4 cut(s) | 509, 1015, 1175, 2428 |
| Kpn2I | TCCGGA | 1 cut(s) | 1810 |
| Ksp22I | TGATCA | 1 cut(s) | 1579 |
| KspAI | GTTAAC | 1 cut(s) | 2125 |
| Kzo9I | GATC | 8 cut(s) | 529, 1237, 1579, 1916, 2005, 2095, 2473, 2483 |
| LmnI | GCTCC | 6 cut(s) | 606, 1210, 1224, 1531, 1889, 2747 |
| MaeI | CTAG | 1 cut(s) | 426 |
| MaeII | ACGT | 2 cut(s) | 889, 2691 |
| MaeIII | GTNAC | 7 cut(s) | 158, 259, 1276, 1899, 1944, 2388, 2537 |
| MalI | GATC | 8 cut(s) | 531, 1239, 1581, 1918, 2007, 2097, 2475, 2485 |
| MboI | GATC | 8 cut(s) | 529, 1237, 1579, 1916, 2005, 2095, 2473, 2483 |
| MflI | RGATCY | 4 cut(s) | 529, 1237, 1916, 2473 |
| MhlI | GDGCHC | 3 cut(s) | 2043, 2439, 2744 |
| MlsI | TGGCCA | 2 cut(s) | 860, 1150 |
| MluNI | TGGCCA | 2 cut(s) | 860, 1150 |
| MmeI | TCCRAC | 3 cut(s) | 1213, 1801, 1944 |
| Mox20I | TGGCCA | 2 cut(s) | 860, 1150 |
| Mph1103I | ATGCAT | 2 cut(s) | 270, 756 |
| MroI | TCCGGA | 1 cut(s) | 1810 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1933, 2194 |
| MscI | TGGCCA | 2 cut(s) | 860, 1150 |
| MseI | TTAA | 6 cut(s) | 36, 320, 870, 1905, 2124, 2259 |
| MslI | CAYNNNNRTG | 5 cut(s) | 96, 273, 540, 888, 1213 |
| Msp20I | TGGCCA | 2 cut(s) | 860, 1150 |
| MspA1I | CMGCKG | 5 cut(s) | 464, 788, 1352, 1540, 1618 |
| MspI | CCGG | 3 cut(s) | 639, 1811, 2512 |
| MspR9I | CCNGG | 6 cut(s) | 857, 1242, 1265, 1285, 2064, 2513 |
| Mva1269I | GAATGC | 2 cut(s) | 909, 1207 |
| MvaI | CCWGG | 5 cut(s) | 857, 1242, 1265, 1285, 2064 |
| NciI | CCSGG | 1 cut(s) | 2513 |
| NcoI | CCATGG | 1 cut(s) | 1145 |
| NdeII | GATC | 8 cut(s) | 529, 1237, 1579, 1916, 2005, 2095, 2473, 2483 |
| NlaIV | GGNNCC | 6 cut(s) | 105, 1220, 1918, 2377, 2475, 2743 |
| NmuCI | GTSAC | 5 cut(s) | 158, 259, 1276, 2388, 2537 |
| NsbI | TGCGCA | 1 cut(s) | 2429 |
| NsiI | ATGCAT | 2 cut(s) | 270, 756 |
| NspI | RCATGY | 5 cut(s) | 95, 272, 754, 1162, 2449 |
| OliI | CACNNNNGTG | 1 cut(s) | 1213 |
| PaeI | GCATGC | 4 cut(s) | 95, 272, 754, 1162 |
| PagI | TCATGA | 1 cut(s) | 535 |
| PceI | AGGCCT | 1 cut(s) | 2625 |
| PctI | GAATGC | 2 cut(s) | 909, 1207 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1933, 2194 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1345, 2063 |
| PmaCI | CACGTG | 1 cut(s) | 890 |
| PmlI | CACGTG | 1 cut(s) | 890 |
| Ppu21I | YACGTR | 2 cut(s) | 890, 2692 |
| PpuMI | RGGWCCY | 1 cut(s) | 2376 |
| PsiI | TTATAA | 1 cut(s) | 819 |
| Psp124BI | GAGCTC | 2 cut(s) | 2043, 2439 |
| Psp5II | RGGWCCY | 1 cut(s) | 2376 |
| Psp6I | CCWGG | 5 cut(s) | 855, 1240, 1263, 1283, 2062 |
| PspCI | CACGTG | 1 cut(s) | 890 |
| PspFI | CCCAGC | 4 cut(s) | 374, 505, 1032, 2737 |
| PspGI | CCWGG | 5 cut(s) | 855, 1240, 1263, 1283, 2062 |
| PspN4I | GGNNCC | 6 cut(s) | 105, 1220, 1918, 2377, 2475, 2743 |
| PspPI | GGNCC | 5 cut(s) | 104, 1195, 1442, 2326, 2376 |
| PspPPI | RGGWCCY | 1 cut(s) | 2376 |
| PstI | CTGCAG | 3 cut(s) | 361, 778, 1051 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1355, 1618 |
| PsuI | RGATCY | 4 cut(s) | 529, 1237, 1916, 2473 |
| PvuII | CAGCTG | 5 cut(s) | 464, 788, 1352, 1540, 1618 |
| RsaI | GTAC | 4 cut(s) | 961, 1112, 1992, 2075 |
| RsaNI | GTAC | 4 cut(s) | 960, 1111, 1991, 2074 |
| RseI | CAYNNNNRTG | 5 cut(s) | 96, 273, 540, 888, 1213 |
| SacI | GAGCTC | 2 cut(s) | 2043, 2439 |
| SaqAI | TTAA | 6 cut(s) | 36, 320, 870, 1905, 2124, 2259 |
| Sau3AI | GATC | 8 cut(s) | 529, 1237, 1579, 1916, 2005, 2095, 2473, 2483 |
| Sau96I | GGNCC | 5 cut(s) | 104, 1195, 1442, 2326, 2376 |
| ScaI | AGTACT | 1 cut(s) | 2075 |
| ScrFI | CCNGG | 6 cut(s) | 857, 1242, 1265, 1285, 2064, 2513 |
| SduI | GDGCHC | 3 cut(s) | 2043, 2439, 2744 |
| SfcI | CTRYAG | 4 cut(s) | 357, 774, 1047, 2150 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 2460 |
| SinI | GGWCC | 2 cut(s) | 2326, 2376 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 96, 273, 540, 888, 1213 |
| SmlI | CTYRAG | 2 cut(s) | 1909, 2707 |
| SmoI | CTYRAG | 2 cut(s) | 1909, 2707 |
| SphI | GCATGC | 4 cut(s) | 95, 272, 754, 1162 |
| SseBI | AGGCCT | 1 cut(s) | 2625 |
| SsiI | CCGC | 8 cut(s) | 101, 152, 326, 414, 454, 710, 1091, 2594 |
| SspI | AATATT | 1 cut(s) | 2179 |
| SspMI | CTAG | 1 cut(s) | 426 |
| SstI | GAGCTC | 2 cut(s) | 2043, 2439 |
| StuI | AGGCCT | 1 cut(s) | 2625 |
| StyD4I | CCNGG | 6 cut(s) | 855, 1240, 1263, 1283, 2062, 2511 |
| StyI | CCWWGG | 6 cut(s) | 1145, 1222, 1950, 2083, 2533, 2546 |
| TaaI | ACNGT | 5 cut(s) | 164, 718, 1187, 1554, 2025 |
| TaiI | ACGT | 2 cut(s) | 892, 2694 |
| TaqI | TCGA | 2 cut(s) | 568, 2347 |
| TatI | WGTACW | 2 cut(s) | 1990, 2073 |
| Tru1I | TTAA | 6 cut(s) | 36, 320, 870, 1905, 2124, 2259 |
| Tru9I | TTAA | 6 cut(s) | 36, 320, 870, 1905, 2124, 2259 |
| TseFI | GTSAC | 5 cut(s) | 158, 259, 1276, 2388, 2537 |
| Tsp45I | GTSAC | 5 cut(s) | 158, 259, 1276, 2388, 2537 |
| TspGWI | ACGGA | 1 cut(s) | 299 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1345, 2063 |
| VpaK11BI | GGWCC | 2 cut(s) | 2326, 2376 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 54, 2383 |
| XapI | RAATTY | 6 cut(s) | 76, 551, 842, 1003, 2405, 2713 |
| XceI | RCATGY | 5 cut(s) | 95, 272, 754, 1162, 2449 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1229 |
| XmiI | GTMKAC | 4 cut(s) | 144, 345, 1321, 1335 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1933, 2194 |
| XspI | CTAG | 1 cut(s) | 426 |
| ZrmI | AGTACT | 1 cut(s) | 2075 |
| Zsp2I | ATGCAT | 2 cut(s) | 270, 756 |