Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 312 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 585, 1318 |
| AccI | GTMKAC | 1 cut(s) | 361 |
| AccII | CGCG | 3 cut(s) | 341, 873, 2678 |
| AclI | AACGTT | 1 cut(s) | 2055 |
| AclWI | GGATC | 5 cut(s) | 320, 519, 962, 1215, 1349 |
| AcoI | YGGCCR | 3 cut(s) | 1124, 1949, 2582 |
| AcsI | RAATTY | 1 cut(s) | 1393 |
| AcuI | CTGAAG | 2 cut(s) | 933, 1367 |
| AfaI | GTAC | 5 cut(s) | 432, 935, 943, 1310, 2399 |
| AflIII | ACRYGT | 1 cut(s) | 1773 |
| AgeI | ACCGGT | 1 cut(s) | 2739 |
| AgsI | TTSAA | 7 cut(s) | 307, 908, 1235, 1337, 2228, 2272, 2794 |
| AjiI | CACGTC | 1 cut(s) | 1776 |
| AjnI | CCWGG | 2 cut(s) | 837, 1135 |
| AleI | CACNNNNGTG | 1 cut(s) | 2387 |
| Alw21I | GWGCWC | 2 cut(s) | 72, 2108 |
| AlwI | GGATC | 5 cut(s) | 320, 519, 962, 1215, 1349 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1444 |
| Ama87I | CYCGRG | 4 cut(s) | 805, 2284, 2707, 2749 |
| ApoI | RAATTY | 1 cut(s) | 1393 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2186, 2218 |
| AsiGI | ACCGGT | 1 cut(s) | 2739 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 455 |
| AspLEI | GCGC | 3 cut(s) | 313, 2129, 2680 |
| AspS9I | GGNCC | 1 cut(s) | 89 |
| AsuC2I | CCSGG | 2 cut(s) | 1401, 2091 |
| AsuHPI | GGTGA | 6 cut(s) | 635, 781, 1185, 1770, 2246, 2616 |
| AvaI | CYCGRG | 4 cut(s) | 805, 2284, 2707, 2749 |
| AvaII | GGWCC | 1 cut(s) | 89 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 925, 958, 1589, 1622 |
| BalI | TGGCCA | 1 cut(s) | 1951 |
| BanII | GRGCYC | 1 cut(s) | 72 |
| BauI | CACGAG | 1 cut(s) | 2453 |
| BbsI | GAAGAC | 1 cut(s) | 2511 |
| Bbv12I | GWGCWC | 2 cut(s) | 72, 2108 |
| BccI | CCATC | 7 cut(s) | 800, 826, 1105, 1153, 1960, 2154, 2689 |
| BceAI | ACGGC | 2 cut(s) | 1111, 1139 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 496, 530, 1010, 1044 |
| BciT130I | CCWGG | 2 cut(s) | 839, 1137 |
| BciVI | GTATCC | 1 cut(s) | 1104 |
| BcnI | CCSGG | 2 cut(s) | 1401, 2091 |
| BfaI | CTAG | 6 cut(s) | 399, 921, 965, 1917, 2313, 2800 |
| BfmI | CTRYAG | 5 cut(s) | 753, 1029, 1323, 1445, 1965 |
| BfoI | RGCGCY | 1 cut(s) | 2130 |
| BfuI | GTATCC | 1 cut(s) | 1104 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2493 |
| Bme1390I | CCNGG | 4 cut(s) | 839, 1137, 1401, 2091 |
| Bme18I | GGWCC | 1 cut(s) | 89 |
| BmeT110I | CYCGRG | 4 cut(s) | 805, 2284, 2707, 2749 |
| BmgBI | CACGTC | 1 cut(s) | 1776 |
| BmgT120I | GGNCC | 1 cut(s) | 89 |
| BmiI | GGNNCC | 3 cut(s) | 1996, 2362, 2738 |
| BmrFI | CCNGG | 4 cut(s) | 839, 1137, 1401, 2091 |
| BmrI | ACTGGG | 1 cut(s) | 2042 |
| BmsI | GCATC | 7 cut(s) | 175, 223, 888, 1248, 1431, 2178, 2783 |
| BmuI | ACTGGG | 1 cut(s) | 2042 |
| BpiI | GAAGAC | 1 cut(s) | 2511 |
| BpmI | CTGGAG | 2 cut(s) | 1769, 2013 |
| BpuEI | CTTGAG | 4 cut(s) | 123, 477, 1869, 2681 |
| BpuMI | CCSGG | 2 cut(s) | 1401, 2091 |
| BsaBI | GATNNNNATC | 2 cut(s) | 654, 966 |
| BsaI | GGTCTC | 1 cut(s) | 1145 |
| BsaWI | WCCGGW | 2 cut(s) | 1943, 2739 |
| Bse118I | RCCGGY | 2 cut(s) | 1997, 2739 |
| Bse1I | ACTGG | 4 cut(s) | 955, 1719, 1786, 2037 |
| Bse3DI | GCAATG | 3 cut(s) | 1323, 1938, 2304 |
| Bse8I | GATNNNNATC | 2 cut(s) | 654, 966 |
| BseBI | CCWGG | 2 cut(s) | 839, 1137 |
| BseGI | GGATG | 4 cut(s) | 214, 903, 1263, 1940 |
| BseJI | GATNNNNATC | 2 cut(s) | 654, 966 |
| BseMI | GCAATG | 3 cut(s) | 1323, 1938, 2304 |
| BseNI | ACTGG | 4 cut(s) | 955, 1719, 1786, 2037 |
| BseRI | GAGGAG | 1 cut(s) | 2555 |
| BseX3I | CGGCCG | 1 cut(s) | 1124 |
| BseYI | CCCAGC | 1 cut(s) | 17 |
| BsgI | GTGCAG | 1 cut(s) | 1451 |
| Bsh1236I | CGCG | 3 cut(s) | 341, 873, 2678 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1127, 2112 |
| BshTI | ACCGGT | 1 cut(s) | 2739 |
| BsiEI | CGRYCG | 2 cut(s) | 1127, 2112 |
| BsiHKAI | GWGCWC | 2 cut(s) | 72, 2108 |
| BsiHKCI | CYCGRG | 4 cut(s) | 805, 2284, 2707, 2749 |
| BsiSI | CCGG | 6 cut(s) | 1400, 1944, 1998, 2091, 2585, 2740 |
| BslFI | GGGAC | 4 cut(s) | 338, 1031, 2026, 2049 |
| BsmBI | CGTCTC | 1 cut(s) | 880 |
| BsmFI | GGGAC | 4 cut(s) | 338, 1031, 2026, 2049 |
| BsmI | GAATGC | 1 cut(s) | 313 |
| Bso31I | GGTCTC | 1 cut(s) | 1145 |
| BsoBI | CYCGRG | 4 cut(s) | 805, 2284, 2707, 2749 |
| Bsp1286I | GDGCHC | 2 cut(s) | 72, 2108 |
| Bsp1407I | TGTACA | 1 cut(s) | 2397 |
| Bsp19I | CCATGG | 1 cut(s) | 1153 |
| BspFNI | CGCG | 3 cut(s) | 341, 873, 2678 |
| BspHI | TCATGA | 1 cut(s) | 37 |
| BspLI | GGNNCC | 3 cut(s) | 1996, 2362, 2738 |
| BspMAI | CTGCAG | 5 cut(s) | 757, 1033, 1327, 1449, 1969 |
| BspPI | GGATC | 5 cut(s) | 320, 519, 962, 1215, 1349 |
| BspTNI | GGTCTC | 1 cut(s) | 1145 |
| BsrDI | GCAATG | 3 cut(s) | 1323, 1938, 2304 |
| BsrFI | RCCGGY | 2 cut(s) | 1997, 2739 |
| BsrGI | TGTACA | 1 cut(s) | 2397 |
| BsrI | ACTGG | 4 cut(s) | 955, 1719, 1786, 2037 |
| BssAI | RCCGGY | 2 cut(s) | 1997, 2739 |
| BssSI | CACGAG | 1 cut(s) | 2453 |
| BssT1I | CCWWGG | 4 cut(s) | 465, 1046, 1153, 2579 |
| Bst2BI | CACGAG | 1 cut(s) | 2453 |
| Bst2UI | CCWGG | 2 cut(s) | 839, 1137 |
| Bst4CI | ACNGT | 9 cut(s) | 149, 303, 700, 731, 1656, 2040, 2622, 2723, 2768 |
| Bst6I | CTCTTC | 1 cut(s) | 1872 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 764, 1322, 1367, 1444 |
| BstAUI | TGTACA | 1 cut(s) | 2397 |
| BstC8I | GCNNGC | 8 cut(s) | 78, 212, 255, 1286, 2468, 2472, 2476, 2525 |
| BstDSI | CCRYGG | 5 cut(s) | 339, 579, 1127, 1153, 1253 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 39 |
| BstF5I | GGATG | 4 cut(s) | 214, 903, 1263, 1940 |
| BstFNI | CGCG | 3 cut(s) | 341, 873, 2678 |
| BstH2I | RGCGCY | 1 cut(s) | 2130 |
| BstHHI | GCGC | 3 cut(s) | 313, 2129, 2680 |
| BstMCI | CGRYCG | 2 cut(s) | 1127, 2112 |
| BstNI | CCWGG | 2 cut(s) | 839, 1137 |
| BstNSI | RCATGY | 3 cut(s) | 80, 257, 2482 |
| BstSCI | CCNGG | 4 cut(s) | 837, 1135, 1399, 2089 |
| BstSFI | CTRYAG | 5 cut(s) | 753, 1029, 1323, 1445, 1965 |
| BstUI | CGCG | 3 cut(s) | 341, 873, 2678 |
| BstV2I | GAAGAC | 1 cut(s) | 2511 |
| BstX2I | RGATCY | 3 cut(s) | 325, 511, 967 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1991 |
| BstYI | RGATCY | 3 cut(s) | 325, 511, 967 |
| BstZI | CGGCCG | 1 cut(s) | 1124 |
| BsuI | GTATCC | 1 cut(s) | 1104 |
| BtgI | CCRYGG | 5 cut(s) | 339, 579, 1127, 1153, 1253 |
| BtgZI | GCGATG | 1 cut(s) | 2586 |
| BtrI | CACGTC | 1 cut(s) | 1776 |
| BtsCI | GGATG | 4 cut(s) | 214, 903, 1263, 1940 |
| BtsIMutI | CAGTG | 2 cut(s) | 154, 1726 |
| Cac8I | GCNNGC | 8 cut(s) | 78, 212, 255, 1286, 2468, 2472, 2476, 2525 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1444 |
| CciI | TCATGA | 1 cut(s) | 37 |
| CfoI | GCGC | 3 cut(s) | 313, 2129, 2680 |
| Cfr10I | RCCGGY | 2 cut(s) | 1997, 2739 |
| Cfr13I | GGNCC | 1 cut(s) | 89 |
| Cfr42I | CCGCGG | 1 cut(s) | 342 |
| CseI | GACGC | 3 cut(s) | 862, 1704, 1949 |
| Csp6I | GTAC | 5 cut(s) | 431, 934, 942, 1309, 2398 |
| CspAI | ACCGGT | 1 cut(s) | 2739 |
| CviQI | GTAC | 5 cut(s) | 431, 934, 942, 1309, 2398 |
| EaeI | YGGCCR | 3 cut(s) | 1124, 1949, 2582 |
| EagI | CGGCCG | 1 cut(s) | 1124 |
| Eam1104I | CTCTTC | 1 cut(s) | 1872 |
| EarI | CTCTTC | 1 cut(s) | 1872 |
| Ecl136II | GAGCTC | 1 cut(s) | 70 |
| EclXI | CGGCCG | 1 cut(s) | 1124 |
| Eco130I | CCWWGG | 4 cut(s) | 465, 1046, 1153, 2579 |
| Eco147I | AGGCCT | 2 cut(s) | 744, 2658 |
| Eco24I | GRGCYC | 1 cut(s) | 72 |
| Eco31I | GGTCTC | 1 cut(s) | 1145 |
| Eco47I | GGWCC | 1 cut(s) | 89 |
| Eco52I | CGGCCG | 1 cut(s) | 1124 |
| Eco53kI | GAGCTC | 1 cut(s) | 70 |
| Eco57I | CTGAAG | 2 cut(s) | 933, 1367 |
| Eco88I | CYCGRG | 4 cut(s) | 805, 2284, 2707, 2749 |
| EcoICRI | GAGCTC | 1 cut(s) | 70 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 39 |
| EcoRII | CCWGG | 2 cut(s) | 837, 1135 |
| EcoT14I | CCWWGG | 4 cut(s) | 465, 1046, 1153, 2579 |
| EcoT22I | ATGCAT | 2 cut(s) | 255, 738 |
| EcoT38I | GRGCYC | 1 cut(s) | 72 |
| ErhI | CCWWGG | 4 cut(s) | 465, 1046, 1153, 2579 |
| Esp3I | CGTCTC | 1 cut(s) | 880 |
| FaqI | GGGAC | 4 cut(s) | 338, 1031, 2026, 2049 |
| FauI | CCCGC | 2 cut(s) | 346, 2145 |
| FblI | GTMKAC | 1 cut(s) | 361 |
| FokI | GGATG | 4 cut(s) | 201, 910, 1270, 1927 |
| FriOI | GRGCYC | 1 cut(s) | 72 |
| FspBI | CTAG | 6 cut(s) | 399, 921, 965, 1917, 2313, 2800 |
| FspI | TGCGCA | 1 cut(s) | 312 |
| GlaI | GCGC | 3 cut(s) | 312, 2128, 2679 |
| GsaI | CCCAGC | 1 cut(s) | 21 |
| GsuI | CTGGAG | 2 cut(s) | 1769, 2013 |
| HaeII | RGCGCY | 1 cut(s) | 2130 |
| HapII | CCGG | 6 cut(s) | 1400, 1944, 1998, 2091, 2585, 2740 |
| HgaI | GACGC | 3 cut(s) | 862, 1704, 1949 |
| HhaI | GCGC | 3 cut(s) | 313, 2129, 2680 |
| Hin6I | GCGC | 3 cut(s) | 311, 2127, 2678 |
| HinP1I | GCGC | 3 cut(s) | 311, 2127, 2678 |
| HincII | GTYRAC | 1 cut(s) | 2542 |
| HindII | GTYRAC | 1 cut(s) | 2542 |
| HindIII | AAGCTT | 1 cut(s) | 1816 |
| HpaII | CCGG | 6 cut(s) | 1400, 1944, 1998, 2091, 2585, 2740 |
| HphI | GGTGA | 6 cut(s) | 635, 781, 1185, 1770, 2246, 2616 |
| Hpy166II | GTNNAC | 7 cut(s) | 152, 362, 1193, 1249, 1309, 2398, 2542 |
| Hpy188III | TCNNGA | 9 cut(s) | 38, 494, 643, 965, 1337, 1619, 1886, 1992, 2707 |
| Hpy8I | GTNNAC | 7 cut(s) | 152, 362, 1193, 1249, 1309, 2398, 2542 |
| Hpy99I | CGWCG | 3 cut(s) | 933, 1282, 2558 |
| HpyCH4III | ACNGT | 9 cut(s) | 149, 303, 700, 731, 1656, 2040, 2622, 2723, 2768 |
| HpyCH4IV | ACGT | 4 cut(s) | 1277, 1775, 2055, 2556 |
| HpySE526I | ACGT | 4 cut(s) | 1277, 1775, 2055, 2556 |
| HspAI | GCGC | 3 cut(s) | 311, 2127, 2678 |
| KspI | CCGCGG | 1 cut(s) | 342 |
| LmnI | GCTCC | 5 cut(s) | 588, 1911, 1994, 2026, 2709 |
| LweI | GCATC | 7 cut(s) | 175, 223, 888, 1248, 1431, 2178, 2783 |
| MaeI | CTAG | 6 cut(s) | 399, 921, 965, 1917, 2313, 2800 |
| MaeII | ACGT | 4 cut(s) | 1277, 1775, 2055, 2556 |
| MflI | RGATCY | 3 cut(s) | 325, 511, 967 |
| MhlI | GDGCHC | 2 cut(s) | 72, 2108 |
| MlsI | TGGCCA | 1 cut(s) | 1951 |
| MluCI | AATT | 9 cut(s) | 61, 199, 344, 659, 985, 1393, 1748, 2266, 2498 |
| MluNI | TGGCCA | 1 cut(s) | 1951 |
| MlyI | GAGTC | 5 cut(s) | 620, 823, 1209, 2169, 2231 |
| MmeI | TCCRAC | 3 cut(s) | 94, 566, 2712 |
| Mox20I | TGGCCA | 1 cut(s) | 1951 |
| Mph1103I | ATGCAT | 2 cut(s) | 255, 738 |
| MroXI | GAANNNNTTC | 1 cut(s) | 455 |
| MscI | TGGCCA | 1 cut(s) | 1951 |
| MseI | TTAA | 7 cut(s) | 24, 60, 500, 1076, 1119, 1161, 2613 |
| MslI | CAYNNNNRTG | 4 cut(s) | 81, 258, 522, 2387 |
| Msp20I | TGGCCA | 1 cut(s) | 1951 |
| MspA1I | CMGCKG | 3 cut(s) | 17, 341, 1328 |
| MspI | CCGG | 6 cut(s) | 1400, 1944, 1998, 2091, 2585, 2740 |
| MspR9I | CCNGG | 4 cut(s) | 839, 1137, 1401, 2091 |
| Mva1269I | GAATGC | 1 cut(s) | 313 |
| MvaI | CCWGG | 2 cut(s) | 839, 1137 |
| MvnI | CGCG | 3 cut(s) | 341, 873, 2678 |
| NciI | CCSGG | 2 cut(s) | 1401, 2091 |
| NcoI | CCATGG | 1 cut(s) | 1153 |
| NlaIV | GGNNCC | 3 cut(s) | 1996, 2362, 2738 |
| NmeAIII | GCCGAG | 3 cut(s) | 464, 1290, 2547 |
| NmuCI | GTSAC | 7 cut(s) | 143, 623, 725, 1776, 2234, 2622, 2723 |
| NsbI | TGCGCA | 1 cut(s) | 312 |
| NsiI | ATGCAT | 2 cut(s) | 255, 738 |
| NspI | RCATGY | 3 cut(s) | 80, 257, 2482 |
| OliI | CACNNNNGTG | 1 cut(s) | 2387 |
| PaeI | GCATGC | 2 cut(s) | 80, 257 |
| PagI | TCATGA | 1 cut(s) | 37 |
| PceI | AGGCCT | 2 cut(s) | 744, 2658 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 685 |
| PctI | GAATGC | 1 cut(s) | 313 |
| PdmI | GAANNNNTTC | 1 cut(s) | 455 |
| PfeI | GAWTC | 9 cut(s) | 655, 786, 917, 1022, 1892, 1973, 2171, 2327, 2755 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 585, 1318 |
| PinAI | ACCGGT | 1 cut(s) | 2739 |
| Ple19I | CGATCG | 1 cut(s) | 2112 |
| PleI | GAGTC | 5 cut(s) | 620, 822, 1209, 2168, 2231 |
| PpsI | GAGTC | 5 cut(s) | 620, 822, 1209, 2168, 2231 |
| Psp124BI | GAGCTC | 1 cut(s) | 72 |
| Psp1406I | AACGTT | 1 cut(s) | 2055 |
| Psp6I | CCWGG | 2 cut(s) | 837, 1135 |
| PspFI | CCCAGC | 1 cut(s) | 17 |
| PspGI | CCWGG | 2 cut(s) | 837, 1135 |
| PspN4I | GGNNCC | 3 cut(s) | 1996, 2362, 2738 |
| PspPI | GGNCC | 1 cut(s) | 89 |
| PstI | CTGCAG | 5 cut(s) | 757, 1033, 1327, 1449, 1969 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1444 |
| PsuI | RGATCY | 3 cut(s) | 325, 511, 967 |
| PvuI | CGATCG | 1 cut(s) | 2112 |
| PvuII | CAGCTG | 2 cut(s) | 17, 1328 |
| RsaI | GTAC | 5 cut(s) | 432, 935, 943, 1310, 2399 |
| RsaNI | GTAC | 5 cut(s) | 431, 934, 942, 1309, 2398 |
| RseI | CAYNNNNRTG | 4 cut(s) | 81, 258, 522, 2387 |
| SacI | GAGCTC | 1 cut(s) | 72 |
| SacII | CCGCGG | 1 cut(s) | 342 |
| SaqAI | TTAA | 7 cut(s) | 24, 60, 500, 1076, 1119, 1161, 2613 |
| Sau96I | GGNCC | 1 cut(s) | 89 |
| SchI | GAGTC | 5 cut(s) | 620, 823, 1209, 2169, 2231 |
| ScrFI | CCNGG | 4 cut(s) | 839, 1137, 1401, 2091 |
| SduI | GDGCHC | 2 cut(s) | 72, 2108 |
| SfaNI | GCATC | 7 cut(s) | 175, 223, 888, 1248, 1431, 2178, 2783 |
| SfcI | CTRYAG | 5 cut(s) | 753, 1029, 1323, 1445, 1965 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 2493 |
| Sfr303I | CCGCGG | 1 cut(s) | 342 |
| SgrBI | CCGCGG | 1 cut(s) | 342 |
| SinI | GGWCC | 1 cut(s) | 89 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 81, 258, 522, 2387 |
| SmlI | CTYRAG | 4 cut(s) | 138, 492, 1884, 2660 |
| SmoI | CTYRAG | 4 cut(s) | 138, 492, 1884, 2660 |
| SphI | GCATGC | 2 cut(s) | 80, 257 |
| Sse9I | AATT | 9 cut(s) | 61, 199, 344, 659, 985, 1393, 1748, 2266, 2498 |
| SseBI | AGGCCT | 2 cut(s) | 744, 2658 |
| SspMI | CTAG | 6 cut(s) | 399, 921, 965, 1917, 2313, 2800 |
| SstI | GAGCTC | 1 cut(s) | 72 |
| StuI | AGGCCT | 2 cut(s) | 744, 2658 |
| StyD4I | CCNGG | 4 cut(s) | 837, 1135, 1399, 2089 |
| StyI | CCWWGG | 4 cut(s) | 465, 1046, 1153, 2579 |
| TaaI | ACNGT | 9 cut(s) | 149, 303, 700, 731, 1656, 2040, 2622, 2723, 2768 |
| TaiI | ACGT | 4 cut(s) | 1280, 1778, 2058, 2559 |
| TaqI | TCGA | 6 cut(s) | 167, 1210, 2108, 2112, 2490, 2697 |
| TaqII | GACCGA | 1 cut(s) | 2559 |
| TasI | AATT | 9 cut(s) | 61, 199, 344, 659, 985, 1393, 1748, 2266, 2498 |
| TatI | WGTACW | 1 cut(s) | 2397 |
| TauI | GCSGC | 2 cut(s) | 773, 1438 |
| TfiI | GAWTC | 9 cut(s) | 655, 786, 917, 1022, 1892, 1973, 2171, 2327, 2755 |
| Tru1I | TTAA | 7 cut(s) | 24, 60, 500, 1076, 1119, 1161, 2613 |
| Tru9I | TTAA | 7 cut(s) | 24, 60, 500, 1076, 1119, 1161, 2613 |
| TscAI | CASTG | 2 cut(s) | 154, 1726 |
| TseFI | GTSAC | 7 cut(s) | 143, 623, 725, 1776, 2234, 2622, 2723 |
| Tsp45I | GTSAC | 7 cut(s) | 143, 623, 725, 1776, 2234, 2622, 2723 |
| TspGWI | ACGGA | 6 cut(s) | 432, 1410, 1698, 1848, 2008, 2211 |
| TspRI | CASTG | 2 cut(s) | 154, 1726 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 585, 1318 |
| VpaK11BI | GGWCC | 1 cut(s) | 89 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 39 |
| XapI | RAATTY | 1 cut(s) | 1393 |
| XbaI | TCTAGA | 1 cut(s) | 964 |
| XceI | RCATGY | 3 cut(s) | 80, 257, 2482 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2153 |
| XmiI | GTMKAC | 1 cut(s) | 361 |
| XmnI | GAANNNNTTC | 1 cut(s) | 455 |
| XspI | CTAG | 6 cut(s) | 399, 921, 965, 1917, 2313, 2800 |
| Zsp2I | ATGCAT | 2 cut(s) | 255, 738 |