Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 816 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 931 |
| Acc16I | TGCGCA | 1 cut(s) | 2465 |
| Acc36I | ACCTGC | 2 cut(s) | 157, 1304 |
| AccB1I | GGYRCC | 1 cut(s) | 582 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1342, 2099 |
| AccI | GTMKAC | 5 cut(s) | 141, 342, 1318, 1332, 2734 |
| AciI | CCGC | 7 cut(s) | 323, 451, 1350, 1941, 1997, 2115, 2127 |
| AclI | AACGTT | 1 cut(s) | 1097 |
| AclWI | GGATC | 6 cut(s) | 534, 1729, 1938, 1951, 2129, 2785 |
| AcoI | YGGCCR | 2 cut(s) | 855, 995 |
| AcsI | RAATTY | 6 cut(s) | 73, 548, 839, 1000, 2299, 2441 |
| AcuI | CTGAAG | 3 cut(s) | 32, 2337, 2525 |
| AdeI | CACNNNGTG | 1 cut(s) | 256 |
| AfaI | GTAC | 4 cut(s) | 958, 1884, 2028, 2131 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 125, 508, 1047, 1342, 2099, 2421, 2506, 2587 |
| AflII | CTTAAG | 1 cut(s) | 1936 |
| AgeI | ACCGGT | 1 cut(s) | 1988 |
| AjnI | CCWGG | 4 cut(s) | 507, 852, 1260, 2098 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1707, 1739 |
| AleI | CACNNNNGTG | 1 cut(s) | 1210 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 429, 461 |
| Alw21I | GWGCWC | 1 cut(s) | 2475 |
| Alw26I | GTCTC | 5 cut(s) | 117, 272, 917, 1407, 1485 |
| AlwI | GGATC | 6 cut(s) | 534, 1729, 1938, 1951, 2129, 2785 |
| AlwNI | CAGNNNCTG | 6 cut(s) | 1352, 1451, 1600, 1615, 1639, 1654 |
| Ama87I | CYCGRG | 1 cut(s) | 885 |
| AoxI | GGCC | 8 cut(s) | 101, 154, 568, 855, 995, 2488, 2497, 2659 |
| ApoI | RAATTY | 6 cut(s) | 73, 548, 839, 1000, 2299, 2441 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 546, 578, 1733, 1765 |
| AseI | ATTAAT | 1 cut(s) | 1197 |
| AsiGI | ACCGGT | 1 cut(s) | 1988 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2233 |
| AspLEI | GCGC | 2 cut(s) | 1014, 2466 |
| AspS9I | GGNCC | 6 cut(s) | 101, 154, 646, 2365, 2412, 2509 |
| AsuC2I | CCSGG | 1 cut(s) | 30 |
| AsuHPI | GGTGA | 5 cut(s) | 650, 1196, 2003, 2173, 2585 |
| AvaI | CYCGRG | 1 cut(s) | 885 |
| AvaII | GGWCC | 4 cut(s) | 646, 2365, 2412, 2509 |
| BaeGI | GKGCMC | 1 cut(s) | 2250 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 940, 973 |
| BalI | TGGCCA | 2 cut(s) | 857, 997 |
| BamHI | GGATCC | 1 cut(s) | 1943 |
| BanI | GGYRCC | 1 cut(s) | 582 |
| BanII | GRGCYC | 2 cut(s) | 1230, 2475 |
| BbsI | GAAGAC | 2 cut(s) | 752, 2343 |
| Bbv12I | GWGCWC | 1 cut(s) | 2475 |
| BbvCI | CCTCAGC | 1 cut(s) | 1821 |
| BccI | CCATC | 8 cut(s) | 48, 594, 841, 1120, 1175, 1578, 1789, 1907 |
| BceAI | ACGGC | 1 cut(s) | 438 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 152, 186, 2455, 2489 |
| BciT130I | CCWGG | 4 cut(s) | 509, 854, 1262, 2100 |
| BciVI | GTATCC | 1 cut(s) | 1119 |
| BclI | TGATCA | 1 cut(s) | 1582 |
| BcnI | CCSGG | 1 cut(s) | 30 |
| BcoDI | GTCTC | 5 cut(s) | 117, 272, 917, 1407, 1485 |
| BfaI | CTAG | 4 cut(s) | 107, 423, 828, 936 |
| BfmI | CTRYAG | 4 cut(s) | 354, 771, 1576, 1601 |
| BfoI | RGCGCY | 1 cut(s) | 1015 |
| BfrI | CTTAAG | 1 cut(s) | 1936 |
| BfuAI | ACCTGC | 2 cut(s) | 157, 1304 |
| BfuI | GTATCC | 1 cut(s) | 1119 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 580, 2496 |
| BlpI | GCTNAGC | 1 cut(s) | 1977 |
| Bme1390I | CCNGG | 5 cut(s) | 30, 509, 854, 1262, 2100 |
| Bme18I | GGWCC | 4 cut(s) | 646, 2365, 2412, 2509 |
| BmeT110I | CYCGRG | 1 cut(s) | 885 |
| BmgT120I | GGNCC | 6 cut(s) | 101, 154, 646, 2365, 2412, 2509 |
| BmiI | GGNNCC | 5 cut(s) | 584, 1945, 2386, 2413, 2511 |
| BmrFI | CCNGG | 5 cut(s) | 30, 509, 854, 1262, 2100 |
| BmrI | ACTGGG | 1 cut(s) | 1780 |
| BmuI | ACTGGG | 1 cut(s) | 1780 |
| BpiI | GAAGAC | 2 cut(s) | 752, 2343 |
| BpmI | CTGGAG | 2 cut(s) | 1512, 2031 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1533, 1539, 1821 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1977 |
| BpuEI | CTTGAG | 3 cut(s) | 1523, 2737, 2764 |
| BpuMI | CCSGG | 1 cut(s) | 30 |
| BsaAI | YACGTR | 2 cut(s) | 2480, 2728 |
| BsaWI | WCCGGW | 1 cut(s) | 1988 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 125, 508, 1047, 1342, 2099, 2421, 2506, 2587 |
| Bse118I | RCCGGY | 1 cut(s) | 1988 |
| Bse1I | ACTGG | 5 cut(s) | 970, 1786, 2271, 2386, 2433 |
| Bse3DI | GCAATG | 3 cut(s) | 1347, 2230, 2290 |
| BseBI | CCWGG | 4 cut(s) | 509, 854, 1262, 2100 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 125, 508, 1047, 1342, 2099, 2421, 2506, 2587 |
| BseMI | GCAATG | 3 cut(s) | 1347, 2230, 2290 |
| BseNI | ACTGG | 5 cut(s) | 970, 1786, 2271, 2386, 2433 |
| BseRI | GAGGAG | 1 cut(s) | 468 |
| BseSI | GKGCMC | 1 cut(s) | 2250 |
| BseYI | CCCAGC | 3 cut(s) | 98, 1029, 1046 |
| BsgI | GTGCAG | 2 cut(s) | 477, 1338 |
| BshFI | GGCC | 8 cut(s) | 103, 156, 570, 857, 997, 2490, 2499, 2661 |
| BshNI | GGYRCC | 1 cut(s) | 582 |
| BshTI | ACCGGT | 1 cut(s) | 1988 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2475 |
| BsiHKCI | CYCGRG | 1 cut(s) | 885 |
| BsiSI | CCGG | 2 cut(s) | 29, 1989 |
| BslFI | GGGAC | 1 cut(s) | 2666 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 125, 508, 1047, 1342, 2099, 2421, 2506, 2587 |
| BsmAI | GTCTC | 5 cut(s) | 117, 272, 917, 1407, 1485 |
| BsmBI | CGTCTC | 1 cut(s) | 272 |
| BsmFI | GGGAC | 1 cut(s) | 2666 |
| BsmI | GAATGC | 2 cut(s) | 1747, 2117 |
| BsnI | GGCC | 8 cut(s) | 103, 156, 570, 857, 997, 2490, 2499, 2661 |
| BsoBI | CYCGRG | 1 cut(s) | 885 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1230, 2250, 2475 |
| Bsp1407I | TGTACA | 1 cut(s) | 1882 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1977 |
| Bsp19I | CCATGG | 1 cut(s) | 1142 |
| BspACI | CCGC | 7 cut(s) | 323, 451, 1350, 1941, 1997, 2115, 2127 |
| BspANI | GGCC | 8 cut(s) | 103, 156, 570, 857, 997, 2490, 2499, 2661 |
| BspLI | GGNNCC | 5 cut(s) | 584, 1945, 2386, 2413, 2511 |
| BspMAI | CTGCAG | 3 cut(s) | 358, 775, 1605 |
| BspMI | ACCTGC | 2 cut(s) | 157, 1304 |
| BspPI | GGATC | 6 cut(s) | 534, 1729, 1938, 1951, 2129, 2785 |
| BspQI | GCTCTTC | 1 cut(s) | 1761 |
| BspT107I | GGYRCC | 1 cut(s) | 582 |
| BspTI | CTTAAG | 1 cut(s) | 1936 |
| BsrDI | GCAATG | 3 cut(s) | 1347, 2230, 2290 |
| BsrFI | RCCGGY | 1 cut(s) | 1988 |
| BsrGI | TGTACA | 1 cut(s) | 1882 |
| BsrI | ACTGG | 5 cut(s) | 970, 1786, 2271, 2386, 2433 |
| BssAI | RCCGGY | 1 cut(s) | 1988 |
| BssNAI | GTATAC | 2 cut(s) | 343, 1333 |
| BssT1I | CCWWGG | 8 cut(s) | 821, 1061, 1142, 1280, 1292, 2122, 2569, 2582 |
| Bst1107I | GTATAC | 2 cut(s) | 343, 1333 |
| Bst2UI | CCWGG | 4 cut(s) | 509, 854, 1262, 2100 |
| Bst4CI | ACNGT | 8 cut(s) | 715, 1172, 1401, 1557, 2046, 2061, 2669, 2719 |
| Bst6I | CTCTTC | 5 cut(s) | 126, 924, 1410, 1761, 1816 |
| BstAFI | CTTAAG | 1 cut(s) | 1936 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 779, 1352, 1615 |
| BstAUI | TGTACA | 1 cut(s) | 1882 |
| BstBAI | YACGTR | 2 cut(s) | 2480, 2728 |
| BstDSI | CCRYGG | 2 cut(s) | 1142, 1168 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2419 |
| BstH2I | RGCGCY | 1 cut(s) | 1015 |
| BstHHI | GCGC | 2 cut(s) | 1014, 2466 |
| BstMAI | GTCTC | 5 cut(s) | 117, 272, 917, 1407, 1485 |
| BstNI | CCWGG | 4 cut(s) | 509, 854, 1262, 2100 |
| BstNSI | RCATGY | 3 cut(s) | 92, 751, 904 |
| BstSCI | CCNGG | 5 cut(s) | 28, 507, 852, 1260, 2098 |
| BstSFI | CTRYAG | 4 cut(s) | 354, 771, 1576, 1601 |
| BstSLI | GKGCMC | 1 cut(s) | 2250 |
| BstV2I | GAAGAC | 2 cut(s) | 752, 2343 |
| BstX2I | RGATCY | 3 cut(s) | 526, 1734, 1943 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1212, 1268 |
| BstYI | RGATCY | 3 cut(s) | 526, 1734, 1943 |
| BstZ17I | GTATAC | 2 cut(s) | 343, 1333 |
| BsuI | GTATCC | 1 cut(s) | 1119 |
| BsuRI | GGCC | 8 cut(s) | 103, 156, 570, 857, 997, 2490, 2499, 2661 |
| BtgI | CCRYGG | 2 cut(s) | 1142, 1168 |
| BtsI | GCAGTG | 3 cut(s) | 1041, 2079, 2473 |
| BveI | ACCTGC | 2 cut(s) | 157, 1304 |
| CaiI | CAGNNNCTG | 6 cut(s) | 1352, 1451, 1600, 1615, 1639, 1654 |
| CfoI | GCGC | 2 cut(s) | 1014, 2466 |
| Cfr10I | RCCGGY | 1 cut(s) | 1988 |
| Cfr13I | GGNCC | 6 cut(s) | 101, 154, 646, 2365, 2412, 2509 |
| CseI | GACGC | 1 cut(s) | 1293 |
| Csp6I | GTAC | 4 cut(s) | 957, 1883, 2027, 2130 |
| CspAI | ACCGGT | 1 cut(s) | 1988 |
| CviQI | GTAC | 4 cut(s) | 957, 1883, 2027, 2130 |
| DraIII | CACNNNGTG | 1 cut(s) | 256 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 931 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 931 |
| EaeI | YGGCCR | 2 cut(s) | 855, 995 |
| Eam1104I | CTCTTC | 5 cut(s) | 126, 924, 1410, 1761, 1816 |
| EarI | CTCTTC | 5 cut(s) | 126, 924, 1410, 1761, 1816 |
| Ecl136II | GAGCTC | 1 cut(s) | 2473 |
| Eco130I | CCWWGG | 8 cut(s) | 821, 1061, 1142, 1280, 1292, 2122, 2569, 2582 |
| Eco147I | AGGCCT | 1 cut(s) | 2661 |
| Eco24I | GRGCYC | 2 cut(s) | 1230, 2475 |
| Eco47I | GGWCC | 4 cut(s) | 646, 2365, 2412, 2509 |
| Eco53kI | GAGCTC | 1 cut(s) | 2473 |
| Eco57I | CTGAAG | 3 cut(s) | 32, 2337, 2525 |
| Eco88I | CYCGRG | 1 cut(s) | 885 |
| EcoICRI | GAGCTC | 1 cut(s) | 2473 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2419 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2412, 2509 |
| EcoRI | GAATTC | 1 cut(s) | 73 |
| EcoRII | CCWGG | 4 cut(s) | 507, 852, 1260, 2098 |
| EcoT14I | CCWWGG | 8 cut(s) | 821, 1061, 1142, 1280, 1292, 2122, 2569, 2582 |
| EcoT38I | GRGCYC | 2 cut(s) | 1230, 2475 |
| ErhI | CCWWGG | 8 cut(s) | 821, 1061, 1142, 1280, 1292, 2122, 2569, 2582 |
| Esp3I | CGTCTC | 1 cut(s) | 272 |
| FaqI | GGGAC | 1 cut(s) | 2666 |
| FauI | CCCGC | 1 cut(s) | 458 |
| FauNDI | CATATG | 1 cut(s) | 1707 |
| FbaI | TGATCA | 1 cut(s) | 1582 |
| FblI | GTMKAC | 5 cut(s) | 141, 342, 1318, 1332, 2734 |
| FriOI | GRGCYC | 2 cut(s) | 1230, 2475 |
| FspBI | CTAG | 4 cut(s) | 107, 423, 828, 936 |
| FspI | TGCGCA | 1 cut(s) | 2465 |
| GlaI | GCGC | 2 cut(s) | 1013, 2465 |
| GsaI | CCCAGC | 3 cut(s) | 102, 1033, 1050 |
| GsuI | CTGGAG | 2 cut(s) | 1512, 2031 |
| HaeII | RGCGCY | 1 cut(s) | 1015 |
| HaeIII | GGCC | 8 cut(s) | 103, 156, 570, 857, 997, 2490, 2499, 2661 |
| HapII | CCGG | 2 cut(s) | 29, 1989 |
| HgaI | GACGC | 1 cut(s) | 1293 |
| HhaI | GCGC | 2 cut(s) | 1014, 2466 |
| Hin6I | GCGC | 2 cut(s) | 1012, 2464 |
| HinP1I | GCGC | 2 cut(s) | 1012, 2464 |
| HincII | GTYRAC | 3 cut(s) | 2545, 2722, 2735 |
| HindII | GTYRAC | 3 cut(s) | 2545, 2722, 2735 |
| HindIII | AAGCTT | 1 cut(s) | 2693 |
| HpaII | CCGG | 2 cut(s) | 29, 1989 |
| HphI | GGTGA | 5 cut(s) | 650, 1196, 2003, 2173, 2585 |
| Hpy99I | CGWCG | 1 cut(s) | 948 |
| HpyAV | CCTTC | 9 cut(s) | 47, 596, 1015, 1423, 1872, 2389, 2489, 2500, 2651 |
| HpyCH4III | ACNGT | 8 cut(s) | 715, 1172, 1401, 1557, 2046, 2061, 2669, 2719 |
| HpyCH4IV | ACGT | 3 cut(s) | 1097, 2479, 2727 |
| HpySE526I | ACGT | 3 cut(s) | 1097, 2479, 2727 |
| HspAI | GCGC | 2 cut(s) | 1012, 2464 |
| Ksp22I | TGATCA | 1 cut(s) | 1582 |
| LguI | GCTCTTC | 1 cut(s) | 1761 |
| LmnI | GCTCC | 3 cut(s) | 603, 1531, 2012 |
| MaeI | CTAG | 4 cut(s) | 107, 423, 828, 936 |
| MaeII | ACGT | 3 cut(s) | 1097, 2479, 2727 |
| MaeIII | GTNAC | 6 cut(s) | 256, 740, 974, 1565, 2424, 2573 |
| MfeI | CAATTG | 1 cut(s) | 1715 |
| MflI | RGATCY | 3 cut(s) | 526, 1734, 1943 |
| MhlI | GDGCHC | 3 cut(s) | 1230, 2250, 2475 |
| MlsI | TGGCCA | 2 cut(s) | 857, 997 |
| MluNI | TGGCCA | 2 cut(s) | 857, 997 |
| MlyI | GAGTC | 1 cut(s) | 941 |
| MmeI | TCCRAC | 3 cut(s) | 1828, 1971, 2402 |
| Mox20I | TGGCCA | 2 cut(s) | 857, 997 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2233 |
| MscI | TGGCCA | 2 cut(s) | 857, 997 |
| MseI | TTAA | 6 cut(s) | 36, 317, 867, 1197, 1932, 1937 |
| MslI | CAYNNNNRTG | 4 cut(s) | 93, 270, 537, 1210 |
| Msp20I | TGGCCA | 2 cut(s) | 857, 997 |
| MspA1I | CMGCKG | 8 cut(s) | 461, 785, 1352, 1448, 1600, 1615, 1639, 1654 |
| MspCI | CTTAAG | 1 cut(s) | 1936 |
| MspI | CCGG | 2 cut(s) | 29, 1989 |
| MspR9I | CCNGG | 5 cut(s) | 30, 509, 854, 1262, 2100 |
| MunI | CAATTG | 1 cut(s) | 1715 |
| Mva1269I | GAATGC | 2 cut(s) | 1747, 2117 |
| MvaI | CCWGG | 4 cut(s) | 509, 854, 1262, 2100 |
| NciI | CCSGG | 1 cut(s) | 30 |
| NcoI | CCATGG | 1 cut(s) | 1142 |
| NdeI | CATATG | 1 cut(s) | 1707 |
| NlaIV | GGNNCC | 5 cut(s) | 584, 1945, 2386, 2413, 2511 |
| NmuCI | GTSAC | 5 cut(s) | 256, 740, 974, 2424, 2573 |
| NsbI | TGCGCA | 1 cut(s) | 2465 |
| NspI | RCATGY | 3 cut(s) | 92, 751, 904 |
| OliI | CACNNNNGTG | 1 cut(s) | 1210 |
| PaeI | GCATGC | 3 cut(s) | 92, 751, 904 |
| PceI | AGGCCT | 1 cut(s) | 2661 |
| PciSI | GCTCTTC | 1 cut(s) | 1761 |
| PctI | GAATGC | 2 cut(s) | 1747, 2117 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2233 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1342, 2099 |
| PinAI | ACCGGT | 1 cut(s) | 1988 |
| PleI | GAGTC | 1 cut(s) | 940 |
| PpsI | GAGTC | 1 cut(s) | 940 |
| Ppu21I | YACGTR | 2 cut(s) | 2480, 2728 |
| PpuMI | RGGWCCY | 2 cut(s) | 2412, 2509 |
| PshBI | ATTAAT | 1 cut(s) | 1197 |
| PsiI | TTATAA | 1 cut(s) | 816 |
| Psp124BI | GAGCTC | 1 cut(s) | 2475 |
| Psp1406I | AACGTT | 1 cut(s) | 1097 |
| Psp5II | RGGWCCY | 2 cut(s) | 2412, 2509 |
| Psp6I | CCWGG | 4 cut(s) | 507, 852, 1260, 2098 |
| PspFI | CCCAGC | 3 cut(s) | 98, 1029, 1046 |
| PspGI | CCWGG | 4 cut(s) | 507, 852, 1260, 2098 |
| PspN4I | GGNNCC | 5 cut(s) | 584, 1945, 2386, 2413, 2511 |
| PspPI | GGNCC | 6 cut(s) | 101, 154, 646, 2365, 2412, 2509 |
| PspPPI | RGGWCCY | 2 cut(s) | 2412, 2509 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1882, 1914 |
| PstI | CTGCAG | 3 cut(s) | 358, 775, 1605 |
| PstNI | CAGNNNCTG | 6 cut(s) | 1352, 1451, 1600, 1615, 1639, 1654 |
| PsuI | RGATCY | 3 cut(s) | 526, 1734, 1943 |
| PvuII | CAGCTG | 7 cut(s) | 461, 785, 1448, 1600, 1615, 1639, 1654 |
| RsaI | GTAC | 4 cut(s) | 958, 1884, 2028, 2131 |
| RsaNI | GTAC | 4 cut(s) | 957, 1883, 2027, 2130 |
| RseI | CAYNNNNRTG | 4 cut(s) | 93, 270, 537, 1210 |
| SacI | GAGCTC | 1 cut(s) | 2475 |
| SalI | GTCGAC | 1 cut(s) | 2733 |
| SapI | GCTCTTC | 1 cut(s) | 1761 |
| SaqAI | TTAA | 6 cut(s) | 36, 317, 867, 1197, 1932, 1937 |
| Sau96I | GGNCC | 6 cut(s) | 101, 154, 646, 2365, 2412, 2509 |
| SchI | GAGTC | 1 cut(s) | 941 |
| ScrFI | CCNGG | 5 cut(s) | 30, 509, 854, 1262, 2100 |
| SduI | GDGCHC | 3 cut(s) | 1230, 2250, 2475 |
| SfcI | CTRYAG | 4 cut(s) | 354, 771, 1576, 1601 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 2496 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1988 |
| SinI | GGWCC | 4 cut(s) | 646, 2365, 2412, 2509 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 93, 270, 537, 1210 |
| SmlI | CTYRAG | 4 cut(s) | 1502, 1936, 2743, 2752 |
| SmoI | CTYRAG | 4 cut(s) | 1502, 1936, 2743, 2752 |
| SphI | GCATGC | 3 cut(s) | 92, 751, 904 |
| SseBI | AGGCCT | 1 cut(s) | 2661 |
| SsiI | CCGC | 7 cut(s) | 323, 451, 1350, 1941, 1997, 2115, 2127 |
| SspI | AATATT | 1 cut(s) | 2218 |
| SspMI | CTAG | 4 cut(s) | 107, 423, 828, 936 |
| SstI | GAGCTC | 1 cut(s) | 2475 |
| StuI | AGGCCT | 1 cut(s) | 2661 |
| StyD4I | CCNGG | 5 cut(s) | 28, 507, 852, 1260, 2098 |
| StyI | CCWWGG | 8 cut(s) | 821, 1061, 1142, 1280, 1292, 2122, 2569, 2582 |
| TaaI | ACNGT | 8 cut(s) | 715, 1172, 1401, 1557, 2046, 2061, 2669, 2719 |
| TaiI | ACGT | 3 cut(s) | 1100, 2482, 2730 |
| TaqI | TCGA | 4 cut(s) | 565, 946, 2734, 2784 |
| TaqII | GACCGA | 1 cut(s) | 634 |
| TatI | WGTACW | 2 cut(s) | 1882, 2026 |
| TauI | GCSGC | 1 cut(s) | 1352 |
| Tru1I | TTAA | 6 cut(s) | 36, 317, 867, 1197, 1932, 1937 |
| Tru9I | TTAA | 6 cut(s) | 36, 317, 867, 1197, 1932, 1937 |
| TseFI | GTSAC | 5 cut(s) | 256, 740, 974, 2424, 2573 |
| Tsp45I | GTSAC | 5 cut(s) | 256, 740, 974, 2424, 2573 |
| TspDTI | ATGAA | 8 cut(s) | 77, 300, 555, 678, 1050, 1854, 2163, 2346 |
| TspGWI | ACGGA | 3 cut(s) | 296, 932, 2233 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1342, 2099 |
| Vha464I | CTTAAG | 1 cut(s) | 1936 |
| VpaK11BI | GGWCC | 4 cut(s) | 646, 2365, 2412, 2509 |
| VspI | ATTAAT | 1 cut(s) | 1197 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2419 |
| XapI | RAATTY | 6 cut(s) | 73, 548, 839, 1000, 2299, 2441 |
| XceI | RCATGY | 3 cut(s) | 92, 751, 904 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 190, 1005 |
| XmiI | GTMKAC | 5 cut(s) | 141, 342, 1318, 1332, 2734 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2233 |
| XspI | CTAG | 4 cut(s) | 107, 423, 828, 936 |