Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 816 |
| AarI | CACCTGC | 1 cut(s) | 2690 |
| Acc16I | TGCGCA | 1 cut(s) | 2429 |
| Acc36I | ACCTGC | 3 cut(s) | 157, 1304, 2690 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1342 |
| AccI | GTMKAC | 5 cut(s) | 141, 342, 1318, 1332, 2701 |
| AccII | CGCG | 1 cut(s) | 98 |
| AciI | CCGC | 9 cut(s) | 98, 323, 356, 451, 786, 1353, 1475, 2091, 2636 |
| AclWI | GGATC | 5 cut(s) | 534, 1693, 1902, 1915, 2093 |
| AcoI | YGGCCR | 2 cut(s) | 855, 1145 |
| AcsI | RAATTY | 4 cut(s) | 73, 548, 1000, 2405 |
| AcuI | CTGAAG | 4 cut(s) | 1154, 1442, 1487, 2301 |
| AfaI | GTAC | 4 cut(s) | 958, 1992, 2075, 2095 |
| AflII | CTTAAG | 1 cut(s) | 1900 |
| AjiI | CACGTC | 1 cut(s) | 2710 |
| AjnI | CCWGG | 5 cut(s) | 105, 852, 1280, 1998, 2062 |
| AleI | CACNNNNGTG | 1 cut(s) | 1210 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 429, 461 |
| Alw21I | GWGCWC | 2 cut(s) | 2043, 2439 |
| Alw26I | GTCTC | 5 cut(s) | 272, 1123, 1407, 1456, 1485 |
| AlwI | GGATC | 5 cut(s) | 534, 1693, 1902, 1915, 2093 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1603, 1630 |
| AoxI | GGCC | 8 cut(s) | 101, 568, 855, 1145, 1442, 2452, 2461, 2623 |
| ApaI | GGGCCC | 1 cut(s) | 105 |
| ApoI | RAATTY | 4 cut(s) | 73, 548, 1000, 2405 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 546, 578, 1528, 1560, 1697, 1729 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2197 |
| AspLEI | GCGC | 3 cut(s) | 98, 1014, 2430 |
| AspS9I | GGNCC | 6 cut(s) | 101, 102, 1442, 2329, 2376, 2473 |
| AsuC2I | CCSGG | 1 cut(s) | 2513 |
| AsuHPI | GGTGA | 4 cut(s) | 32, 650, 1196, 2519 |
| AvaII | GGWCC | 3 cut(s) | 2329, 2376, 2473 |
| AxyI | CCTNAGG | 2 cut(s) | 48, 1326 |
| BaeGI | GKGCMC | 1 cut(s) | 105 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 940, 973 |
| BalI | TGGCCA | 2 cut(s) | 857, 1147 |
| BamHI | GGATCC | 1 cut(s) | 1907 |
| BanII | GRGCYC | 5 cut(s) | 105, 1176, 2043, 2439, 2747 |
| BbsI | GAAGAC | 4 cut(s) | 6, 752, 1920, 2307 |
| Bbv12I | GWGCWC | 2 cut(s) | 2043, 2439 |
| BbvCI | CCTCAGC | 1 cut(s) | 1735 |
| BccI | CCATC | 9 cut(s) | 594, 841, 1120, 1156, 1175, 1578, 1674, 1871, 2605 |
| BceAI | ACGGC | 2 cut(s) | 438, 2197 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2419, 2453 |
| BciT130I | CCWGG | 5 cut(s) | 107, 854, 1282, 2000, 2064 |
| BciVI | GTATCC | 1 cut(s) | 1119 |
| BclI | TGATCA | 1 cut(s) | 1582 |
| BcnI | CCSGG | 1 cut(s) | 2513 |
| BcoDI | GTCTC | 5 cut(s) | 272, 1123, 1407, 1456, 1485 |
| BfaI | CTAG | 3 cut(s) | 423, 828, 1062 |
| BfmI | CTRYAG | 4 cut(s) | 771, 1044, 1576, 1604 |
| BfoI | RGCGCY | 1 cut(s) | 1015 |
| BfrI | CTTAAG | 1 cut(s) | 1900 |
| BfuAI | ACCTGC | 3 cut(s) | 157, 1304, 2690 |
| BfuI | GTATCC | 1 cut(s) | 1119 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 580, 2460 |
| BlpI | GCTNAGC | 1 cut(s) | 621 |
| BmcAI | AGTACT | 1 cut(s) | 2075 |
| Bme1390I | CCNGG | 6 cut(s) | 107, 854, 1282, 2000, 2064, 2513 |
| Bme18I | GGWCC | 3 cut(s) | 2329, 2376, 2473 |
| BmgBI | CACGTC | 1 cut(s) | 2710 |
| BmgT120I | GGNCC | 6 cut(s) | 101, 102, 1442, 2329, 2376, 2473 |
| BmiI | GGNNCC | 8 cut(s) | 102, 103, 104, 1217, 1864, 1909, 2377, 2475 |
| BmrFI | CCNGG | 6 cut(s) | 107, 854, 1282, 2000, 2064, 2513 |
| BmrI | ACTGGG | 1 cut(s) | 1744 |
| BmsI | GCATC | 9 cut(s) | 185, 187, 592, 903, 1275, 1291, 1766, 1892, 2744 |
| BmuI | ACTGGG | 1 cut(s) | 1744 |
| BoxI | GACNNNNGTC | 1 cut(s) | 10 |
| BpiI | GAAGAC | 4 cut(s) | 6, 752, 1920, 2307 |
| BpmI | CTGGAG | 1 cut(s) | 1995 |
| Bpu10I | CCTNAGC | 2 cut(s) | 507, 1735 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 621 |
| BpuMI | CCSGG | 1 cut(s) | 2513 |
| BsaAI | YACGTR | 1 cut(s) | 2695 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 50, 80 |
| Bse118I | RCCGGY | 1 cut(s) | 1444 |
| Bse1I | ACTGG | 7 cut(s) | 970, 1678, 1750, 2226, 2235, 2397, 2754 |
| Bse21I | CCTNAGG | 2 cut(s) | 48, 1326 |
| Bse3DI | GCAATG | 3 cut(s) | 1347, 2194, 2254 |
| BseBI | CCWGG | 5 cut(s) | 107, 854, 1282, 2000, 2064 |
| BseGI | GGATG | 8 cut(s) | 202, 605, 918, 1039, 1112, 1290, 1570, 1883 |
| BseMI | GCAATG | 3 cut(s) | 1347, 2194, 2254 |
| BseNI | ACTGG | 7 cut(s) | 970, 1678, 1750, 2226, 2235, 2397, 2754 |
| BseRI | GAGGAG | 1 cut(s) | 468 |
| BseSI | GKGCMC | 1 cut(s) | 105 |
| BseYI | CCCAGC | 2 cut(s) | 502, 1029 |
| BsgI | GTGCAG | 3 cut(s) | 477, 1616, 1658 |
| Bsh1236I | CGCG | 1 cut(s) | 98 |
| BshFI | GGCC | 8 cut(s) | 103, 570, 857, 1147, 1444, 2454, 2463, 2625 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2043, 2439 |
| BsiSI | CCGG | 2 cut(s) | 1445, 2512 |
| BslFI | GGGAC | 1 cut(s) | 2630 |
| BsmAI | GTCTC | 5 cut(s) | 272, 1123, 1407, 1456, 1485 |
| BsmFI | GGGAC | 1 cut(s) | 2630 |
| BsmI | GAATGC | 2 cut(s) | 1155, 2081 |
| BsnI | GGCC | 8 cut(s) | 103, 570, 857, 1147, 1444, 2454, 2463, 2625 |
| Bsp120I | GGGCCC | 1 cut(s) | 101 |
| Bsp1286I | GDGCHC | 5 cut(s) | 105, 1176, 2043, 2439, 2747 |
| Bsp143I | GATC | 8 cut(s) | 526, 1234, 1582, 1698, 1907, 1947, 2098, 2483 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 621 |
| Bsp19I | CCATGG | 1 cut(s) | 1142 |
| BspACI | CCGC | 9 cut(s) | 98, 323, 356, 451, 786, 1353, 1475, 2091, 2636 |
| BspANI | GGCC | 8 cut(s) | 103, 570, 857, 1147, 1444, 2454, 2463, 2625 |
| BspFNI | CGCG | 1 cut(s) | 98 |
| BspHI | TCATGA | 1 cut(s) | 532 |
| BspLI | GGNNCC | 8 cut(s) | 102, 103, 104, 1217, 1864, 1909, 2377, 2475 |
| BspMAI | CTGCAG | 3 cut(s) | 775, 1048, 1608 |
| BspMI | ACCTGC | 3 cut(s) | 157, 1304, 2690 |
| BspPI | GGATC | 5 cut(s) | 534, 1693, 1902, 1915, 2093 |
| BspTI | CTTAAG | 1 cut(s) | 1900 |
| BsrDI | GCAATG | 3 cut(s) | 1347, 2194, 2254 |
| BsrFI | RCCGGY | 1 cut(s) | 1444 |
| BsrI | ACTGG | 7 cut(s) | 970, 1678, 1750, 2226, 2235, 2397, 2754 |
| BssAI | RCCGGY | 1 cut(s) | 1444 |
| BssMI | GATC | 8 cut(s) | 526, 1234, 1582, 1698, 1907, 1947, 2098, 2483 |
| BssNAI | GTATAC | 2 cut(s) | 343, 1333 |
| BssT1I | CCWWGG | 6 cut(s) | 821, 1142, 1219, 2086, 2533, 2546 |
| Bst1107I | GTATAC | 2 cut(s) | 343, 1333 |
| Bst2UI | CCWGG | 5 cut(s) | 107, 854, 1282, 2000, 2064 |
| Bst4CI | ACNGT | 7 cut(s) | 161, 715, 1375, 1401, 1557, 2010, 2025 |
| Bst6I | CTCTTC | 3 cut(s) | 126, 924, 1410 |
| BstAFI | CTTAAG | 1 cut(s) | 1900 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 779 |
| BstBAI | YACGTR | 1 cut(s) | 2695 |
| BstDSI | CCRYGG | 3 cut(s) | 1142, 1168, 2241 |
| BstEII | GGTNACC | 1 cut(s) | 2507 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 51, 2383 |
| BstF5I | GGATG | 8 cut(s) | 202, 605, 918, 1039, 1112, 1290, 1570, 1883 |
| BstFNI | CGCG | 1 cut(s) | 98 |
| BstH2I | RGCGCY | 1 cut(s) | 1015 |
| BstHHI | GCGC | 3 cut(s) | 98, 1014, 2430 |
| BstKTI | GATC | 8 cut(s) | 529, 1237, 1585, 1701, 1910, 1950, 2101, 2486 |
| BstMAI | GTCTC | 5 cut(s) | 272, 1123, 1407, 1456, 1485 |
| BstMBI | GATC | 8 cut(s) | 526, 1234, 1582, 1698, 1907, 1947, 2098, 2483 |
| BstNI | CCWGG | 5 cut(s) | 107, 854, 1282, 2000, 2064 |
| BstNSI | RCATGY | 5 cut(s) | 92, 96, 269, 751, 904 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 10 |
| BstPI | GGTNACC | 1 cut(s) | 2507 |
| BstSCI | CCNGG | 6 cut(s) | 105, 852, 1280, 1998, 2062, 2511 |
| BstSFI | CTRYAG | 4 cut(s) | 771, 1044, 1576, 1604 |
| BstSLI | GKGCMC | 1 cut(s) | 105 |
| BstUI | CGCG | 1 cut(s) | 98 |
| BstV2I | GAAGAC | 4 cut(s) | 6, 752, 1920, 2307 |
| BstX2I | RGATCY | 3 cut(s) | 526, 1698, 1907 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1212 |
| BstYI | RGATCY | 3 cut(s) | 526, 1698, 1907 |
| BstZ17I | GTATAC | 2 cut(s) | 343, 1333 |
| Bsu36I | CCTNAGG | 2 cut(s) | 48, 1326 |
| BsuI | GTATCC | 1 cut(s) | 1119 |
| BsuRI | GGCC | 8 cut(s) | 103, 570, 857, 1147, 1444, 2454, 2463, 2625 |
| BtgI | CCRYGG | 3 cut(s) | 1142, 1168, 2241 |
| BtgZI | GCGATG | 1 cut(s) | 2700 |
| BtrI | CACGTC | 1 cut(s) | 2710 |
| BtsCI | GGATG | 8 cut(s) | 202, 605, 918, 1039, 1112, 1290, 1570, 1883 |
| BtsI | GCAGTG | 3 cut(s) | 1041, 2043, 2437 |
| BveI | ACCTGC | 3 cut(s) | 157, 1304, 2690 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1603, 1630 |
| CciI | TCATGA | 1 cut(s) | 532 |
| CfoI | GCGC | 3 cut(s) | 98, 1014, 2430 |
| Cfr10I | RCCGGY | 1 cut(s) | 1444 |
| Cfr13I | GGNCC | 6 cut(s) | 101, 102, 1442, 2329, 2376, 2473 |
| Csp6I | GTAC | 4 cut(s) | 957, 1991, 2074, 2094 |
| CviQI | GTAC | 4 cut(s) | 957, 1991, 2074, 2094 |
| DpnI | GATC | 8 cut(s) | 528, 1236, 1584, 1700, 1909, 1949, 2100, 2485 |
| DpnII | GATC | 8 cut(s) | 526, 1234, 1582, 1698, 1907, 1947, 2098, 2483 |
| EaeI | YGGCCR | 2 cut(s) | 855, 1145 |
| Eam1104I | CTCTTC | 3 cut(s) | 126, 924, 1410 |
| EarI | CTCTTC | 3 cut(s) | 126, 924, 1410 |
| Ecl136II | GAGCTC | 2 cut(s) | 2041, 2437 |
| Eco130I | CCWWGG | 6 cut(s) | 821, 1142, 1219, 2086, 2533, 2546 |
| Eco147I | AGGCCT | 1 cut(s) | 2625 |
| Eco24I | GRGCYC | 5 cut(s) | 105, 1176, 2043, 2439, 2747 |
| Eco47I | GGWCC | 3 cut(s) | 2329, 2376, 2473 |
| Eco53kI | GAGCTC | 2 cut(s) | 2041, 2437 |
| Eco57I | CTGAAG | 4 cut(s) | 1154, 1442, 1487, 2301 |
| Eco81I | CCTNAGG | 2 cut(s) | 48, 1326 |
| Eco91I | GGTNACC | 1 cut(s) | 2507 |
| EcoICRI | GAGCTC | 2 cut(s) | 2041, 2437 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 51, 2383 |
| EcoO109I | RGGNCCY | 4 cut(s) | 101, 102, 2376, 2473 |
| EcoO65I | GGTNACC | 1 cut(s) | 2507 |
| EcoRI | GAATTC | 1 cut(s) | 73 |
| EcoRII | CCWGG | 5 cut(s) | 105, 852, 1280, 1998, 2062 |
| EcoT14I | CCWWGG | 6 cut(s) | 821, 1142, 1219, 2086, 2533, 2546 |
| EcoT22I | ATGCAT | 2 cut(s) | 94, 267 |
| EcoT38I | GRGCYC | 5 cut(s) | 105, 1176, 2043, 2439, 2747 |
| ErhI | CCWWGG | 6 cut(s) | 821, 1142, 1219, 2086, 2533, 2546 |
| FaqI | GGGAC | 1 cut(s) | 2630 |
| FauI | CCCGC | 2 cut(s) | 91, 458 |
| FbaI | TGATCA | 1 cut(s) | 1582 |
| FblI | GTMKAC | 5 cut(s) | 141, 342, 1318, 1332, 2701 |
| FokI | GGATG | 8 cut(s) | 209, 612, 925, 1046, 1099, 1297, 1557, 1870 |
| FriOI | GRGCYC | 5 cut(s) | 105, 1176, 2043, 2439, 2747 |
| FspBI | CTAG | 3 cut(s) | 423, 828, 1062 |
| FspI | TGCGCA | 1 cut(s) | 2429 |
| GlaI | GCGC | 3 cut(s) | 97, 1013, 2429 |
| GsaI | CCCAGC | 2 cut(s) | 506, 1033 |
| GsuI | CTGGAG | 1 cut(s) | 1995 |
| HaeII | RGCGCY | 1 cut(s) | 1015 |
| HaeIII | GGCC | 8 cut(s) | 103, 570, 857, 1147, 1444, 2454, 2463, 2625 |
| HapII | CCGG | 2 cut(s) | 1445, 2512 |
| HhaI | GCGC | 3 cut(s) | 98, 1014, 2430 |
| Hin6I | GCGC | 3 cut(s) | 96, 1012, 2428 |
| HinP1I | GCGC | 3 cut(s) | 96, 1012, 2428 |
| HincII | GTYRAC | 2 cut(s) | 2128, 2702 |
| HindII | GTYRAC | 2 cut(s) | 2128, 2702 |
| HindIII | AAGCTT | 1 cut(s) | 2657 |
| HpaII | CCGG | 2 cut(s) | 1445, 2512 |
| HphI | GGTGA | 4 cut(s) | 32, 650, 1196, 2519 |
| Hpy99I | CGWCG | 2 cut(s) | 948, 2543 |
| HpyAV | CCTTC | 7 cut(s) | 47, 1015, 1423, 1785, 2353, 2453, 2615 |
| HpyCH4III | ACNGT | 7 cut(s) | 161, 715, 1375, 1401, 1557, 2010, 2025 |
| HpyCH4IV | ACGT | 2 cut(s) | 2694, 2709 |
| HpySE526I | ACGT | 2 cut(s) | 2694, 2709 |
| HspAI | GCGC | 3 cut(s) | 96, 1012, 2428 |
| KroI | GCCGGC | 1 cut(s) | 1444 |
| KroNI | GCCGGC | 1 cut(s) | 1446 |
| Ksp22I | TGATCA | 1 cut(s) | 1582 |
| Kzo9I | GATC | 8 cut(s) | 526, 1234, 1582, 1698, 1907, 1947, 2098, 2483 |
| LmnI | GCTCC | 6 cut(s) | 603, 1207, 1221, 1531, 1880, 1976 |
| LweI | GCATC | 9 cut(s) | 185, 187, 592, 903, 1275, 1291, 1766, 1892, 2744 |
| MaeI | CTAG | 3 cut(s) | 423, 828, 1062 |
| MaeII | ACGT | 2 cut(s) | 2694, 2709 |
| MaeIII | GTNAC | 9 cut(s) | 155, 256, 675, 1273, 1565, 1935, 2228, 2388, 2507 |
| MalI | GATC | 8 cut(s) | 528, 1236, 1584, 1700, 1909, 1949, 2100, 2485 |
| MboI | GATC | 8 cut(s) | 526, 1234, 1582, 1698, 1907, 1947, 2098, 2483 |
| MfeI | CAATTG | 1 cut(s) | 2629 |
| MflI | RGATCY | 3 cut(s) | 526, 1698, 1907 |
| MhlI | GDGCHC | 5 cut(s) | 105, 1176, 2043, 2439, 2747 |
| MlsI | TGGCCA | 2 cut(s) | 857, 1147 |
| MluNI | TGGCCA | 2 cut(s) | 857, 1147 |
| MlyI | GAGTC | 3 cut(s) | 941, 1531, 2707 |
| MmeI | TCCRAC | 6 cut(s) | 974, 1210, 1792, 1935, 2192, 2366 |
| Mox20I | TGGCCA | 2 cut(s) | 857, 1147 |
| Mph1103I | ATGCAT | 2 cut(s) | 94, 267 |
| MroNI | GCCGGC | 1 cut(s) | 1444 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2197 |
| MscI | TGGCCA | 2 cut(s) | 857, 1147 |
| MseI | TTAA | 6 cut(s) | 36, 317, 867, 1197, 1901, 2262 |
| MslI | CAYNNNNRTG | 3 cut(s) | 270, 537, 1210 |
| Msp20I | TGGCCA | 2 cut(s) | 857, 1147 |
| MspA1I | CMGCKG | 5 cut(s) | 247, 461, 1349, 1603, 1630 |
| MspCI | CTTAAG | 1 cut(s) | 1900 |
| MspI | CCGG | 2 cut(s) | 1445, 2512 |
| MspR9I | CCNGG | 6 cut(s) | 107, 854, 1282, 2000, 2064, 2513 |
| MunI | CAATTG | 1 cut(s) | 2629 |
| Mva1269I | GAATGC | 2 cut(s) | 1155, 2081 |
| MvaI | CCWGG | 5 cut(s) | 107, 854, 1282, 2000, 2064 |
| MvnI | CGCG | 1 cut(s) | 98 |
| NaeI | GCCGGC | 1 cut(s) | 1446 |
| NciI | CCSGG | 1 cut(s) | 2513 |
| NcoI | CCATGG | 1 cut(s) | 1142 |
| NdeII | GATC | 8 cut(s) | 526, 1234, 1582, 1698, 1907, 1947, 2098, 2483 |
| NgoMIV | GCCGGC | 1 cut(s) | 1444 |
| NlaIV | GGNNCC | 8 cut(s) | 102, 103, 104, 1217, 1864, 1909, 2377, 2475 |
| NmeAIII | GCCGAG | 1 cut(s) | 1317 |
| NmuCI | GTSAC | 4 cut(s) | 155, 256, 2388, 2507 |
| NsbI | TGCGCA | 1 cut(s) | 2429 |
| NsiI | ATGCAT | 2 cut(s) | 94, 267 |
| NspI | RCATGY | 5 cut(s) | 92, 96, 269, 751, 904 |
| OliI | CACNNNNGTG | 1 cut(s) | 1210 |
| PaeI | GCATGC | 5 cut(s) | 92, 96, 269, 751, 904 |
| PagI | TCATGA | 1 cut(s) | 532 |
| PaqCI | CACCTGC | 1 cut(s) | 2690 |
| PceI | AGGCCT | 1 cut(s) | 2625 |
| PctI | GAATGC | 2 cut(s) | 1155, 2081 |
| PdiI | GCCGGC | 1 cut(s) | 1446 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2197 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1342 |
| PleI | GAGTC | 3 cut(s) | 940, 1531, 2706 |
| PpsI | GAGTC | 3 cut(s) | 940, 1531, 2706 |
| Ppu21I | YACGTR | 1 cut(s) | 2695 |
| PpuMI | RGGWCCY | 2 cut(s) | 2376, 2473 |
| PshAI | GACNNNNGTC | 1 cut(s) | 10 |
| PsiI | TTATAA | 1 cut(s) | 816 |
| Psp124BI | GAGCTC | 2 cut(s) | 2043, 2439 |
| Psp5II | RGGWCCY | 2 cut(s) | 2376, 2473 |
| Psp6I | CCWGG | 5 cut(s) | 105, 852, 1280, 1998, 2062 |
| PspEI | GGTNACC | 1 cut(s) | 2507 |
| PspFI | CCCAGC | 2 cut(s) | 502, 1029 |
| PspGI | CCWGG | 5 cut(s) | 105, 852, 1280, 1998, 2062 |
| PspN4I | GGNNCC | 8 cut(s) | 102, 103, 104, 1217, 1864, 1909, 2377, 2475 |
| PspOMI | GGGCCC | 1 cut(s) | 101 |
| PspPI | GGNCC | 6 cut(s) | 101, 102, 1442, 2329, 2376, 2473 |
| PspPPI | RGGWCCY | 2 cut(s) | 2376, 2473 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1846, 1878 |
| PstI | CTGCAG | 3 cut(s) | 775, 1048, 1608 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1603, 1630 |
| PsuI | RGATCY | 3 cut(s) | 526, 1698, 1907 |
| PvuII | CAGCTG | 5 cut(s) | 247, 461, 1349, 1603, 1630 |
| RsaI | GTAC | 4 cut(s) | 958, 1992, 2075, 2095 |
| RsaNI | GTAC | 4 cut(s) | 957, 1991, 2074, 2094 |
| RseI | CAYNNNNRTG | 3 cut(s) | 270, 537, 1210 |
| SacI | GAGCTC | 2 cut(s) | 2043, 2439 |
| SalI | GTCGAC | 1 cut(s) | 2700 |
| SaqAI | TTAA | 6 cut(s) | 36, 317, 867, 1197, 1901, 2262 |
| Sau3AI | GATC | 8 cut(s) | 526, 1234, 1582, 1698, 1907, 1947, 2098, 2483 |
| Sau96I | GGNCC | 6 cut(s) | 101, 102, 1442, 2329, 2376, 2473 |
| ScaI | AGTACT | 1 cut(s) | 2075 |
| SchI | GAGTC | 3 cut(s) | 941, 1531, 2707 |
| ScrFI | CCNGG | 6 cut(s) | 107, 854, 1282, 2000, 2064, 2513 |
| SduI | GDGCHC | 5 cut(s) | 105, 1176, 2043, 2439, 2747 |
| SfaNI | GCATC | 9 cut(s) | 185, 187, 592, 903, 1275, 1291, 1766, 1892, 2744 |
| SfcI | CTRYAG | 4 cut(s) | 771, 1044, 1576, 1604 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 2460 |
| SinI | GGWCC | 3 cut(s) | 2329, 2376, 2473 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 270, 537, 1210 |
| SmlI | CTYRAG | 1 cut(s) | 1900 |
| SmoI | CTYRAG | 1 cut(s) | 1900 |
| SphI | GCATGC | 5 cut(s) | 92, 96, 269, 751, 904 |
| SseBI | AGGCCT | 1 cut(s) | 2625 |
| SsiI | CCGC | 9 cut(s) | 98, 323, 356, 451, 786, 1353, 1475, 2091, 2636 |
| SspI | AATATT | 2 cut(s) | 810, 2182 |
| SspMI | CTAG | 3 cut(s) | 423, 828, 1062 |
| SstI | GAGCTC | 2 cut(s) | 2043, 2439 |
| StuI | AGGCCT | 1 cut(s) | 2625 |
| StyD4I | CCNGG | 6 cut(s) | 105, 852, 1280, 1998, 2062, 2511 |
| StyI | CCWWGG | 6 cut(s) | 821, 1142, 1219, 2086, 2533, 2546 |
| TaaI | ACNGT | 7 cut(s) | 161, 715, 1375, 1401, 1557, 2010, 2025 |
| TaiI | ACGT | 2 cut(s) | 2697, 2712 |
| TaqI | TCGA | 4 cut(s) | 565, 946, 2347, 2701 |
| TatI | WGTACW | 2 cut(s) | 1990, 2073 |
| TauI | GCSGC | 3 cut(s) | 788, 1355, 2639 |
| Tru1I | TTAA | 6 cut(s) | 36, 317, 867, 1197, 1901, 2262 |
| Tru9I | TTAA | 6 cut(s) | 36, 317, 867, 1197, 1901, 2262 |
| TseFI | GTSAC | 4 cut(s) | 155, 256, 2388, 2507 |
| Tsp45I | GTSAC | 4 cut(s) | 155, 256, 2388, 2507 |
| TspDTI | ATGAA | 9 cut(s) | 6, 300, 521, 678, 1050, 1059, 1818, 2190, 2310 |
| TspGWI | ACGGA | 2 cut(s) | 932, 2046 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1342 |
| Vha464I | CTTAAG | 1 cut(s) | 1900 |
| VpaK11BI | GGWCC | 3 cut(s) | 2329, 2376, 2473 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 51, 2383 |
| XapI | RAATTY | 4 cut(s) | 73, 548, 1000, 2405 |
| XceI | RCATGY | 5 cut(s) | 92, 96, 269, 751, 904 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 190, 1226 |
| XmiI | GTMKAC | 5 cut(s) | 141, 342, 1318, 1332, 2701 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2197 |
| XspI | CTAG | 3 cut(s) | 423, 828, 1062 |
| ZrmI | AGTACT | 1 cut(s) | 2075 |
| Zsp2I | ATGCAT | 2 cut(s) | 94, 267 |