Rorug05G0022100

Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001354
Physical Location & Seq
Reverse (-)
1410742 .. 1414092
3351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0022100.1

Sequence Viewer

Length: 1386 bp
ATGGCTCTCTCTGCTGCTGCTGTTACTTCTTCTTCGTCTTCTACTGCAATCTCTGCTCGGACCTTCTCCTCTGACCTCAAAGCTCCGCAGCTAGGTTCATTTCGCGTGCCGAACCAGGCGGTGACGTTTTCGCAGAGATGGAGCGCGGTGAAGGCTGTGAATGCTCAGCCCAAGAGGAGCGATTCGATTGTGCCGCTTGCGGCCACGATTGTTGCGCCTGAGGAGGTTGAGAAAGTGGAGGTGGAGGACTGTGAGAAATTGGCTAAGGAGCTTGAGAGTGCTTCTCCTCTTGAGATCATGGACAAGGCTCTTGAGAAATTCGGCAACGACATTGCTATTGCCTTCAGTGGAGCTGAGGATGTTGCTTTGATTGAGTACGCACATTTGACCGGTAGACCCTACAGGGTGTTCAGTTTGGATACTGGGAGGCTGAACCCAGAAACATATCAGTTCTTTGACACAGTTGAGAAGCACTATGGTATCCACATTGAATACATGTTTCCTGATTCTGTTGAAGTTCAGGCATTAGTAAGGAGCAAAGGGCTTTTCTCTTTCTATGAGGATGGACACCAGGAATGCTGCCGTGTGAGAAAGGTGAGACCCCTCCGGAGAGCCCTCAAGGGTCTTCGTGCTTGGATCACTGGCCAAAGGAAAGATCAATCTCCAGGTACCAGGTCTGAAGTTCCTGTTGTCCAGGTTGACCCCGTTTTTGAGGGTTTGGATGGTGGAGCTGGCAGCCTGGTGAAGTGGAACCCAGTTGCTAATGTCGAGGGTGTTGATGTATGGAACTTCCTTCGTGCCATGAACGTGCCTGTGAATTCACTGCACTCCCAGGGATACATTTCAATTGGTTGTGAGCCATGCACAAGGTCAGTCCTACCGGGACAACATGAGAGAGAAGGAAGGTGGTGGTGGGAGGATGCCAAGGCAAAGGAGTGTGGTCTTCACAAAGGCAATCTCAAACAGGAAGATGGTCAAGCAAATGGCAATGGAAATGGAGCTGCCAATCCCAACGGAACAGCCACAGCTGACATTTTCACTTCCCAGAATTTGGTCACCTTAAGCAGGCCTGGAATAGAGAATTTGGCAAGACTTGAGAACCGGCAAGAACCTTGGATTGTAGTACTCTATGCGCCTTGGTGCCAATTCTGTCAGGCAATGGAAGCATCATACGATGAGTTGGCCAACAAGTTGGCAGGGAGTGGTGTGAAGGTAGGAAAGTTCAGAGCAGATGGTGAGCAAAAGGAGTATGCCCAGAAAGAACTTCAACTCGGAAGCTTCCCTACAGTACTTTTCTTCCCGAAACACTCTTCTCGGCCAATCAAGTACCCATCAGAGAAGAGGGATGTTGATTCGCTGATGGCTTTCATCAATGCCCTTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AUX_IAA Auxin_resp B3

Protein Analysis

461

Amino Acids

50.94

Weight (kDa)

6.14

Isoelectric Point (pI)

49.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAPS_reduct PF01507 111 - 290 2.2e-48 Phosphoadenosine phosphosulfate reductase domain
Thioredoxin PF00085 365 - 458 1.9e-11 Thioredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 668
AccB1I GGYRCC 2 cut(s) 668, 1140
AccB7I CCANNNNNTGG 1 cut(s) 1051
AccI GTMKAC 1 cut(s) 394
AccII CGCG 2 cut(s) 105, 146
AccIII TCCGGA 1 cut(s) 606
AciI CCGC 5 cut(s) 86, 119, 146, 194, 200
AclWI GGATC 1 cut(s) 644
AcoI YGGCCR 4 cut(s) 201, 643, 1182, 1316
AcsI RAATTY 4 cut(s) 317, 817, 1048, 1081
AcuI CTGAAG 2 cut(s) 328, 699
AfaI GTAC 5 cut(s) 377, 670, 1125, 1290, 1328
AfiI CCNNNNNNNGG 3 cut(s) 92, 1051, 1065
AflII CTTAAG 1 cut(s) 1060
AflIII ACRYGT 1 cut(s) 495
AgeI ACCGGT 1 cut(s) 389
AgsI TTSAA 4 cut(s) 491, 515, 846, 1268
AjnI CCWGG 8 cut(s) 114, 570, 664, 671, 693, 738, 831, 1069
AluBI AGCT 8 cut(s) 83, 91, 271, 353, 731, 1001, 1028, 1278
AluI AGCT 8 cut(s) 83, 91, 271, 353, 731, 1001, 1028, 1278
Alw26I GTCTC 1 cut(s) 592
AlwI GGATC 1 cut(s) 644
Aor13HI TCCGGA 1 cut(s) 606
AoxI GGCC 5 cut(s) 201, 643, 1067, 1182, 1316
ApeKI GCWGC 6 cut(s) 14, 17, 88, 579, 735, 1001
ApoI RAATTY 4 cut(s) 317, 817, 1048, 1081
ArsI GACNNNNNNTTYG 2 cut(s) 692, 724
AsiGI ACCGGT 1 cut(s) 389
Asp718I GGTACC 1 cut(s) 668
AspLEI GCGC 3 cut(s) 146, 217, 1135
AspS9I GGNCC 1 cut(s) 60
AsuC2I CCSGG 1 cut(s) 882
AsuHPI GGTGA 6 cut(s) 133, 160, 607, 754, 1048, 1247
AvaII GGWCC 1 cut(s) 60
AxyI CCTNAGG 1 cut(s) 219
BaeI ACNNNNGTAYC 2 cut(s) 463, 496
BalI TGGCCA 2 cut(s) 645, 1184
BanI GGYRCC 2 cut(s) 668, 1140
BanII GRGCYC 1 cut(s) 616
BarI GAAGNNNNNNTAC 2 cut(s) 1267, 1299
BbsI GAAGAC 3 cut(s) 30, 617, 935
BbvCI CCTCAGC 1 cut(s) 354
BbvI GCAGC 5 cut(s) 4, 100, 566, 747, 988
BccI CCATC 7 cut(s) 132, 557, 716, 965, 1226, 1339, 1354
BceAI ACGGC 1 cut(s) 567
BciT130I CCWGG 8 cut(s) 116, 572, 666, 673, 695, 740, 833, 1071
BciVI GTATCC 3 cut(s) 412, 491, 830
BcnI CCSGG 1 cut(s) 882
BcoDI GTCTC 1 cut(s) 592
BfaI CTAG 1 cut(s) 92
BfmI CTRYAG 2 cut(s) 400, 1284
BfrI CTTAAG 1 cut(s) 1060
BfuI GTATCC 3 cut(s) 412, 491, 830
BisI GCNGC 8 cut(s) 15, 18, 89, 194, 201, 580, 736, 1002
BlpI GCTNAGC 1 cut(s) 165
BlsI GCNGC 8 cut(s) 16, 19, 90, 195, 202, 581, 737, 1003
BmcAI AGTACT 2 cut(s) 1125, 1290
Bme1390I CCNGG 9 cut(s) 116, 572, 666, 673, 695, 740, 833, 882, 1071
Bme18I GGWCC 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 60
BmiI GGNNCC 3 cut(s) 670, 752, 1142
BmrFI CCNGG 9 cut(s) 116, 572, 666, 673, 695, 740, 833, 882, 1071
BmrI ACTGGG 2 cut(s) 432, 749
BmsI GCATC 2 cut(s) 910, 1175
BmuI ACTGGG 2 cut(s) 432, 749
BpiI GAAGAC 3 cut(s) 30, 617, 935
BplI GAGNNNNNCTC 2 cut(s) 268, 300
BpmI CTGGAG 1 cut(s) 648
Bpu10I CCTNAGC 2 cut(s) 264, 354
Bpu1102I GCTNAGC 1 cut(s) 165
BpuEI CTTGAG 5 cut(s) 293, 311, 332, 602, 1115
BpuMI CCSGG 1 cut(s) 882
BsaI GGTCTC 1 cut(s) 592
BsaJI CCNNGG 5 cut(s) 831, 832, 924, 1112, 1136
BsaWI WCCGGW 2 cut(s) 389, 606
Bsc4I CCNNNNNNNGG 3 cut(s) 92, 1051, 1065
Bse118I RCCGGY 2 cut(s) 389, 1101
Bse1I ACTGG 3 cut(s) 427, 646, 755
Bse21I CCTNAGG 1 cut(s) 219
Bse3DI GCAATG 3 cut(s) 330, 994, 1164
BseAI TCCGGA 1 cut(s) 606
BseBI CCWGG 8 cut(s) 116, 572, 666, 673, 695, 740, 833, 1071
BseDI CCNNGG 5 cut(s) 831, 832, 924, 1112, 1136
BseGI GGATG 5 cut(s) 364, 568, 727, 925, 1351
BseLI CCNNNNNNNGG 3 cut(s) 92, 1051, 1065
BseMI GCAATG 3 cut(s) 330, 994, 1164
BseMII CTCAG 3 cut(s) 179, 210, 345
BseNI ACTGG 3 cut(s) 427, 646, 755
BseRI GAGGAG 4 cut(s) 58, 190, 236, 276
BseXI GCAGC 5 cut(s) 4, 100, 566, 747, 988
BsgI GTGCAG 1 cut(s) 809
Bsh1236I CGCG 2 cut(s) 105, 146
BshFI GGCC 5 cut(s) 203, 645, 1069, 1184, 1318
BshNI GGYRCC 2 cut(s) 668, 1140
BshTI ACCGGT 1 cut(s) 389
BsiSI CCGG 4 cut(s) 390, 607, 881, 1102
BslFI GGGAC 1 cut(s) 897
BslI CCNNNNNNNGG 3 cut(s) 92, 1051, 1065
BsmAI GTCTC 1 cut(s) 592
BsmFI GGGAC 1 cut(s) 897
BsmI GAATGC 2 cut(s) 166, 581
BsnI GGCC 5 cut(s) 203, 645, 1069, 1184, 1318
Bso31I GGTCTC 1 cut(s) 592
Bsp1286I GDGCHC 1 cut(s) 616
Bsp13I TCCGGA 1 cut(s) 606
Bsp143I GATC 3 cut(s) 294, 636, 655
Bsp1720I GCTNAGC 1 cut(s) 165
BspACI CCGC 5 cut(s) 86, 119, 146, 194, 200
BspANI GGCC 5 cut(s) 203, 645, 1069, 1184, 1318
BspCNI CTCAG 3 cut(s) 178, 211, 346
BspEI TCCGGA 1 cut(s) 606
BspFNI CGCG 2 cut(s) 105, 146
BspLI GGNNCC 3 cut(s) 670, 752, 1142
BspPI GGATC 1 cut(s) 644
BspT107I GGYRCC 2 cut(s) 668, 1140
BspTI CTTAAG 1 cut(s) 1060
BspTNI GGTCTC 1 cut(s) 592
BsrDI GCAATG 3 cut(s) 330, 994, 1164
BsrFI RCCGGY 2 cut(s) 389, 1101
BsrI ACTGG 3 cut(s) 427, 646, 755
BssAI RCCGGY 2 cut(s) 389, 1101
BssECI CCNNGG 5 cut(s) 831, 832, 924, 1112, 1136
BssMI GATC 3 cut(s) 294, 636, 655
BssT1I CCWWGG 3 cut(s) 924, 1112, 1136
Bst2UI CCWGG 8 cut(s) 116, 572, 666, 673, 695, 740, 833, 1071
Bst4CI ACNGT 3 cut(s) 251, 463, 1288
Bst6I CTCTTC 2 cut(s) 1315, 1334
BstAFI CTTAAG 1 cut(s) 1060
BstAPI GCANNNNNTGC 1 cut(s) 53
BstC8I GCNNGC 4 cut(s) 107, 198, 733, 1067
BstDEI CTNAG 4 cut(s) 165, 219, 264, 354
BstEII GGTNACC 1 cut(s) 1054
BstENI CCTNNNNNAGG 1 cut(s) 1063
BstF5I GGATG 5 cut(s) 364, 568, 727, 925, 1351
BstFNI CGCG 2 cut(s) 105, 146
BstHHI GCGC 3 cut(s) 146, 217, 1135
BstKTI GATC 3 cut(s) 297, 639, 658
BstMAI GTCTC 1 cut(s) 592
BstMBI GATC 3 cut(s) 294, 636, 655
BstMWI GCNNNNNNNGC 5 cut(s) 11, 53, 152, 161, 1163
BstNI CCWGG 8 cut(s) 116, 572, 666, 673, 695, 740, 833, 1071
BstNSI RCATGY 1 cut(s) 499
BstPI GGTNACC 1 cut(s) 1054
BstSCI CCNGG 9 cut(s) 114, 570, 664, 671, 693, 738, 831, 880, 1069
BstSFI CTRYAG 2 cut(s) 400, 1284
BstUI CGCG 2 cut(s) 105, 146
BstV1I GCAGC 5 cut(s) 4, 100, 566, 747, 988
BstV2I GAAGAC 3 cut(s) 30, 617, 935
BstXI CCANNNNNNTGG 1 cut(s) 1192
Bsu36I CCTNAGG 1 cut(s) 219
BsuI GTATCC 3 cut(s) 412, 491, 830
BsuRI GGCC 5 cut(s) 203, 645, 1069, 1184, 1318
BtsCI GGATG 5 cut(s) 364, 568, 727, 925, 1351
BtsI GCAGTG 1 cut(s) 821
BtsIMutI CAGTG 3 cut(s) 352, 639, 821
Cac8I GCNNGC 4 cut(s) 107, 198, 733, 1067
CfoI GCGC 3 cut(s) 146, 217, 1135
Cfr10I RCCGGY 2 cut(s) 389, 1101
Cfr13I GGNCC 1 cut(s) 60
CsiI ACCWGGT 1 cut(s) 671
Csp6I GTAC 5 cut(s) 376, 669, 1124, 1289, 1327
CspAI ACCGGT 1 cut(s) 389
CspCI CAANNNNNGTGG 2 cut(s) 193, 228
CviAII CATG 5 cut(s) 298, 496, 802, 861, 890
CviQI GTAC 5 cut(s) 376, 669, 1124, 1289, 1327
DdeI CTNAG 4 cut(s) 165, 219, 264, 354
DpnI GATC 3 cut(s) 296, 638, 657
DpnII GATC 3 cut(s) 294, 636, 655
EaeI YGGCCR 4 cut(s) 201, 643, 1182, 1316
Eam1104I CTCTTC 2 cut(s) 1315, 1334
EarI CTCTTC 2 cut(s) 1315, 1334
Eco130I CCWWGG 3 cut(s) 924, 1112, 1136
Eco147I AGGCCT 1 cut(s) 1069
Eco24I GRGCYC 1 cut(s) 616
Eco31I GGTCTC 1 cut(s) 592
Eco47I GGWCC 1 cut(s) 60
Eco57I CTGAAG 2 cut(s) 328, 699
Eco81I CCTNAGG 1 cut(s) 219
Eco91I GGTNACC 1 cut(s) 1054
EcoNI CCTNNNNNAGG 1 cut(s) 1063
EcoO65I GGTNACC 1 cut(s) 1054
EcoRI GAATTC 1 cut(s) 817
EcoRII CCWGG 8 cut(s) 114, 570, 664, 671, 693, 738, 831, 1069
EcoT14I CCWWGG 3 cut(s) 924, 1112, 1136
EcoT38I GRGCYC 1 cut(s) 616
ErhI CCWWGG 3 cut(s) 924, 1112, 1136
FaeI CATG 5 cut(s) 301, 499, 805, 864, 893
FaqI GGGAC 1 cut(s) 897
FatI CATG 5 cut(s) 297, 495, 801, 860, 889
FblI GTMKAC 1 cut(s) 394
Fnu4HI GCNGC 8 cut(s) 15, 18, 89, 194, 201, 580, 736, 1002
FokI GGATG 5 cut(s) 371, 575, 734, 932, 1358
FriOI GRGCYC 1 cut(s) 616
Fsp4HI GCNGC 8 cut(s) 15, 18, 89, 194, 201, 580, 736, 1002
FspBI CTAG 1 cut(s) 92
GlaI GCGC 3 cut(s) 145, 216, 1134
GluI GCNGC 8 cut(s) 15, 18, 89, 194, 201, 580, 736, 1002
GsuI CTGGAG 1 cut(s) 648
HaeIII GGCC 5 cut(s) 203, 645, 1069, 1184, 1318
HapII CCGG 4 cut(s) 390, 607, 881, 1102
HhaI GCGC 3 cut(s) 146, 217, 1135
Hin1II CATG 5 cut(s) 301, 499, 805, 864, 893
Hin6I GCGC 3 cut(s) 144, 215, 1133
HinP1I GCGC 3 cut(s) 144, 215, 1133
HincII GTYRAC 1 cut(s) 700
HindII GTYRAC 1 cut(s) 700
HindIII AAGCTT 1 cut(s) 1276
HinfI GANTC 3 cut(s) 182, 506, 1352
HpaII CCGG 4 cut(s) 390, 607, 881, 1102
HphI GGTGA 6 cut(s) 133, 160, 607, 754, 1048, 1247
Hpy166II GTNNAC 2 cut(s) 395, 700
Hpy188I TCNGA 6 cut(s) 60, 73, 679, 1226, 1274, 1336
Hpy188III TCNNGA 5 cut(s) 290, 311, 503, 607, 1300
Hpy8I GTNNAC 2 cut(s) 395, 700
HpyAV CCTTC 7 cut(s) 73, 145, 352, 803, 893, 897, 1204
HpyCH4III ACNGT 3 cut(s) 251, 463, 1288
HpyCH4IV ACGT 2 cut(s) 125, 807
HpyCH4V TGCA 3 cut(s) 47, 826, 864
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 53, 152, 161, 1163
HpyF3I CTNAG 4 cut(s) 165, 219, 264, 354
HpySE526I ACGT 2 cut(s) 125, 807
Hsp92II CATG 5 cut(s) 301, 499, 805, 864, 893
HspAI GCGC 3 cut(s) 144, 215, 1133
Kpn2I TCCGGA 1 cut(s) 606
KpnI GGTACC 1 cut(s) 672
Kzo9I GATC 3 cut(s) 294, 636, 655
LmnI GCTCC 8 cut(s) 88, 141, 177, 268, 350, 534, 728, 998
Lsp1109I GCAGC 5 cut(s) 4, 100, 566, 747, 988
LweI GCATC 2 cut(s) 910, 1175
MabI ACCWGGT 1 cut(s) 671
MaeI CTAG 1 cut(s) 92
MaeII ACGT 2 cut(s) 125, 807
MaeIII GTNAC 3 cut(s) 22, 121, 1054
MalI GATC 3 cut(s) 296, 638, 657
MboI GATC 3 cut(s) 294, 636, 655
MboII GAAGA 9 cut(s) 21, 24, 30, 617, 935, 980, 1288, 1302, 1351
MfeI CAATTG 1 cut(s) 846
MhlI GDGCHC 1 cut(s) 616
MlsI TGGCCA 2 cut(s) 645, 1184
MluCI AATT 7 cut(s) 257, 317, 817, 846, 1048, 1081, 1145
MluNI TGGCCA 2 cut(s) 645, 1184
Mox20I TGGCCA 2 cut(s) 645, 1184
MroI TCCGGA 1 cut(s) 606
MscI TGGCCA 2 cut(s) 645, 1184
MseI TTAA 1 cut(s) 1061
MslI CAYNNNNRTG 1 cut(s) 806
Msp20I TGGCCA 2 cut(s) 645, 1184
MspA1I CMGCKG 1 cut(s) 1028
MspCI CTTAAG 1 cut(s) 1060
MspI CCGG 4 cut(s) 390, 607, 881, 1102
MspR9I CCNGG 9 cut(s) 116, 572, 666, 673, 695, 740, 833, 882, 1071
MunI CAATTG 1 cut(s) 846
Mva1269I GAATGC 2 cut(s) 166, 581
MvaI CCWGG 8 cut(s) 116, 572, 666, 673, 695, 740, 833, 1071
MvnI CGCG 2 cut(s) 105, 146
MwoI GCNNNNNNNGC 5 cut(s) 11, 53, 152, 161, 1163
NciI CCSGG 1 cut(s) 882
NdeII GATC 3 cut(s) 294, 636, 655
NlaIII CATG 5 cut(s) 301, 499, 805, 864, 893
NlaIV GGNNCC 3 cut(s) 670, 752, 1142
NmeAIII GCCGAG 1 cut(s) 1294
NmuCI GTSAC 2 cut(s) 121, 1054
NspI RCATGY 1 cut(s) 499
PasI CCCWGGG 1 cut(s) 832
PceI AGGCCT 1 cut(s) 1069
PciI ACATGT 1 cut(s) 495
PctI GAATGC 2 cut(s) 166, 581
PfeI GAWTC 3 cut(s) 182, 506, 1352
PflMI CCANNNNNTGG 1 cut(s) 1051
PinAI ACCGGT 1 cut(s) 389
PkrI GCNGC 8 cut(s) 16, 19, 90, 195, 202, 581, 737, 1003
PscI ACATGT 1 cut(s) 495
Psp6I CCWGG 8 cut(s) 114, 570, 664, 671, 693, 738, 831, 1069
PspEI GGTNACC 1 cut(s) 1054
PspGI CCWGG 8 cut(s) 114, 570, 664, 671, 693, 738, 831, 1069
PspN4I GGNNCC 3 cut(s) 670, 752, 1142
PspPI GGNCC 1 cut(s) 60
PvuII CAGCTG 1 cut(s) 1028
RsaI GTAC 5 cut(s) 377, 670, 1125, 1290, 1328
RsaNI GTAC 5 cut(s) 376, 669, 1124, 1289, 1327
RseI CAYNNNNRTG 1 cut(s) 806
SaqAI TTAA 1 cut(s) 1061
SatI GCNGC 8 cut(s) 15, 18, 89, 194, 201, 580, 736, 1002
Sau3AI GATC 3 cut(s) 294, 636, 655
Sau96I GGNCC 1 cut(s) 60
ScaI AGTACT 2 cut(s) 1125, 1290
ScrFI CCNGG 9 cut(s) 116, 572, 666, 673, 695, 740, 833, 882, 1071
SduI GDGCHC 1 cut(s) 616
SexAI ACCWGGT 1 cut(s) 671
SfaNI GCATC 2 cut(s) 910, 1175
SfcI CTRYAG 2 cut(s) 400, 1284
SinI GGWCC 1 cut(s) 60
SmiMI CAYNNNNRTG 1 cut(s) 806
SmlI CTYRAG 6 cut(s) 272, 290, 311, 617, 1060, 1094
SmoI CTYRAG 6 cut(s) 272, 290, 311, 617, 1060, 1094
Sse9I AATT 7 cut(s) 257, 317, 817, 846, 1048, 1081, 1145
SseBI AGGCCT 1 cut(s) 1069
SsiI CCGC 5 cut(s) 86, 119, 146, 194, 200
SspMI CTAG 1 cut(s) 92
StuI AGGCCT 1 cut(s) 1069
StyD4I CCNGG 9 cut(s) 114, 570, 664, 671, 693, 738, 831, 880, 1069
StyI CCWWGG 3 cut(s) 924, 1112, 1136
TaaI ACNGT 3 cut(s) 251, 463, 1288
TaiI ACGT 2 cut(s) 128, 810
TaqI TCGA 2 cut(s) 185, 768
TasI AATT 7 cut(s) 257, 317, 817, 846, 1048, 1081, 1145
TatI WGTACW 2 cut(s) 1123, 1288
TauI GCSGC 2 cut(s) 196, 203
TfiI GAWTC 3 cut(s) 182, 506, 1352
Tru1I TTAA 1 cut(s) 1061
Tru9I TTAA 1 cut(s) 1061
TscAI CASTG 3 cut(s) 352, 646, 828
TseFI GTSAC 2 cut(s) 121, 1054
TseI GCWGC 6 cut(s) 14, 17, 88, 579, 735, 1001
Tsp45I GTSAC 2 cut(s) 121, 1054
TspDTI ATGAA 3 cut(s) 87, 818, 1357
TspGWI ACGGA 1 cut(s) 1029
TspRI CASTG 3 cut(s) 352, 646, 828
Van91I CCANNNNNTGG 1 cut(s) 1051
Vha464I CTTAAG 1 cut(s) 1060
VpaK11BI GGWCC 1 cut(s) 60
XagI CCTNNNNNAGG 1 cut(s) 1063
XapI RAATTY 4 cut(s) 317, 817, 1048, 1081
XceI RCATGY 1 cut(s) 499
XmiI GTMKAC 1 cut(s) 394
XspI CTAG 1 cut(s) 92
ZrmI AGTACT 2 cut(s) 1125, 1290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.