Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 801 |
| Acc36I | ACCTGC | 2 cut(s) | 1413, 1821 |
| Acc65I | GGTACC | 1 cut(s) | 330 |
| AccB1I | GGYRCC | 2 cut(s) | 330, 567 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1324 |
| AccI | GTMKAC | 1 cut(s) | 1427 |
| AccII | CGCG | 2 cut(s) | 1221, 2352 |
| AccIII | TCCGGA | 1 cut(s) | 675 |
| AclWI | GGATC | 4 cut(s) | 519, 962, 1355, 2015 |
| AcoI | YGGCCR | 4 cut(s) | 553, 1127, 1850, 2471 |
| AcsI | RAATTY | 5 cut(s) | 61, 1180, 1570, 1957, 2629 |
| AcuI | CTGAAG | 1 cut(s) | 1532 |
| AcyI | GRCGYC | 1 cut(s) | 1284 |
| AdeI | CACNNNGTG | 1 cut(s) | 244 |
| AfaI | GTAC | 5 cut(s) | 332, 412, 848, 1316, 2158 |
| AflII | CTTAAG | 1 cut(s) | 1115 |
| AflIII | ACRYGT | 1 cut(s) | 1311 |
| AgsI | TTSAA | 4 cut(s) | 61, 1343, 1874, 2381 |
| AjnI | CCWGG | 5 cut(s) | 36, 1132, 1243, 1981, 2468 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 615, 647 |
| Alw21I | GWGCWC | 2 cut(s) | 1997, 2018 |
| Alw26I | GTCTC | 4 cut(s) | 260, 1209, 1772, 2238 |
| AlwI | GGATC | 4 cut(s) | 519, 962, 1355, 2015 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1558, 2168 |
| Ama87I | CYCGRG | 2 cut(s) | 2456, 2660 |
| Aor13HI | TCCGGA | 1 cut(s) | 675 |
| AoxI | GGCC | 8 cut(s) | 553, 977, 1127, 1850, 2248, 2374, 2471, 2545 |
| ApoI | RAATTY | 5 cut(s) | 61, 1180, 1570, 1957, 2629 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 531, 563 |
| AseI | ATTAAT | 1 cut(s) | 1832 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1574, 1878 |
| Asp718I | GGTACC | 1 cut(s) | 330 |
| AspLEI | GCGC | 3 cut(s) | 996, 1847, 2352 |
| AspS9I | GGNCC | 5 cut(s) | 89, 1931, 2248, 2298, 2395 |
| AsuC2I | CCSGG | 1 cut(s) | 2435 |
| AsuHPI | GGTGA | 5 cut(s) | 781, 1659, 2314, 2366, 2505 |
| AsuII | TTCGAA | 2 cut(s) | 895, 906 |
| AsuNHI | GCTAGC | 1 cut(s) | 812 |
| AvaI | CYCGRG | 2 cut(s) | 2456, 2660 |
| AvaII | GGWCC | 4 cut(s) | 89, 1931, 2298, 2395 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 394, 427 |
| BalI | TGGCCA | 3 cut(s) | 555, 1129, 1852 |
| BanI | GGYRCC | 2 cut(s) | 330, 567 |
| Bbv12I | GWGCWC | 2 cut(s) | 1997, 2018 |
| BccI | CCATC | 7 cut(s) | 320, 826, 1102, 1512, 1804, 1861, 2040 |
| BceAI | ACGGC | 1 cut(s) | 105 |
| BciT130I | CCWGG | 5 cut(s) | 38, 1134, 1245, 1983, 2470 |
| BciVI | GTATCC | 2 cut(s) | 683, 1101 |
| BclI | TGATCA | 1 cut(s) | 1600 |
| BcnI | CCSGG | 1 cut(s) | 2435 |
| BcoDI | GTCTC | 4 cut(s) | 260, 1209, 1772, 2238 |
| BfaI | CTAG | 6 cut(s) | 813, 965, 1419, 1595, 1818, 2549 |
| BfmI | CTRYAG | 4 cut(s) | 1391, 1559, 2160, 2228 |
| BfoI | RGCGCY | 1 cut(s) | 997 |
| BfrI | CTTAAG | 1 cut(s) | 1115 |
| BfuAI | ACCTGC | 2 cut(s) | 1413, 1821 |
| BfuI | GTATCC | 2 cut(s) | 683, 1101 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 565, 2382 |
| BmcAI | AGTACT | 1 cut(s) | 2158 |
| Bme1390I | CCNGG | 6 cut(s) | 38, 1134, 1245, 1983, 2435, 2470 |
| Bme18I | GGWCC | 4 cut(s) | 89, 1931, 2298, 2395 |
| BmeT110I | CYCGRG | 2 cut(s) | 2456, 2660 |
| BmgT120I | GGNCC | 5 cut(s) | 89, 1931, 2248, 2298, 2395 |
| BmiI | GGNNCC | 7 cut(s) | 90, 119, 332, 569, 1730, 2299, 2397 |
| BmrFI | CCNGG | 6 cut(s) | 38, 1134, 1245, 1983, 2435, 2470 |
| BmrI | ACTGGG | 1 cut(s) | 1657 |
| BmsI | GCATC | 7 cut(s) | 173, 175, 693, 876, 1428, 1450, 1573 |
| BmtI | GCTAGC | 1 cut(s) | 816 |
| BmuI | ACTGGG | 1 cut(s) | 1657 |
| BpmI | CTGGAG | 3 cut(s) | 642, 1911, 2220 |
| Bpu14I | TTCGAA | 2 cut(s) | 895, 906 |
| BpuEI | CTTGAG | 3 cut(s) | 123, 2173, 2608 |
| BpuMI | CCSGG | 1 cut(s) | 2435 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1167 |
| BsaHI | GRCGYC | 1 cut(s) | 1284 |
| BsaI | GGTCTC | 1 cut(s) | 1209 |
| BsaWI | WCCGGW | 1 cut(s) | 675 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 615, 645 |
| Bse118I | RCCGGY | 2 cut(s) | 106, 2613 |
| Bse1I | ACTGG | 5 cut(s) | 399, 955, 1663, 2202, 2319 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1167 |
| BseAI | TCCGGA | 1 cut(s) | 675 |
| BseBI | CCWGG | 5 cut(s) | 38, 1134, 1245, 1983, 2470 |
| BseJI | GATNNNNATC | 1 cut(s) | 1167 |
| BseMII | CTCAG | 5 cut(s) | 1011, 1535, 1547, 1967, 2588 |
| BseNI | ACTGG | 5 cut(s) | 399, 955, 1663, 2202, 2319 |
| BseRI | GAGGAG | 3 cut(s) | 1218, 2115, 2444 |
| BseYI | CCCAGC | 2 cut(s) | 337, 1028 |
| BsgI | GTGCAG | 2 cut(s) | 1320, 2546 |
| Bsh1236I | CGCG | 2 cut(s) | 1221, 2352 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1124 |
| BshFI | GGCC | 8 cut(s) | 555, 979, 1129, 1852, 2250, 2376, 2473, 2547 |
| BshNI | GGYRCC | 2 cut(s) | 330, 567 |
| BsiEI | CGRYCG | 1 cut(s) | 1124 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1997, 2018 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2456, 2660 |
| BsiSI | CCGG | 5 cut(s) | 107, 676, 2434, 2474, 2614 |
| BslFI | GGGAC | 3 cut(s) | 756, 1610, 2552 |
| BsmAI | GTCTC | 4 cut(s) | 260, 1209, 1772, 2238 |
| BsmBI | CGTCTC | 1 cut(s) | 260 |
| BsmFI | GGGAC | 3 cut(s) | 756, 1610, 2552 |
| BsnI | GGCC | 8 cut(s) | 555, 979, 1129, 1852, 2250, 2376, 2473, 2547 |
| Bso31I | GGTCTC | 1 cut(s) | 1209 |
| BsoBI | CYCGRG | 2 cut(s) | 2456, 2660 |
| Bsp119I | TTCGAA | 2 cut(s) | 895, 906 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1997, 2018 |
| Bsp13I | TCCGGA | 1 cut(s) | 675 |
| Bsp143I | GATC | 7 cut(s) | 511, 967, 1168, 1360, 1600, 2020, 2405 |
| Bsp19I | CCATGG | 3 cut(s) | 415, 1150, 2251 |
| BspANI | GGCC | 8 cut(s) | 555, 979, 1129, 1852, 2250, 2376, 2473, 2547 |
| BspCNI | CTCAG | 5 cut(s) | 1010, 1534, 1546, 1966, 2587 |
| BspEI | TCCGGA | 1 cut(s) | 675 |
| BspFNI | CGCG | 2 cut(s) | 1221, 2352 |
| BspHI | TCATGA | 1 cut(s) | 517 |
| BspLI | GGNNCC | 7 cut(s) | 90, 119, 332, 569, 1730, 2299, 2397 |
| BspMAI | CTGCAG | 3 cut(s) | 1395, 1563, 2232 |
| BspMI | ACCTGC | 2 cut(s) | 1413, 1821 |
| BspOI | GCTAGC | 1 cut(s) | 816 |
| BspPI | GGATC | 4 cut(s) | 519, 962, 1355, 2015 |
| BspT104I | TTCGAA | 2 cut(s) | 895, 906 |
| BspT107I | GGYRCC | 2 cut(s) | 330, 567 |
| BspTI | CTTAAG | 1 cut(s) | 1115 |
| BspTNI | GGTCTC | 1 cut(s) | 1209 |
| BsrFI | RCCGGY | 2 cut(s) | 106, 2613 |
| BsrI | ACTGG | 5 cut(s) | 399, 955, 1663, 2202, 2319 |
| BssAI | RCCGGY | 2 cut(s) | 106, 2613 |
| BssMI | GATC | 7 cut(s) | 511, 967, 1168, 1360, 1600, 2020, 2405 |
| BssNI | GRCGYC | 1 cut(s) | 1284 |
| BssT1I | CCWWGG | 6 cut(s) | 415, 667, 806, 1150, 1274, 2251 |
| Bst2UI | CCWGG | 5 cut(s) | 38, 1134, 1245, 1983, 2470 |
| Bst4CI | ACNGT | 8 cut(s) | 72, 149, 700, 1125, 1671, 1766, 1926, 1977 |
| Bst6I | CTCTTC | 3 cut(s) | 44, 1884, 2073 |
| BstACI | GRCGYC | 1 cut(s) | 1284 |
| BstAFI | CTTAAG | 1 cut(s) | 1115 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1558 |
| BstBI | TTCGAA | 2 cut(s) | 895, 906 |
| BstDEI | CTNAG | 9 cut(s) | 305, 997, 1109, 1521, 1533, 1857, 1953, 2096, 2574 |
| BstDSI | CCRYGG | 6 cut(s) | 415, 1124, 1150, 1219, 2251, 2649 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2305 |
| BstFNI | CGCG | 2 cut(s) | 1221, 2352 |
| BstH2I | RGCGCY | 1 cut(s) | 997 |
| BstHHI | GCGC | 3 cut(s) | 996, 1847, 2352 |
| BstKTI | GATC | 7 cut(s) | 514, 970, 1171, 1363, 1603, 2023, 2408 |
| BstMAI | GTCTC | 4 cut(s) | 260, 1209, 1772, 2238 |
| BstMBI | GATC | 7 cut(s) | 511, 967, 1168, 1360, 1600, 2020, 2405 |
| BstMCI | CGRYCG | 1 cut(s) | 1124 |
| BstNI | CCWGG | 5 cut(s) | 38, 1134, 1245, 1983, 2470 |
| BstNSI | RCATGY | 4 cut(s) | 80, 257, 736, 1315 |
| BstSCI | CCNGG | 6 cut(s) | 36, 1132, 1243, 1981, 2433, 2468 |
| BstSFI | CTRYAG | 4 cut(s) | 1391, 1559, 2160, 2228 |
| BstUI | CGCG | 2 cut(s) | 1221, 2352 |
| BstX2I | RGATCY | 3 cut(s) | 511, 967, 1360 |
| BstYI | RGATCY | 3 cut(s) | 511, 967, 1360 |
| BsuI | GTATCC | 2 cut(s) | 683, 1101 |
| BsuRI | GGCC | 8 cut(s) | 555, 979, 1129, 1852, 2250, 2376, 2473, 2547 |
| BtgI | CCRYGG | 6 cut(s) | 415, 1124, 1150, 1219, 2251, 2649 |
| BtsIMutI | CAGTG | 5 cut(s) | 154, 406, 2016, 2166, 2312 |
| BveI | ACCTGC | 2 cut(s) | 1413, 1821 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1558, 2168 |
| CciI | TCATGA | 1 cut(s) | 517 |
| CfoI | GCGC | 3 cut(s) | 996, 1847, 2352 |
| Cfr10I | RCCGGY | 2 cut(s) | 106, 2613 |
| Cfr13I | GGNCC | 5 cut(s) | 89, 1931, 2248, 2298, 2395 |
| Cfr42I | CCGCGG | 1 cut(s) | 1222 |
| CseI | GACGC | 1 cut(s) | 1292 |
| Csp6I | GTAC | 5 cut(s) | 331, 411, 847, 1315, 2157 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1175, 1210 |
| CviQI | GTAC | 5 cut(s) | 331, 411, 847, 1315, 2157 |
| DdeI | CTNAG | 9 cut(s) | 305, 997, 1109, 1521, 1533, 1857, 1953, 2096, 2574 |
| DpnI | GATC | 7 cut(s) | 513, 969, 1170, 1362, 1602, 2022, 2407 |
| DpnII | GATC | 7 cut(s) | 511, 967, 1168, 1360, 1600, 2020, 2405 |
| DraIII | CACNNNGTG | 1 cut(s) | 244 |
| EaeI | YGGCCR | 4 cut(s) | 553, 1127, 1850, 2471 |
| Eam1104I | CTCTTC | 3 cut(s) | 44, 1884, 2073 |
| EarI | CTCTTC | 3 cut(s) | 44, 1884, 2073 |
| EciI | GGCGGA | 1 cut(s) | 917 |
| Eco130I | CCWWGG | 6 cut(s) | 415, 667, 806, 1150, 1274, 2251 |
| Eco147I | AGGCCT | 1 cut(s) | 2547 |
| Eco31I | GGTCTC | 1 cut(s) | 1209 |
| Eco32I | GATATC | 1 cut(s) | 2320 |
| Eco47I | GGWCC | 4 cut(s) | 89, 1931, 2298, 2395 |
| Eco57I | CTGAAG | 1 cut(s) | 1532 |
| Eco88I | CYCGRG | 2 cut(s) | 2456, 2660 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2305 |
| EcoO109I | RGGNCCY | 4 cut(s) | 89, 1931, 2298, 2395 |
| EcoRI | GAATTC | 4 cut(s) | 61, 1180, 1570, 1957 |
| EcoRII | CCWGG | 5 cut(s) | 36, 1132, 1243, 1981, 2468 |
| EcoRV | GATATC | 1 cut(s) | 2320 |
| EcoT14I | CCWWGG | 6 cut(s) | 415, 667, 806, 1150, 1274, 2251 |
| EcoT22I | ATGCAT | 3 cut(s) | 255, 1443, 2136 |
| ErhI | CCWWGG | 6 cut(s) | 415, 667, 806, 1150, 1274, 2251 |
| Esp3I | CGTCTC | 1 cut(s) | 260 |
| FaqI | GGGAC | 3 cut(s) | 756, 1610, 2552 |
| FauI | CCCGC | 2 cut(s) | 79, 1854 |
| FauNDI | CATATG | 1 cut(s) | 1449 |
| FbaI | TGATCA | 1 cut(s) | 1600 |
| FblI | GTMKAC | 1 cut(s) | 1427 |
| FspBI | CTAG | 6 cut(s) | 813, 965, 1419, 1595, 1818, 2549 |
| GlaI | GCGC | 3 cut(s) | 995, 1846, 2351 |
| GsaI | CCCAGC | 2 cut(s) | 341, 1032 |
| GsuI | CTGGAG | 3 cut(s) | 642, 1911, 2220 |
| HaeII | RGCGCY | 1 cut(s) | 997 |
| HaeIII | GGCC | 8 cut(s) | 555, 979, 1129, 1852, 2250, 2376, 2473, 2547 |
| HapII | CCGG | 5 cut(s) | 107, 676, 2434, 2474, 2614 |
| HgaI | GACGC | 1 cut(s) | 1292 |
| HhaI | GCGC | 3 cut(s) | 996, 1847, 2352 |
| Hin1I | GRCGYC | 1 cut(s) | 1284 |
| Hin6I | GCGC | 3 cut(s) | 994, 1845, 2350 |
| HinP1I | GCGC | 3 cut(s) | 994, 1845, 2350 |
| HincII | GTYRAC | 2 cut(s) | 233, 2431 |
| HindII | GTYRAC | 2 cut(s) | 233, 2431 |
| HindIII | AAGCTT | 1 cut(s) | 208 |
| HpaII | CCGG | 5 cut(s) | 107, 676, 2434, 2474, 2614 |
| HphI | GGTGA | 5 cut(s) | 781, 1659, 2314, 2366, 2505 |
| Hpy166II | GTNNAC | 5 cut(s) | 152, 233, 1428, 2287, 2431 |
| Hpy188I | TCNGA | 8 cut(s) | 67, 823, 1236, 1524, 1569, 1717, 1956, 2577 |
| Hpy8I | GTNNAC | 5 cut(s) | 152, 233, 1428, 2287, 2431 |
| Hpy99I | CGWCG | 2 cut(s) | 441, 2603 |
| HpyCH4III | ACNGT | 8 cut(s) | 72, 149, 700, 1125, 1671, 1766, 1926, 1977 |
| HpyF3I | CTNAG | 9 cut(s) | 305, 997, 1109, 1521, 1533, 1857, 1953, 2096, 2574 |
| Hsp92I | GRCGYC | 1 cut(s) | 1284 |
| HspAI | GCGC | 3 cut(s) | 994, 1845, 2350 |
| Kpn2I | TCCGGA | 1 cut(s) | 675 |
| KpnI | GGTACC | 1 cut(s) | 334 |
| KroI | GCCGGC | 1 cut(s) | 2613 |
| KroNI | GCCGGC | 1 cut(s) | 2615 |
| Ksp22I | TGATCA | 1 cut(s) | 1600 |
| KspI | CCGCGG | 1 cut(s) | 1222 |
| Kzo9I | GATC | 7 cut(s) | 511, 967, 1168, 1360, 1600, 2020, 2405 |
| LmnI | GCTCC | 2 cut(s) | 117, 2013 |
| LweI | GCATC | 7 cut(s) | 173, 175, 693, 876, 1428, 1450, 1573 |
| MaeI | CTAG | 6 cut(s) | 813, 965, 1419, 1595, 1818, 2549 |
| MalI | GATC | 7 cut(s) | 513, 969, 1170, 1362, 1602, 2022, 2407 |
| MboI | GATC | 7 cut(s) | 511, 967, 1168, 1360, 1600, 2020, 2405 |
| MboII | GAAGA | 9 cut(s) | 61, 506, 926, 1538, 1638, 1871, 1878, 2060, 2441 |
| MfeI | CAATTG | 1 cut(s) | 1869 |
| MflI | RGATCY | 3 cut(s) | 511, 967, 1360 |
| MhlI | GDGCHC | 2 cut(s) | 1997, 2018 |
| MlsI | TGGCCA | 3 cut(s) | 555, 1129, 1852 |
| MluNI | TGGCCA | 3 cut(s) | 555, 1129, 1852 |
| MlyI | GAGTC | 5 cut(s) | 1519, 1630, 2066, 2114, 2615 |
| MmeI | TCCRAC | 1 cut(s) | 2370 |
| Mox20I | TGGCCA | 3 cut(s) | 555, 1129, 1852 |
| Mph1103I | ATGCAT | 3 cut(s) | 255, 1443, 2136 |
| MroI | TCCGGA | 1 cut(s) | 675 |
| MroNI | GCCGGC | 1 cut(s) | 2613 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1574, 1878 |
| MscI | TGGCCA | 3 cut(s) | 555, 1129, 1852 |
| MseI | TTAA | 6 cut(s) | 500, 1073, 1116, 1832, 2181, 2280 |
| MslI | CAYNNNNRTG | 3 cut(s) | 81, 258, 522 |
| Msp20I | TGGCCA | 3 cut(s) | 555, 1129, 1852 |
| MspA1I | CMGCKG | 5 cut(s) | 446, 770, 838, 1028, 1221 |
| MspCI | CTTAAG | 1 cut(s) | 1115 |
| MspI | CCGG | 5 cut(s) | 107, 676, 2434, 2474, 2614 |
| MspR9I | CCNGG | 6 cut(s) | 38, 1134, 1245, 1983, 2435, 2470 |
| MunI | CAATTG | 1 cut(s) | 1869 |
| MvaI | CCWGG | 5 cut(s) | 38, 1134, 1245, 1983, 2470 |
| MvnI | CGCG | 2 cut(s) | 1221, 2352 |
| NaeI | GCCGGC | 1 cut(s) | 2615 |
| NciI | CCSGG | 1 cut(s) | 2435 |
| NcoI | CCATGG | 3 cut(s) | 415, 1150, 2251 |
| NdeI | CATATG | 1 cut(s) | 1449 |
| NdeII | GATC | 7 cut(s) | 511, 967, 1168, 1360, 1600, 2020, 2405 |
| NgoMIV | GCCGGC | 1 cut(s) | 2613 |
| NheI | GCTAGC | 1 cut(s) | 812 |
| NlaIV | GGNNCC | 7 cut(s) | 90, 119, 332, 569, 1730, 2299, 2397 |
| NsiI | ATGCAT | 3 cut(s) | 255, 1443, 2136 |
| NspI | RCATGY | 4 cut(s) | 80, 257, 736, 1315 |
| NspV | TTCGAA | 2 cut(s) | 895, 906 |
| PaeI | GCATGC | 3 cut(s) | 80, 257, 736 |
| PaeR7I | CTCGAG | 1 cut(s) | 2660 |
| PagI | TCATGA | 1 cut(s) | 517 |
| PceI | AGGCCT | 1 cut(s) | 2547 |
| PciI | ACATGT | 1 cut(s) | 1311 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1973 |
| PdiI | GCCGGC | 1 cut(s) | 2615 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1574, 1878 |
| PfeI | GAWTC | 9 cut(s) | 626, 655, 917, 1019, 1224, 1460, 1612, 1718, 2216 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1324 |
| PleI | GAGTC | 5 cut(s) | 1519, 1630, 2065, 2114, 2615 |
| PpsI | GAGTC | 5 cut(s) | 1519, 1630, 2065, 2114, 2615 |
| PpuMI | RGGWCCY | 4 cut(s) | 89, 1931, 2298, 2395 |
| PscI | ACATGT | 1 cut(s) | 1311 |
| PshBI | ATTAAT | 1 cut(s) | 1832 |
| PsiI | TTATAA | 1 cut(s) | 801 |
| Psp5II | RGGWCCY | 4 cut(s) | 89, 1931, 2298, 2395 |
| Psp6I | CCWGG | 5 cut(s) | 36, 1132, 1243, 1981, 2468 |
| PspFI | CCCAGC | 2 cut(s) | 337, 1028 |
| PspGI | CCWGG | 5 cut(s) | 36, 1132, 1243, 1981, 2468 |
| PspN4I | GGNNCC | 7 cut(s) | 90, 119, 332, 569, 1730, 2299, 2397 |
| PspPI | GGNCC | 5 cut(s) | 89, 1931, 2248, 2298, 2395 |
| PspPPI | RGGWCCY | 4 cut(s) | 89, 1931, 2298, 2395 |
| PspXI | VCTCGAGB | 1 cut(s) | 2660 |
| PstI | CTGCAG | 3 cut(s) | 1395, 1563, 2232 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1558, 2168 |
| PsuI | RGATCY | 3 cut(s) | 511, 967, 1360 |
| PvuII | CAGCTG | 3 cut(s) | 446, 770, 1028 |
| RsaI | GTAC | 5 cut(s) | 332, 412, 848, 1316, 2158 |
| RsaNI | GTAC | 5 cut(s) | 331, 411, 847, 1315, 2157 |
| RseI | CAYNNNNRTG | 3 cut(s) | 81, 258, 522 |
| SacII | CCGCGG | 1 cut(s) | 1222 |
| SaqAI | TTAA | 6 cut(s) | 500, 1073, 1116, 1832, 2181, 2280 |
| Sau3AI | GATC | 7 cut(s) | 511, 967, 1168, 1360, 1600, 2020, 2405 |
| Sau96I | GGNCC | 5 cut(s) | 89, 1931, 2248, 2298, 2395 |
| ScaI | AGTACT | 1 cut(s) | 2158 |
| SchI | GAGTC | 5 cut(s) | 1519, 1630, 2066, 2114, 2615 |
| ScrFI | CCNGG | 6 cut(s) | 38, 1134, 1245, 1983, 2435, 2470 |
| SduI | GDGCHC | 2 cut(s) | 1997, 2018 |
| SfaNI | GCATC | 7 cut(s) | 173, 175, 693, 876, 1428, 1450, 1573 |
| SfcI | CTRYAG | 4 cut(s) | 1391, 1559, 2160, 2228 |
| Sfr274I | CTCGAG | 1 cut(s) | 2660 |
| Sfr303I | CCGCGG | 1 cut(s) | 1222 |
| SfuI | TTCGAA | 2 cut(s) | 895, 906 |
| SgrBI | CCGCGG | 1 cut(s) | 1222 |
| SinI | GGWCC | 4 cut(s) | 89, 1931, 2298, 2395 |
| SlaI | CTCGAG | 1 cut(s) | 2660 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 81, 258, 522 |
| SmlI | CTYRAG | 5 cut(s) | 138, 1115, 2152, 2623, 2660 |
| SmoI | CTYRAG | 5 cut(s) | 138, 1115, 2152, 2623, 2660 |
| SphI | GCATGC | 3 cut(s) | 80, 257, 736 |
| SseBI | AGGCCT | 1 cut(s) | 2547 |
| SspMI | CTAG | 6 cut(s) | 813, 965, 1419, 1595, 1818, 2549 |
| StuI | AGGCCT | 1 cut(s) | 2547 |
| StyD4I | CCNGG | 6 cut(s) | 36, 1132, 1243, 1981, 2433, 2468 |
| StyI | CCWWGG | 6 cut(s) | 415, 667, 806, 1150, 1274, 2251 |
| TaaI | ACNGT | 8 cut(s) | 72, 149, 700, 1125, 1671, 1766, 1926, 1977 |
| TaqI | TCGA | 4 cut(s) | 895, 906, 1201, 2661 |
| TatI | WGTACW | 2 cut(s) | 846, 2156 |
| TauI | GCSGC | 2 cut(s) | 758, 933 |
| TfiI | GAWTC | 9 cut(s) | 626, 655, 917, 1019, 1224, 1460, 1612, 1718, 2216 |
| Tru1I | TTAA | 6 cut(s) | 500, 1073, 1116, 1832, 2181, 2280 |
| Tru9I | TTAA | 6 cut(s) | 500, 1073, 1116, 1832, 2181, 2280 |
| TscAI | CASTG | 5 cut(s) | 154, 406, 2023, 2173, 2319 |
| TspGWI | ACGGA | 3 cut(s) | 284, 1089, 2638 |
| TspRI | CASTG | 5 cut(s) | 154, 406, 2023, 2173, 2319 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1324 |
| Vha464I | CTTAAG | 1 cut(s) | 1115 |
| VpaK11BI | GGWCC | 4 cut(s) | 89, 1931, 2298, 2395 |
| VspI | ATTAAT | 1 cut(s) | 1832 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2305 |
| XapI | RAATTY | 5 cut(s) | 61, 1180, 1570, 1957, 2629 |
| XceI | RCATGY | 4 cut(s) | 80, 257, 736, 1315 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 178, 2039 |
| XhoI | CTCGAG | 1 cut(s) | 2660 |
| XmiI | GTMKAC | 1 cut(s) | 1427 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1574, 1878 |
| XspI | CTAG | 6 cut(s) | 813, 965, 1419, 1595, 1818, 2549 |
| ZrmI | AGTACT | 1 cut(s) | 2158 |
| Zsp2I | ATGCAT | 3 cut(s) | 255, 1443, 2136 |