Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 555 |
| Acc16I | TGCGCA | 1 cut(s) | 1946 |
| Acc36I | ACCTGC | 1 cut(s) | 1043 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1081, 1580 |
| AccI | GTMKAC | 3 cut(s) | 81, 1057, 1071 |
| AccIII | TCCGGA | 1 cut(s) | 1327 |
| AciI | CCGC | 6 cut(s) | 62, 150, 190, 446, 827, 2111 |
| AclWI | GGATC | 8 cut(s) | 273, 968, 1428, 1441, 1530, 1607, 1985, 1998 |
| AcoI | YGGCCR | 2 cut(s) | 594, 884 |
| AcsI | RAATTY | 5 cut(s) | 287, 578, 739, 1922, 2230 |
| AcuI | CTGAAG | 3 cut(s) | 893, 1178, 1815 |
| AcvI | CACGTG | 1 cut(s) | 626 |
| AfaI | GTAC | 4 cut(s) | 697, 848, 1509, 1592 |
| AflIII | ACRYGT | 2 cut(s) | 623, 625 |
| AjnI | CCWGG | 5 cut(s) | 591, 976, 999, 1019, 1579 |
| AleI | CACNNNNGTG | 1 cut(s) | 949 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 168, 200 |
| Alw21I | GWGCWC | 2 cut(s) | 1560, 1956 |
| Alw26I | GTCTC | 5 cut(s) | 11, 656, 1192, 1221, 1227 |
| AlwI | GGATC | 8 cut(s) | 273, 968, 1428, 1441, 1530, 1607, 1985, 1998 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1091 |
| Aor13HI | TCCGGA | 1 cut(s) | 1327 |
| AoxI | GGCC | 8 cut(s) | 307, 594, 884, 931, 1178, 1969, 1978, 2140 |
| ApoI | RAATTY | 5 cut(s) | 287, 578, 739, 1922, 2230 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 285, 317 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1450, 1711 |
| AspLEI | GCGC | 4 cut(s) | 247, 753, 913, 1947 |
| AspS9I | GGNCC | 4 cut(s) | 931, 1178, 1843, 1893 |
| AsuC2I | CCSGG | 1 cut(s) | 2030 |
| AsuHPI | GGTGA | 3 cut(s) | 389, 935, 2066 |
| AvaII | GGWCC | 2 cut(s) | 1843, 1893 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 679, 712 |
| BalI | TGGCCA | 2 cut(s) | 596, 886 |
| BamHI | GGATCC | 2 cut(s) | 1433, 1990 |
| BanII | GRGCYC | 3 cut(s) | 1560, 1956, 2261 |
| BbrPI | CACGTG | 1 cut(s) | 626 |
| BbsI | GAAGAC | 2 cut(s) | 491, 1821 |
| Bbv12I | GWGCWC | 2 cut(s) | 1560, 1956 |
| BccI | CCATC | 4 cut(s) | 333, 469, 895, 1397 |
| BceAI | ACGGC | 4 cut(s) | 177, 1049, 1711, 1810 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1544, 1578, 1936, 1970 |
| BciT130I | CCWGG | 5 cut(s) | 593, 978, 1001, 1021, 1581 |
| BciVI | GTATCC | 1 cut(s) | 1671 |
| BcnI | CCSGG | 1 cut(s) | 2030 |
| BcoDI | GTCTC | 5 cut(s) | 11, 656, 1192, 1221, 1227 |
| BfaI | CTAG | 1 cut(s) | 162 |
| BfmI | CTRYAG | 4 cut(s) | 93, 510, 783, 1667 |
| BfoI | RGCGCY | 1 cut(s) | 754 |
| BfuAI | ACCTGC | 1 cut(s) | 1043 |
| BfuI | GTATCC | 1 cut(s) | 1671 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 319, 1977 |
| BmcAI | AGTACT | 1 cut(s) | 1592 |
| Bme1390I | CCNGG | 6 cut(s) | 593, 978, 1001, 1021, 1581, 2030 |
| Bme18I | GGWCC | 2 cut(s) | 1843, 1893 |
| BmgT120I | GGNCC | 4 cut(s) | 931, 1178, 1843, 1893 |
| BmiI | GGNNCC | 5 cut(s) | 956, 1435, 1894, 1992, 2260 |
| BmrFI | CCNGG | 6 cut(s) | 593, 978, 1001, 1021, 1581, 2030 |
| BmrI | ACTGGG | 1 cut(s) | 1408 |
| BmuI | ACTGGG | 1 cut(s) | 1408 |
| BpiI | GAAGAC | 2 cut(s) | 491, 1821 |
| BpmI | CTGGAG | 1 cut(s) | 1223 |
| BpuEI | CTTGAG | 1 cut(s) | 1447 |
| BpuMI | CCSGG | 1 cut(s) | 2030 |
| BsaAI | YACGTR | 2 cut(s) | 626, 2209 |
| BsaWI | WCCGGW | 1 cut(s) | 1327 |
| Bse118I | RCCGGY | 1 cut(s) | 374 |
| Bse1I | ACTGG | 7 cut(s) | 340, 709, 752, 1414, 1447, 1749, 1914 |
| Bse3DI | GCAATG | 3 cut(s) | 1086, 1768, 2245 |
| BseAI | TCCGGA | 1 cut(s) | 1327 |
| BseBI | CCWGG | 5 cut(s) | 593, 978, 1001, 1021, 1581 |
| BseMI | GCAATG | 3 cut(s) | 1086, 1768, 2245 |
| BseMII | CTCAG | 8 cut(s) | 880, 1226, 1232, 1238, 1286, 1325, 1679, 2009 |
| BseNI | ACTGG | 7 cut(s) | 340, 709, 752, 1414, 1447, 1749, 1914 |
| BseRI | GAGGAG | 1 cut(s) | 207 |
| BseYI | CCCAGC | 4 cut(s) | 110, 241, 768, 2254 |
| BsgI | GTGCAG | 2 cut(s) | 216, 1077 |
| BshFI | GGCC | 8 cut(s) | 309, 596, 886, 933, 1180, 1971, 1980, 2142 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1560, 1956 |
| BsiSI | CCGG | 3 cut(s) | 375, 1328, 2029 |
| BslFI | GGGAC | 1 cut(s) | 2147 |
| BsmAI | GTCTC | 5 cut(s) | 11, 656, 1192, 1221, 1227 |
| BsmBI | CGTCTC | 1 cut(s) | 11 |
| BsmFI | GGGAC | 1 cut(s) | 2147 |
| BsmI | GAATGC | 2 cut(s) | 645, 943 |
| BsnI | GGCC | 8 cut(s) | 309, 596, 886, 933, 1180, 1971, 1980, 2142 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1560, 1956, 2261 |
| Bsp13I | TCCGGA | 1 cut(s) | 1327 |
| Bsp143I | GATC | 7 cut(s) | 265, 973, 1433, 1522, 1612, 1990, 2000 |
| Bsp19I | CCATGG | 1 cut(s) | 881 |
| BspACI | CCGC | 6 cut(s) | 62, 150, 190, 446, 827, 2111 |
| BspANI | GGCC | 8 cut(s) | 309, 596, 886, 933, 1180, 1971, 1980, 2142 |
| BspCNI | CTCAG | 8 cut(s) | 879, 1225, 1231, 1237, 1285, 1324, 1680, 2008 |
| BspEI | TCCGGA | 1 cut(s) | 1327 |
| BspHI | TCATGA | 1 cut(s) | 271 |
| BspLI | GGNNCC | 5 cut(s) | 956, 1435, 1894, 1992, 2260 |
| BspMAI | CTGCAG | 3 cut(s) | 97, 514, 787 |
| BspMI | ACCTGC | 1 cut(s) | 1043 |
| BspPI | GGATC | 8 cut(s) | 273, 968, 1428, 1441, 1530, 1607, 1985, 1998 |
| BsrDI | GCAATG | 3 cut(s) | 1086, 1768, 2245 |
| BsrFI | RCCGGY | 1 cut(s) | 374 |
| BsrI | ACTGG | 7 cut(s) | 340, 709, 752, 1414, 1447, 1749, 1914 |
| BssAI | RCCGGY | 1 cut(s) | 374 |
| BssMI | GATC | 7 cut(s) | 265, 973, 1433, 1522, 1612, 1990, 2000 |
| BssNAI | GTATAC | 2 cut(s) | 82, 1072 |
| BssT1I | CCWWGG | 6 cut(s) | 881, 958, 1467, 1600, 2050, 2063 |
| Bst1107I | GTATAC | 2 cut(s) | 82, 1072 |
| Bst2UI | CCWGG | 5 cut(s) | 593, 978, 1001, 1021, 1581 |
| Bst4CI | ACNGT | 4 cut(s) | 454, 923, 1290, 1542 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 518, 1091, 1118 |
| BstBAI | YACGTR | 2 cut(s) | 626, 2209 |
| BstC8I | GCNNGC | 8 cut(s) | 6, 93, 154, 167, 311, 488, 896, 2009 |
| BstDEI | CTNAG | 8 cut(s) | 866, 1212, 1218, 1224, 1272, 1311, 1688, 1995 |
| BstDSI | CCRYGG | 2 cut(s) | 881, 1031 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1900 |
| BstH2I | RGCGCY | 1 cut(s) | 754 |
| BstHHI | GCGC | 4 cut(s) | 247, 753, 913, 1947 |
| BstKTI | GATC | 7 cut(s) | 268, 976, 1436, 1525, 1615, 1993, 2003 |
| BstMAI | GTCTC | 5 cut(s) | 11, 656, 1192, 1221, 1227 |
| BstMBI | GATC | 7 cut(s) | 265, 973, 1433, 1522, 1612, 1990, 2000 |
| BstNI | CCWGG | 5 cut(s) | 593, 978, 1001, 1021, 1581 |
| BstNSI | RCATGY | 4 cut(s) | 8, 490, 898, 1966 |
| BstSCI | CCNGG | 6 cut(s) | 591, 976, 999, 1019, 1579, 2028 |
| BstSFI | CTRYAG | 4 cut(s) | 93, 510, 783, 1667 |
| BstV2I | GAAGAC | 2 cut(s) | 491, 1821 |
| BstX2I | RGATCY | 4 cut(s) | 265, 973, 1433, 1990 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 951, 1007 |
| BstYI | RGATCY | 4 cut(s) | 265, 973, 1433, 1990 |
| BstZ17I | GTATAC | 2 cut(s) | 82, 1072 |
| BsuI | GTATCC | 1 cut(s) | 1671 |
| BsuRI | GGCC | 8 cut(s) | 309, 596, 886, 933, 1180, 1971, 1980, 2142 |
| BtgI | CCRYGG | 2 cut(s) | 881, 1031 |
| BtgZI | GCGATG | 1 cut(s) | 2235 |
| BtsI | GCAGTG | 5 cut(s) | 780, 1119, 1560, 1708, 1954 |
| BveI | ACCTGC | 1 cut(s) | 1043 |
| Cac8I | GCNNGC | 8 cut(s) | 6, 93, 154, 167, 311, 488, 896, 2009 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1091 |
| CciI | TCATGA | 1 cut(s) | 271 |
| CfoI | GCGC | 4 cut(s) | 247, 753, 913, 1947 |
| Cfr10I | RCCGGY | 1 cut(s) | 374 |
| Cfr13I | GGNCC | 4 cut(s) | 931, 1178, 1843, 1893 |
| Csp6I | GTAC | 4 cut(s) | 696, 847, 1508, 1591 |
| CviQI | GTAC | 4 cut(s) | 696, 847, 1508, 1591 |
| DdeI | CTNAG | 8 cut(s) | 866, 1212, 1218, 1224, 1272, 1311, 1688, 1995 |
| DpnI | GATC | 7 cut(s) | 267, 975, 1435, 1524, 1614, 1992, 2002 |
| DpnII | GATC | 7 cut(s) | 265, 973, 1433, 1522, 1612, 1990, 2000 |
| EaeI | YGGCCR | 2 cut(s) | 594, 884 |
| Ecl136II | GAGCTC | 2 cut(s) | 1558, 1954 |
| Eco130I | CCWWGG | 6 cut(s) | 881, 958, 1467, 1600, 2050, 2063 |
| Eco147I | AGGCCT | 1 cut(s) | 2142 |
| Eco24I | GRGCYC | 3 cut(s) | 1560, 1956, 2261 |
| Eco47I | GGWCC | 2 cut(s) | 1843, 1893 |
| Eco53kI | GAGCTC | 2 cut(s) | 1558, 1954 |
| Eco57I | CTGAAG | 3 cut(s) | 893, 1178, 1815 |
| Eco72I | CACGTG | 1 cut(s) | 626 |
| EcoICRI | GAGCTC | 2 cut(s) | 1558, 1954 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1900 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1893 |
| EcoRII | CCWGG | 5 cut(s) | 591, 976, 999, 1019, 1579 |
| EcoT14I | CCWWGG | 6 cut(s) | 881, 958, 1467, 1600, 2050, 2063 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 492 |
| EcoT38I | GRGCYC | 3 cut(s) | 1560, 1956, 2261 |
| ErhI | CCWWGG | 6 cut(s) | 881, 958, 1467, 1600, 2050, 2063 |
| Esp3I | CGTCTC | 1 cut(s) | 11 |
| FaqI | GGGAC | 1 cut(s) | 2147 |
| FauI | CCCGC | 1 cut(s) | 197 |
| FblI | GTMKAC | 3 cut(s) | 81, 1057, 1071 |
| FriOI | GRGCYC | 3 cut(s) | 1560, 1956, 2261 |
| FspBI | CTAG | 1 cut(s) | 162 |
| FspI | TGCGCA | 1 cut(s) | 1946 |
| GlaI | GCGC | 4 cut(s) | 246, 752, 912, 1946 |
| GsaI | CCCAGC | 4 cut(s) | 114, 245, 772, 2258 |
| GsuI | CTGGAG | 1 cut(s) | 1223 |
| HaeII | RGCGCY | 1 cut(s) | 754 |
| HaeIII | GGCC | 8 cut(s) | 309, 596, 886, 933, 1180, 1971, 1980, 2142 |
| HapII | CCGG | 3 cut(s) | 375, 1328, 2029 |
| HhaI | GCGC | 4 cut(s) | 247, 753, 913, 1947 |
| Hin6I | GCGC | 4 cut(s) | 245, 751, 911, 1945 |
| HinP1I | GCGC | 4 cut(s) | 245, 751, 911, 1945 |
| HincII | GTYRAC | 2 cut(s) | 1642, 2026 |
| HindII | GTYRAC | 2 cut(s) | 1642, 2026 |
| HindIII | AAGCTT | 1 cut(s) | 2174 |
| HinfI | GANTC | 9 cut(s) | 380, 409, 671, 722, 776, 1331, 1475, 1712, 1811 |
| HpaI | GTTAAC | 1 cut(s) | 1642 |
| HpaII | CCGG | 3 cut(s) | 375, 1328, 2029 |
| HphI | GGTGA | 3 cut(s) | 389, 935, 2066 |
| Hpy188III | TCNNGA | 7 cut(s) | 221, 272, 1100, 1240, 1250, 1328, 2098 |
| Hpy99I | CGWCG | 1 cut(s) | 469 |
| HpyAV | CCTTC | 8 cut(s) | 582, 754, 861, 1159, 1311, 1870, 1970, 2132 |
| HpyCH4III | ACNGT | 4 cut(s) | 454, 923, 1290, 1542 |
| HpyCH4IV | ACGT | 2 cut(s) | 625, 2208 |
| HpyF3I | CTNAG | 8 cut(s) | 866, 1212, 1218, 1224, 1272, 1311, 1688, 1995 |
| HpySE526I | ACGT | 2 cut(s) | 625, 2208 |
| HspAI | GCGC | 4 cut(s) | 245, 751, 911, 1945 |
| Kpn2I | TCCGGA | 1 cut(s) | 1327 |
| KspAI | GTTAAC | 1 cut(s) | 1642 |
| Kzo9I | GATC | 7 cut(s) | 265, 973, 1433, 1522, 1612, 1990, 2000 |
| LmnI | GCTCC | 6 cut(s) | 342, 946, 960, 1267, 1406, 2264 |
| MaeI | CTAG | 1 cut(s) | 162 |
| MaeII | ACGT | 2 cut(s) | 625, 2208 |
| MaeIII | GTNAC | 5 cut(s) | 1012, 1416, 1461, 1905, 2054 |
| MalI | GATC | 7 cut(s) | 267, 975, 1435, 1524, 1614, 1992, 2002 |
| MboI | GATC | 7 cut(s) | 265, 973, 1433, 1522, 1612, 1990, 2000 |
| MflI | RGATCY | 4 cut(s) | 265, 973, 1433, 1990 |
| MhlI | GDGCHC | 3 cut(s) | 1560, 1956, 2261 |
| MlsI | TGGCCA | 2 cut(s) | 596, 886 |
| MluCI | AATT | 9 cut(s) | 255, 287, 578, 739, 1741, 1777, 1922, 1982, 2230 |
| MluNI | TGGCCA | 2 cut(s) | 596, 886 |
| MmeI | TCCRAC | 3 cut(s) | 949, 1318, 1461 |
| Mox20I | TGGCCA | 2 cut(s) | 596, 886 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 492 |
| MroI | TCCGGA | 1 cut(s) | 1327 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1450, 1711 |
| MscI | TGGCCA | 2 cut(s) | 596, 886 |
| MseI | TTAA | 5 cut(s) | 56, 606, 1422, 1641, 1776 |
| MslI | CAYNNNNRTG | 4 cut(s) | 9, 276, 624, 949 |
| Msp20I | TGGCCA | 2 cut(s) | 596, 886 |
| MspA1I | CMGCKG | 4 cut(s) | 200, 524, 1088, 1276 |
| MspI | CCGG | 3 cut(s) | 375, 1328, 2029 |
| MspR9I | CCNGG | 6 cut(s) | 593, 978, 1001, 1021, 1581, 2030 |
| Mva1269I | GAATGC | 2 cut(s) | 645, 943 |
| MvaI | CCWGG | 5 cut(s) | 593, 978, 1001, 1021, 1581 |
| NciI | CCSGG | 1 cut(s) | 2030 |
| NcoI | CCATGG | 1 cut(s) | 881 |
| NdeII | GATC | 7 cut(s) | 265, 973, 1433, 1522, 1612, 1990, 2000 |
| NlaIV | GGNNCC | 5 cut(s) | 956, 1435, 1894, 1992, 2260 |
| NmuCI | GTSAC | 2 cut(s) | 1905, 2054 |
| NsbI | TGCGCA | 1 cut(s) | 1946 |
| NsiI | ATGCAT | 2 cut(s) | 6, 492 |
| NspI | RCATGY | 4 cut(s) | 8, 490, 898, 1966 |
| OliI | CACNNNNGTG | 1 cut(s) | 949 |
| PaeI | GCATGC | 3 cut(s) | 8, 490, 898 |
| PagI | TCATGA | 1 cut(s) | 271 |
| PceI | AGGCCT | 1 cut(s) | 2142 |
| PctI | GAATGC | 2 cut(s) | 645, 943 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1450, 1711 |
| PfeI | GAWTC | 9 cut(s) | 380, 409, 671, 722, 776, 1331, 1475, 1712, 1811 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1081, 1580 |
| PmaCI | CACGTG | 1 cut(s) | 626 |
| PmlI | CACGTG | 1 cut(s) | 626 |
| Ppu21I | YACGTR | 2 cut(s) | 626, 2209 |
| PpuMI | RGGWCCY | 1 cut(s) | 1893 |
| PsiI | TTATAA | 1 cut(s) | 555 |
| Psp124BI | GAGCTC | 2 cut(s) | 1560, 1956 |
| Psp5II | RGGWCCY | 1 cut(s) | 1893 |
| Psp6I | CCWGG | 5 cut(s) | 591, 976, 999, 1019, 1579 |
| PspCI | CACGTG | 1 cut(s) | 626 |
| PspFI | CCCAGC | 4 cut(s) | 110, 241, 768, 2254 |
| PspGI | CCWGG | 5 cut(s) | 591, 976, 999, 1019, 1579 |
| PspN4I | GGNNCC | 5 cut(s) | 956, 1435, 1894, 1992, 2260 |
| PspPI | GGNCC | 4 cut(s) | 931, 1178, 1843, 1893 |
| PspPPI | RGGWCCY | 1 cut(s) | 1893 |
| PstI | CTGCAG | 3 cut(s) | 97, 514, 787 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1091 |
| PsuI | RGATCY | 4 cut(s) | 265, 973, 1433, 1990 |
| PvuII | CAGCTG | 4 cut(s) | 200, 524, 1088, 1276 |
| RsaI | GTAC | 4 cut(s) | 697, 848, 1509, 1592 |
| RsaNI | GTAC | 4 cut(s) | 696, 847, 1508, 1591 |
| RseI | CAYNNNNRTG | 4 cut(s) | 9, 276, 624, 949 |
| SacI | GAGCTC | 2 cut(s) | 1560, 1956 |
| SaqAI | TTAA | 5 cut(s) | 56, 606, 1422, 1641, 1776 |
| Sau3AI | GATC | 7 cut(s) | 265, 973, 1433, 1522, 1612, 1990, 2000 |
| Sau96I | GGNCC | 4 cut(s) | 931, 1178, 1843, 1893 |
| ScaI | AGTACT | 1 cut(s) | 1592 |
| ScrFI | CCNGG | 6 cut(s) | 593, 978, 1001, 1021, 1581, 2030 |
| SduI | GDGCHC | 3 cut(s) | 1560, 1956, 2261 |
| SfcI | CTRYAG | 4 cut(s) | 93, 510, 783, 1667 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 1977 |
| SinI | GGWCC | 2 cut(s) | 1843, 1893 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 9, 276, 624, 949 |
| SmlI | CTYRAG | 1 cut(s) | 1426 |
| SmoI | CTYRAG | 1 cut(s) | 1426 |
| SphI | GCATGC | 3 cut(s) | 8, 490, 898 |
| Sse9I | AATT | 9 cut(s) | 255, 287, 578, 739, 1741, 1777, 1922, 1982, 2230 |
| SseBI | AGGCCT | 1 cut(s) | 2142 |
| SsiI | CCGC | 6 cut(s) | 62, 150, 190, 446, 827, 2111 |
| SspI | AATATT | 1 cut(s) | 1696 |
| SspMI | CTAG | 1 cut(s) | 162 |
| SstI | GAGCTC | 2 cut(s) | 1560, 1956 |
| StuI | AGGCCT | 1 cut(s) | 2142 |
| StyD4I | CCNGG | 6 cut(s) | 591, 976, 999, 1019, 1579, 2028 |
| StyI | CCWWGG | 6 cut(s) | 881, 958, 1467, 1600, 2050, 2063 |
| TaaI | ACNGT | 4 cut(s) | 454, 923, 1290, 1542 |
| TaiI | ACGT | 2 cut(s) | 628, 2211 |
| TaqI | TCGA | 2 cut(s) | 304, 1864 |
| TasI | AATT | 9 cut(s) | 255, 287, 578, 739, 1741, 1777, 1922, 1982, 2230 |
| TatI | WGTACW | 2 cut(s) | 1507, 1590 |
| TfiI | GAWTC | 9 cut(s) | 380, 409, 671, 722, 776, 1331, 1475, 1712, 1811 |
| Tru1I | TTAA | 5 cut(s) | 56, 606, 1422, 1641, 1776 |
| Tru9I | TTAA | 5 cut(s) | 56, 606, 1422, 1641, 1776 |
| TseFI | GTSAC | 2 cut(s) | 1905, 2054 |
| Tsp45I | GTSAC | 2 cut(s) | 1905, 2054 |
| TspGWI | ACGGA | 1 cut(s) | 35 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1081, 1580 |
| VpaK11BI | GGWCC | 2 cut(s) | 1843, 1893 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1900 |
| XapI | RAATTY | 5 cut(s) | 287, 578, 739, 1922, 2230 |
| XceI | RCATGY | 4 cut(s) | 8, 490, 898, 1966 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 965 |
| XmiI | GTMKAC | 3 cut(s) | 81, 1057, 1071 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1450, 1711 |
| XspI | CTAG | 1 cut(s) | 162 |
| ZrmI | AGTACT | 1 cut(s) | 1592 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 492 |