RLG00000020659

Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
67224129 .. 67230492
6364 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020659

Sequence Viewer

Length: 2757 bp
ATGAGGCTTTCTTCTTCGTCTTCGTCTTCGGGGTTTAATAATCATCAGCCTCAGGAAGGGGAGAAGAAATGTTTGAATTCTGAGCTATGGCATGCGTGTGCGGGGCCTCTGGTGTCTCTGCCTGCTCTTGGTAGTCGCGTGGTCTACTTTCCGCAAGGTCACAGTGAGCAGGTTGCTGCATCAACCAATAAGGAAGTTGATGCCCATATTCCCAATTACCCAAACCTACCTCCACAACTAATTTGTCAACTTCACAATGTGACTATGCATGCTGATGTGGAGACGGATGAAGTATATGCTCAAATGACCCTGCAACCATTAAGTCCGCAAGAGCAAAAGGATGTATACCTAATGCCTGCAGAGTTGGGCAATCCCAGCAAACAGCCAACCAACTATTTCTGTAAAACTTTGACCGCAAGTGATACTAGCACGCATGGAGGATTTTCTGTTCCCCGCCGTGCAGCTGAAAAAGTCTTTCCTCCTCTTGATTACTCACAGCAGCCCCCAGCGCAGGAACTAATTGCAAGGGATCTTCATGATAATGAATGGAAATTCAGACATATATTTCGAGGCCAGCCCAAGAGGCATCTTCTCACAACAGGATGGAGCGTGTTCGTTAGTGCTAAACGACTTGTTGCCGGTGATTCTGTCCTTTTTATTTGGAATGAAAAGAATCAGTTGCTCTTGGGTATTCGGAGAGCAAATCGTCCGCAGACTGTTATGCCGTCGTCGGTTTTATCAAGCGATAGCATGCATATTGGTCTTCTTGCTGCTGCAGCTCATGCAGCTGCAACAAATAGTCGGTTTACTATATTTTATAATCCAAGAGCAAGTCCTTCTGAATTTGTGATACCCCTGGCCAAGTATGTTAAAGCTGTCTATCATACACGTGTTTCTGTGGGAATGCGATTTAGGATGCTGTTTGAGACAGAAGAATCAAGTGTTCGCCGATACATGGGTACAATAACTGGCATCAGTGATTTAGATTCTGTTCGCTGGTCAAATTCACACTGGCGCTCTGTGAAGGTTGGCTGGGATGAATCCACTGCAGGGGAGAGGCAGCCAAGAGTTTCATTGTGGGAGATTGAACCGCTAACAACTTTTCCCATGTACCCTTCCCCATTCCCTCTCAGACTGAAGCGACCATGGCCATCGGGCATGCCCTCTTTCCATGCGCTCAAAGACGGTGATATGGGCCTGAATGCGCCACTGATGTGGCTCCAAGGAGGGGTTGGAGATCCAGGGATGCAATCTTTGAACTTCCAGGGATTTGGGGTTACGCCCTGGATGCAGCCACGGCTTGATGCTTCTATGGCAGGTCTACAACCTGATGTATACCAAGCAATGGCAGCTGCTGCACTTCAAGAAATGAGGGCAGTGGATGCAAAATGTTCTTCGCAGTCGATTCTACCCTTCCAGCAATCTTCAAATGTTTCAAATGGGCCTGCTGCTATGCTTCAGAGACATAGTTTACCTCAGTCTCAGTCTCAGAATACTTTTCTCCAGAGCTTTCAAGAAAACCAAGCTCCTGCTTCTCAGCTGTTGCAACAACAGTTGCGTTATCATCCATATAATAATGATCAGAGGCAGCAGCAGCAGCATCATCAACAGCAGCTGCACCAGCACCAGCACCAGCAACAGCAGCAGCAGCAGCTTCAACAGCAGCATCTTCAACAATCCCAGAATATGCACCAATTTTCTGTTCAGCAGCAGATTCCAAATGTAATGTCTTCTCTATCTAATTTTGCTACTCAATCTCAGTCTGCATCACTACAAGCTATTCCTTCACAAACTCAGCAGCAGAGCTTTCCCGAATCTGTTGGAAATGCTATATCTTCATCCGATGTTCCCCCTATACACAGCATATTAGGTTCACTATCGCAGGATGGAGCATCCCAGTTACTTAACTTGAGTGGATCCAACACTGGCATATCTTCTACTTTGTTACCCAAGGTTGAATCACAGCTATCATCTGGGGCTGCTCAATGTGTACTCCCCCAAGTGGATCAGTTGGGAACACCACAGTCAAATATCTCTGAGCTCACTGCCTTGCCTCCATTTCCTGGCAGAGAGTACTCTTTCCAAGGTGCTACTGATCCCCAGAGCAATCTTTTGTTTGGGGTTAACATTGACGCCTCATCTCTAATGCTACAGAATGGGATACCAAATCTGAGAAATATTGGCAGTGGAACTGATTCATTGTCTATGCCGTTCGGTGCTTCAAATTATACCAGTGCAACAGGCAATGATTATCCACTTAATTCAGATATGACTACTTCAAGTTGTGTAGATGAATCAGGCTTCTTGCAGTCTTCAGAAAATGTGGACCAAGTAAATCCACCGACTCGAACCTTTGTGAAGGTTCATAAGTCAGGGTCCTTTGGGAGGTCACTGGATATTTCAAAATTCAGCAGCTACGATGAGCTGCGCAGTGAGCTCGGAAGCATGTTTGGCCTTGAAGGCCAATTAGAGGATCCTCAGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGACGACCCTTGGCAGGAGTTTGTGAACAATGTTTGGTATATCAAGATACTTTCTCCGCTTGAAGTGCAACAAATGGGAAAGGAAGGCCTCAATCGTGTGGCTTCTGTCCCAAGCCAAAAGCTTTCCAATGGCAGCAATACCTGTGATGACTTCGTGAGCCGACAGGACTTGAGAAACTCAAGCAATGGGATTGCATCGCTGGGCTCCCTTGACTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

919

Amino Acids

101.52

Weight (kDa)

6.0

Isoelectric Point (pI)

67.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 133 - 235 2.1e-22 B3 DNA binding domain
ARF_AD PF06507 282 - 365 1.8e-33 Auxin response factor ancillary domain
AUX_IAA PF02309 776 - 865 1.6e-06 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 819
Acc16I TGCGCA 1 cut(s) 2429
Acc36I ACCTGC 2 cut(s) 160, 1307
AccB7I CCANNNNNTGG 2 cut(s) 1345, 2063
AccI GTMKAC 4 cut(s) 144, 345, 1321, 1335
AccII CGCG 1 cut(s) 138
AciI CCGC 8 cut(s) 101, 152, 326, 414, 454, 710, 1091, 2594
AclWI GGATC 8 cut(s) 537, 1232, 1911, 1924, 2013, 2090, 2468, 2481
AcoI YGGCCR 2 cut(s) 858, 1148
AcsI RAATTY 5 cut(s) 76, 551, 842, 1003, 2405
AcuI CTGAAG 3 cut(s) 1157, 1442, 2298
AcvI CACGTG 1 cut(s) 890
AcyI GRCGYC 1 cut(s) 2133
AdeI CACNNNGTG 1 cut(s) 259
AfaI GTAC 4 cut(s) 961, 1112, 1992, 2075
AflIII ACRYGT 2 cut(s) 887, 889
AjnI CCWGG 5 cut(s) 855, 1240, 1263, 1283, 2062
AjuI GAANNNNNNNTTGG 2 cut(s) 1686, 1718
AleI CACNNNNGTG 1 cut(s) 1213
AloI GAACNNNNNNTCC 2 cut(s) 432, 464
Alw21I GWGCWC 2 cut(s) 2043, 2439
Alw26I GTCTC 6 cut(s) 120, 275, 920, 1456, 1485, 1491
AlwI GGATC 8 cut(s) 537, 1232, 1911, 1924, 2013, 2090, 2468, 2481
AlwNI CAGNNNCTG 2 cut(s) 1355, 1615
AoxI GGCC 9 cut(s) 104, 571, 858, 1148, 1195, 1442, 2452, 2461, 2623
ApoI RAATTY 5 cut(s) 76, 551, 842, 1003, 2405
ArsI GACNNNNNNTTYG 4 cut(s) 549, 581, 1712, 1744
Asp700I GAANNNNTTC 1 cut(s) 2194
AspLEI GCGC 5 cut(s) 511, 1017, 1177, 1207, 2430
AspS9I GGNCC 5 cut(s) 104, 1195, 1442, 2326, 2376
AsuC2I CCSGG 1 cut(s) 2513
AsuHPI GGTGA 3 cut(s) 653, 1199, 2549
AvaII GGWCC 2 cut(s) 2326, 2376
AxyI CCTNAGG 1 cut(s) 51
BaeI ACNNNNGTAYC 2 cut(s) 943, 976
BalI TGGCCA 2 cut(s) 860, 1150
BamHI GGATCC 2 cut(s) 1916, 2473
BanII GRGCYC 3 cut(s) 2043, 2439, 2744
BbrPI CACGTG 1 cut(s) 890
BbsI GAAGAC 5 cut(s) 12, 18, 755, 1722, 2304
Bbv12I GWGCWC 2 cut(s) 2043, 2439
BccI CCATC 3 cut(s) 597, 1159, 1880
BceAI ACGGC 4 cut(s) 441, 709, 1313, 2194
BcgI CGANNNNNNTGC 2 cut(s) 2419, 2453
BciT130I CCWGG 5 cut(s) 857, 1242, 1265, 1285, 2064
BciVI GTATCC 1 cut(s) 2154
BclI TGATCA 1 cut(s) 1579
BcnI CCSGG 1 cut(s) 2513
BcoDI GTCTC 6 cut(s) 120, 275, 920, 1456, 1485, 1491
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 4 cut(s) 357, 774, 1047, 2150
BfoI RGCGCY 1 cut(s) 1018
BfuAI ACCTGC 2 cut(s) 160, 1307
BfuI GTATCC 1 cut(s) 2154
BglI GCCNNNNNGGC 2 cut(s) 583, 2460
BmcAI AGTACT 1 cut(s) 2075
Bme1390I CCNGG 6 cut(s) 857, 1242, 1265, 1285, 2064, 2513
Bme18I GGWCC 2 cut(s) 2326, 2376
BmgT120I GGNCC 5 cut(s) 104, 1195, 1442, 2326, 2376
BmiI GGNNCC 6 cut(s) 105, 1220, 1918, 2377, 2475, 2743
BmrFI CCNGG 6 cut(s) 857, 1242, 1265, 1285, 2064, 2513
BmrI ACTGGG 1 cut(s) 1891
BmuI ACTGGG 1 cut(s) 1891
BpiI GAAGAC 5 cut(s) 12, 18, 755, 1722, 2304
BpmI CTGGAG 1 cut(s) 1487
BpuEI CTTGAG 3 cut(s) 1930, 2701, 2728
BpuMI CCSGG 1 cut(s) 2513
BsaAI YACGTR 1 cut(s) 890
BsaHI GRCGYC 1 cut(s) 2133
Bse118I RCCGGY 1 cut(s) 638
Bse1I ACTGG 6 cut(s) 973, 1016, 1897, 1930, 2232, 2397
Bse21I CCTNAGG 1 cut(s) 51
Bse3DI GCAATG 3 cut(s) 1350, 2251, 2728
BseBI CCWGG 5 cut(s) 857, 1242, 1265, 1285, 2064
BseMI GCAATG 3 cut(s) 1350, 2251, 2728
BseNI ACTGG 6 cut(s) 973, 1016, 1897, 1930, 2232, 2397
BseRI GAGGAG 1 cut(s) 471
BseYI CCCAGC 4 cut(s) 374, 505, 1032, 2737
BsgI GTGCAG 3 cut(s) 480, 1341, 1601
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 9 cut(s) 106, 573, 860, 1150, 1197, 1444, 2454, 2463, 2625
BsiHKAI GWGCWC 2 cut(s) 2043, 2439
BsiSI CCGG 2 cut(s) 639, 2512
BslFI GGGAC 1 cut(s) 2630
BsmAI GTCTC 6 cut(s) 120, 275, 920, 1456, 1485, 1491
BsmBI CGTCTC 1 cut(s) 275
BsmFI GGGAC 1 cut(s) 2630
BsmI GAATGC 2 cut(s) 909, 1207
BsnI GGCC 9 cut(s) 106, 573, 860, 1150, 1197, 1444, 2454, 2463, 2625
Bsp1286I GDGCHC 3 cut(s) 2043, 2439, 2744
Bsp143I GATC 8 cut(s) 529, 1237, 1579, 1916, 2005, 2095, 2473, 2483
Bsp19I CCATGG 1 cut(s) 1145
BspACI CCGC 8 cut(s) 101, 152, 326, 414, 454, 710, 1091, 2594
BspANI GGCC 9 cut(s) 106, 573, 860, 1150, 1197, 1444, 2454, 2463, 2625
BspFNI CGCG 1 cut(s) 138
BspHI TCATGA 1 cut(s) 535
BspLI GGNNCC 6 cut(s) 105, 1220, 1918, 2377, 2475, 2743
BspMAI CTGCAG 3 cut(s) 361, 778, 1051
BspMI ACCTGC 2 cut(s) 160, 1307
BspPI GGATC 8 cut(s) 537, 1232, 1911, 1924, 2013, 2090, 2468, 2481
BsrDI GCAATG 3 cut(s) 1350, 2251, 2728
BsrFI RCCGGY 1 cut(s) 638
BsrI ACTGG 6 cut(s) 973, 1016, 1897, 1930, 2232, 2397
BssAI RCCGGY 1 cut(s) 638
BssMI GATC 8 cut(s) 529, 1237, 1579, 1916, 2005, 2095, 2473, 2483
BssNAI GTATAC 2 cut(s) 346, 1336
BssNI GRCGYC 1 cut(s) 2133
BssT1I CCWWGG 6 cut(s) 1145, 1222, 1950, 2083, 2533, 2546
Bst1107I GTATAC 2 cut(s) 346, 1336
Bst2UI CCWGG 5 cut(s) 857, 1242, 1265, 1285, 2064
Bst4CI ACNGT 5 cut(s) 164, 718, 1187, 1554, 2025
BstACI GRCGYC 1 cut(s) 2133
BstAPI GCANNNNNTGC 3 cut(s) 782, 1355, 1382
BstBAI YACGTR 1 cut(s) 890
BstDSI CCRYGG 2 cut(s) 1145, 1295
BstENI CCTNNNNNAGG 2 cut(s) 54, 2383
BstFNI CGCG 1 cut(s) 138
BstH2I RGCGCY 1 cut(s) 1018
BstHHI GCGC 5 cut(s) 511, 1017, 1177, 1207, 2430
BstKTI GATC 8 cut(s) 532, 1240, 1582, 1919, 2008, 2098, 2476, 2486
BstMAI GTCTC 6 cut(s) 120, 275, 920, 1456, 1485, 1491
BstMBI GATC 8 cut(s) 529, 1237, 1579, 1916, 2005, 2095, 2473, 2483
BstNI CCWGG 5 cut(s) 857, 1242, 1265, 1285, 2064
BstNSI RCATGY 5 cut(s) 95, 272, 754, 1162, 2449
BstSCI CCNGG 6 cut(s) 855, 1240, 1263, 1283, 2062, 2511
BstSFI CTRYAG 4 cut(s) 357, 774, 1047, 2150
BstUI CGCG 1 cut(s) 138
BstV2I GAAGAC 5 cut(s) 12, 18, 755, 1722, 2304
BstX2I RGATCY 4 cut(s) 529, 1237, 1916, 2473
BstXI CCANNNNNNTGG 2 cut(s) 1215, 1271
BstYI RGATCY 4 cut(s) 529, 1237, 1916, 2473
BstZ17I GTATAC 2 cut(s) 346, 1336
Bsu36I CCTNAGG 1 cut(s) 51
BsuI GTATCC 1 cut(s) 2154
BsuRI GGCC 9 cut(s) 106, 573, 860, 1150, 1197, 1444, 2454, 2463, 2625
BtgI CCRYGG 2 cut(s) 1145, 1295
BtgZI GCGATG 1 cut(s) 2718
BtsI GCAGTG 5 cut(s) 1044, 1383, 2043, 2191, 2437
BveI ACCTGC 2 cut(s) 160, 1307
CaiI CAGNNNCTG 2 cut(s) 1355, 1615
CciI TCATGA 1 cut(s) 535
CfoI GCGC 5 cut(s) 511, 1017, 1177, 1207, 2430
Cfr10I RCCGGY 1 cut(s) 638
Cfr13I GGNCC 5 cut(s) 104, 1195, 1442, 2326, 2376
CseI GACGC 1 cut(s) 2141
Csp6I GTAC 4 cut(s) 960, 1111, 1991, 2074
CviQI GTAC 4 cut(s) 960, 1111, 1991, 2074
DpnI GATC 8 cut(s) 531, 1239, 1581, 1918, 2007, 2097, 2475, 2485
DpnII GATC 8 cut(s) 529, 1237, 1579, 1916, 2005, 2095, 2473, 2483
DraIII CACNNNGTG 1 cut(s) 259
EaeI YGGCCR 2 cut(s) 858, 1148
Ecl136II GAGCTC 2 cut(s) 2041, 2437
Eco130I CCWWGG 6 cut(s) 1145, 1222, 1950, 2083, 2533, 2546
Eco147I AGGCCT 1 cut(s) 2625
Eco24I GRGCYC 3 cut(s) 2043, 2439, 2744
Eco47I GGWCC 2 cut(s) 2326, 2376
Eco53kI GAGCTC 2 cut(s) 2041, 2437
Eco57I CTGAAG 3 cut(s) 1157, 1442, 2298
Eco72I CACGTG 1 cut(s) 890
Eco81I CCTNAGG 1 cut(s) 51
EcoICRI GAGCTC 2 cut(s) 2041, 2437
EcoNI CCTNNNNNAGG 2 cut(s) 54, 2383
EcoO109I RGGNCCY 2 cut(s) 104, 2376
EcoRI GAATTC 1 cut(s) 76
EcoRII CCWGG 5 cut(s) 855, 1240, 1263, 1283, 2062
EcoT14I CCWWGG 6 cut(s) 1145, 1222, 1950, 2083, 2533, 2546
EcoT22I ATGCAT 2 cut(s) 270, 756
EcoT38I GRGCYC 3 cut(s) 2043, 2439, 2744
ErhI CCWWGG 6 cut(s) 1145, 1222, 1950, 2083, 2533, 2546
Esp3I CGTCTC 1 cut(s) 275
FaqI GGGAC 1 cut(s) 2630
FauI CCCGC 2 cut(s) 94, 461
FbaI TGATCA 1 cut(s) 1579
FblI GTMKAC 4 cut(s) 144, 345, 1321, 1335
FriOI GRGCYC 3 cut(s) 2043, 2439, 2744
FspBI CTAG 1 cut(s) 426
FspI TGCGCA 1 cut(s) 2429
GlaI GCGC 5 cut(s) 510, 1016, 1176, 1206, 2429
GsaI CCCAGC 4 cut(s) 378, 509, 1036, 2741
GsuI CTGGAG 1 cut(s) 1487
HaeII RGCGCY 1 cut(s) 1018
HaeIII GGCC 9 cut(s) 106, 573, 860, 1150, 1197, 1444, 2454, 2463, 2625
HapII CCGG 2 cut(s) 639, 2512
HgaI GACGC 1 cut(s) 2141
HhaI GCGC 5 cut(s) 511, 1017, 1177, 1207, 2430
Hin1I GRCGYC 1 cut(s) 2133
Hin6I GCGC 5 cut(s) 509, 1015, 1175, 1205, 2428
HinP1I GCGC 5 cut(s) 509, 1015, 1175, 1205, 2428
HincII GTYRAC 3 cut(s) 248, 2125, 2509
HindII GTYRAC 3 cut(s) 248, 2125, 2509
HindIII AAGCTT 1 cut(s) 2657
HpaI GTTAAC 1 cut(s) 2125
HpaII CCGG 2 cut(s) 639, 2512
HphI GGTGA 3 cut(s) 653, 1199, 2549
Hpy188III TCNNGA 9 cut(s) 53, 485, 536, 1364, 1504, 1514, 1811, 2581, 2692
Hpy99I CGWCG 2 cut(s) 730, 733
HpyAV CCTTC 9 cut(s) 50, 846, 1018, 1125, 1423, 1794, 2353, 2453, 2615
HpyCH4III ACNGT 5 cut(s) 164, 718, 1187, 1554, 2025
HpyCH4IV ACGT 1 cut(s) 889
HpySE526I ACGT 1 cut(s) 889
Hsp92I GRCGYC 1 cut(s) 2133
HspAI GCGC 5 cut(s) 509, 1015, 1175, 1205, 2428
Ksp22I TGATCA 1 cut(s) 1579
KspAI GTTAAC 1 cut(s) 2125
Kzo9I GATC 8 cut(s) 529, 1237, 1579, 1916, 2005, 2095, 2473, 2483
LmnI GCTCC 5 cut(s) 606, 1224, 1531, 1889, 2747
MaeI CTAG 1 cut(s) 426
MaeII ACGT 1 cut(s) 889
MaeIII GTNAC 7 cut(s) 158, 259, 1276, 1899, 1944, 2388, 2537
MalI GATC 8 cut(s) 531, 1239, 1581, 1918, 2007, 2097, 2475, 2485
MboI GATC 8 cut(s) 529, 1237, 1579, 1916, 2005, 2095, 2473, 2483
MflI RGATCY 4 cut(s) 529, 1237, 1916, 2473
MhlI GDGCHC 3 cut(s) 2043, 2439, 2744
MlsI TGGCCA 2 cut(s) 860, 1150
MluNI TGGCCA 2 cut(s) 860, 1150
MlyI GAGTC 1 cut(s) 2338
MmeI TCCRAC 3 cut(s) 1213, 1801, 1944
Mox20I TGGCCA 2 cut(s) 860, 1150
Mph1103I ATGCAT 2 cut(s) 270, 756
MroXI GAANNNNTTC 1 cut(s) 2194
MscI TGGCCA 2 cut(s) 860, 1150
MseI TTAA 6 cut(s) 36, 320, 870, 1905, 2124, 2259
MslI CAYNNNNRTG 5 cut(s) 96, 273, 540, 888, 1213
Msp20I TGGCCA 2 cut(s) 860, 1150
MspA1I CMGCKG 5 cut(s) 464, 788, 1352, 1540, 1615
MspI CCGG 2 cut(s) 639, 2512
MspR9I CCNGG 6 cut(s) 857, 1242, 1265, 1285, 2064, 2513
Mva1269I GAATGC 2 cut(s) 909, 1207
MvaI CCWGG 5 cut(s) 857, 1242, 1265, 1285, 2064
MvnI CGCG 1 cut(s) 138
NciI CCSGG 1 cut(s) 2513
NcoI CCATGG 1 cut(s) 1145
NdeII GATC 8 cut(s) 529, 1237, 1579, 1916, 2005, 2095, 2473, 2483
NlaIV GGNNCC 6 cut(s) 105, 1220, 1918, 2377, 2475, 2743
NmuCI GTSAC 4 cut(s) 158, 259, 2388, 2537
NsbI TGCGCA 1 cut(s) 2429
NsiI ATGCAT 2 cut(s) 270, 756
NspI RCATGY 5 cut(s) 95, 272, 754, 1162, 2449
OliI CACNNNNGTG 1 cut(s) 1213
PaeI GCATGC 4 cut(s) 95, 272, 754, 1162
PagI TCATGA 1 cut(s) 535
PceI AGGCCT 1 cut(s) 2625
PctI GAATGC 2 cut(s) 909, 1207
PdmI GAANNNNTTC 1 cut(s) 2194
PflMI CCANNNNNTGG 2 cut(s) 1345, 2063
PleI GAGTC 1 cut(s) 2338
PmaCI CACGTG 1 cut(s) 890
PmlI CACGTG 1 cut(s) 890
PpsI GAGTC 1 cut(s) 2338
Ppu21I YACGTR 1 cut(s) 890
PpuMI RGGWCCY 1 cut(s) 2376
PsiI TTATAA 1 cut(s) 819
Psp124BI GAGCTC 2 cut(s) 2043, 2439
Psp5II RGGWCCY 1 cut(s) 2376
Psp6I CCWGG 5 cut(s) 855, 1240, 1263, 1283, 2062
PspCI CACGTG 1 cut(s) 890
PspFI CCCAGC 4 cut(s) 374, 505, 1032, 2737
PspGI CCWGG 5 cut(s) 855, 1240, 1263, 1283, 2062
PspN4I GGNNCC 6 cut(s) 105, 1220, 1918, 2377, 2475, 2743
PspPI GGNCC 5 cut(s) 104, 1195, 1442, 2326, 2376
PspPPI RGGWCCY 1 cut(s) 2376
PstI CTGCAG 3 cut(s) 361, 778, 1051
PstNI CAGNNNCTG 2 cut(s) 1355, 1615
PsuI RGATCY 4 cut(s) 529, 1237, 1916, 2473
PvuII CAGCTG 5 cut(s) 464, 788, 1352, 1540, 1615
RsaI GTAC 4 cut(s) 961, 1112, 1992, 2075
RsaNI GTAC 4 cut(s) 960, 1111, 1991, 2074
RseI CAYNNNNRTG 5 cut(s) 96, 273, 540, 888, 1213
SacI GAGCTC 2 cut(s) 2043, 2439
SaqAI TTAA 6 cut(s) 36, 320, 870, 1905, 2124, 2259
Sau3AI GATC 8 cut(s) 529, 1237, 1579, 1916, 2005, 2095, 2473, 2483
Sau96I GGNCC 5 cut(s) 104, 1195, 1442, 2326, 2376
ScaI AGTACT 1 cut(s) 2075
SchI GAGTC 1 cut(s) 2338
ScrFI CCNGG 6 cut(s) 857, 1242, 1265, 1285, 2064, 2513
SduI GDGCHC 3 cut(s) 2043, 2439, 2744
SfcI CTRYAG 4 cut(s) 357, 774, 1047, 2150
SfiI GGCCNNNNNGGCC 1 cut(s) 2460
SinI GGWCC 2 cut(s) 2326, 2376
SmiMI CAYNNNNRTG 5 cut(s) 96, 273, 540, 888, 1213
SmlI CTYRAG 3 cut(s) 1909, 2707, 2716
SmoI CTYRAG 3 cut(s) 1909, 2707, 2716
SphI GCATGC 4 cut(s) 95, 272, 754, 1162
SseBI AGGCCT 1 cut(s) 2625
SsiI CCGC 8 cut(s) 101, 152, 326, 414, 454, 710, 1091, 2594
SspI AATATT 1 cut(s) 2179
SspMI CTAG 1 cut(s) 426
SstI GAGCTC 2 cut(s) 2043, 2439
StuI AGGCCT 1 cut(s) 2625
StyD4I CCNGG 6 cut(s) 855, 1240, 1263, 1283, 2062, 2511
StyI CCWWGG 6 cut(s) 1145, 1222, 1950, 2083, 2533, 2546
TaaI ACNGT 5 cut(s) 164, 718, 1187, 1554, 2025
TaiI ACGT 1 cut(s) 892
TaqI TCGA 3 cut(s) 568, 1403, 2347
TatI WGTACW 2 cut(s) 1990, 2073
Tru1I TTAA 6 cut(s) 36, 320, 870, 1905, 2124, 2259
Tru9I TTAA 6 cut(s) 36, 320, 870, 1905, 2124, 2259
TseFI GTSAC 4 cut(s) 158, 259, 2388, 2537
Tsp45I GTSAC 4 cut(s) 158, 259, 2388, 2537
TspGWI ACGGA 1 cut(s) 299
Van91I CCANNNNNTGG 2 cut(s) 1345, 2063
VpaK11BI GGWCC 2 cut(s) 2326, 2376
XagI CCTNNNNNAGG 2 cut(s) 54, 2383
XapI RAATTY 5 cut(s) 76, 551, 842, 1003, 2405
XceI RCATGY 5 cut(s) 95, 272, 754, 1162, 2449
XcmI CCANNNNNNNNNTGG 1 cut(s) 1229
XmiI GTMKAC 4 cut(s) 144, 345, 1321, 1335
XmnI GAANNNNTTC 1 cut(s) 2194
XspI CTAG 1 cut(s) 426
ZrmI AGTACT 1 cut(s) 2075
Zsp2I ATGCAT 2 cut(s) 270, 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.