Prupe.4G086000_v2.0.a1

hmr,ptac12

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
4234022 .. 4239844
5823 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G086000.4

Sequence Viewer

Length: 1617 bp
ATGGCATCTATATCAGGAACTTGGCTGTATCAAGCTTTTGGTGTGCTTCTGGCAGATAGAGGATTGAAAGGTGCAGTCTTAGCACAGAGCCATGCTACTGGGAACCCATGTTTCAATCATTTCAAGGCATCAACTGTAAGTTCATTTCCAGTTGGATTATTCCAAGTTAGAGTTGGCTCGAATATATCACCAAAGAGGGCACCTTTACTTCCTTCTATAAAGTGTGAGAAGAAGGATGATTCCTCCAAAGATTTCTCTATTGAGCGTCCACCTTATGATAGCTATATGGACTCAACATCTGGGCAGCTTGAACCTGCATCAGGTGCTCGTGCCAGCATTCCAGGCCAGGATTATTGGCCTGAAGGCACTGCAAGTCGAGTTAGGGCTGCCAGGGCTCCTGAGCCCACTGGTAAATCAGTTGGATCTCCATCTTATGGTAGAAATCCTGGAAGTAGGAGGAGGAAGAATAAAACATCAGTTGCTGCTGGTGAATCTTCTGAACCAAGTGTAGAATCAAGTGGTACACTGGCAGTGGAACTGGAACCAGAGACTTCAGAGGACACACTAGAGGATCCTAAAGATTTCCCATCTGAATATGTTGTCTATCAGACTGAACCTGAAAAAGAAGAAGAAACAGGATTTGAACTAGACAAGAAACTTGGACGTCCTCATCCCTTTATTGATCCAGAAACAAAGAAGCCACTAGAGGAGCCACTTACGAGTGATGAACTATGGTGGAACTGGAAAAAACCAGACAAGGAACAATGGTCCAGATGGCAAAGGAGACGACCAGATCTTGAAACGGTTTTTCTCAAAGCAATGGCAGAGACTGGGCAAGTAAAGCTTTATGGTGAACATCCAACATTGACTGAAACTTCACTTTACAGAGCAAGACGACATCTTTTCAAGGAAGAGAGGCTTCAAGCAGAACAAGAGAAGCTTGATAGAATAGGTCCACTTGCATACTATTCAGAATGGGTAAAAGCGTGGAAAAGAGACACTTCTCGAGAAGCTGTTCAGAAACATTTTGAAGAGACTGGTGAAAATGAAACAACCCAACTAATTGAAATGTTTTCTCAACAAACTGATCGAGAGTATCGCATAATGATGGGAACTGATATCCGTATACGCAGGGACCCCATAGCGATGCGTATGCGAGAGGATCAAATAAAGCAAATATGGGGCGGAGATCCTGTTTACCCAACTGTGAACTATATTCAAGATCCAGATGAAGTGATTGATTACAGAGGCGCAGATTTTCATGAACCAACACCAAATATGCTGTCTTTTCTGAAGGAGCATGGAAAAATCATATCAAGGGAGGAGATTGAGAAAATTCTGTCAAAAGAGAAGACCGAAGAGCTTGAGGCACCTGATATGGATGAAGCTATGGCACAAGCTGTTGACATTGGTGAAGATGATGAAGGAGAAGATAGTGAGGCCGAGGTTGATGAACAAGGAGAGAAAATCACACGCAATTGGAGTGTTTTGAAAACTACTCCTGGGCTTACCAAGTCAAAGGGTAAACCCAAAAAGGACGCCTTGTCTTTGGAAGAGGCTGTAGACGATTCAGAGAACTTGACAGATTTTCTGATGGACTTTGAGGAAGAAGTGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

539

Amino Acids

61.13

Weight (kDa)

4.86

Isoelectric Point (pI)

44.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 667
Acc36I ACCTGC 1 cut(s) 322
AccB1I GGYRCC 2 cut(s) 199, 1369
AccB7I CCANNNNNTGG 1 cut(s) 434
AccI GTMKAC 2 cut(s) 1126, 1563
AciI CCGC 1 cut(s) 1185
AclWI GGATC 7 cut(s) 430, 566, 579, 677, 1170, 1184, 1217
AcsI RAATTY 1 cut(s) 1335
AcuI CTGAAG 3 cut(s) 381, 537, 1313
AcyI GRCGYC 2 cut(s) 664, 1539
AfaI GTAC 1 cut(s) 523
AfiI CCNNNNNNNGG 2 cut(s) 320, 434
AhdI GACNNNNNGTC 1 cut(s) 1543
AjnI CCWGG 5 cut(s) 340, 345, 389, 445, 1501
AluBI AGCT 9 cut(s) 35, 282, 307, 844, 940, 1013, 1363, 1388, 1400
AluI AGCT 9 cut(s) 35, 282, 307, 844, 940, 1013, 1363, 1388, 1400
Alw21I GWGCWC 1 cut(s) 328
Alw26I GTCTC 5 cut(s) 542, 778, 821, 990, 1028
AlwI GGATC 7 cut(s) 430, 566, 579, 677, 1170, 1184, 1217
AlwNI CAGNNNCTG 2 cut(s) 482, 830
Ama87I CYCGRG 1 cut(s) 1005
AoxI GGCC 3 cut(s) 343, 356, 1440
ApeKI GCWGC 3 cut(s) 304, 386, 482
ApoI RAATTY 1 cut(s) 1335
ArsI GACNNNNNNTTYG 2 cut(s) 1268, 1300
Asp700I GAANNNNTTC 1 cut(s) 1014
AspLEI GCGC 1 cut(s) 1253
AspS9I GGNCC 3 cut(s) 768, 953, 1135
AsuHPI GGTGA 5 cut(s) 180, 500, 863, 1052, 1424
AvaI CYCGRG 1 cut(s) 1005
AvaII GGWCC 3 cut(s) 768, 953, 1135
BaeGI GKGCMC 1 cut(s) 202
BamHI GGATCC 1 cut(s) 571
BanI GGYRCC 2 cut(s) 199, 1369
BanII GRGCYC 2 cut(s) 397, 405
BauI CACGAG 1 cut(s) 327
BbsI GAAGAC 1 cut(s) 1358
Bbv12I GWGCWC 1 cut(s) 328
BbvI GCAGC 3 cut(s) 316, 373, 469
BccI CCATC 5 cut(s) 436, 595, 768, 1102, 1588
BcgI CGANNNNNNTGC 2 cut(s) 1135, 1169
BciT130I CCWGG 5 cut(s) 342, 347, 391, 447, 1503
BcoDI GTCTC 5 cut(s) 542, 778, 821, 990, 1028
BfaI CTAG 3 cut(s) 566, 647, 704
BfmI CTRYAG 1 cut(s) 1560
BfuAI ACCTGC 1 cut(s) 322
BglII AGATCT 1 cut(s) 793
BisI GCNGC 3 cut(s) 305, 387, 483
BlsI GCNGC 3 cut(s) 306, 388, 484
Bme1390I CCNGG 5 cut(s) 342, 347, 391, 447, 1503
Bme18I GGWCC 3 cut(s) 768, 953, 1135
BmeRI GACNNNNNGTC 1 cut(s) 1543
BmeT110I CYCGRG 1 cut(s) 1005
BmgT120I GGNCC 3 cut(s) 768, 953, 1135
BmiI GGNNCC 9 cut(s) 104, 201, 396, 543, 573, 711, 1136, 1137, 1371
BmrFI CCNGG 5 cut(s) 342, 347, 391, 447, 1503
BmrI ACTGGG 2 cut(s) 108, 840
BmsI GCATC 4 cut(s) 14, 137, 326, 1137
BmuI ACTGGG 2 cut(s) 108, 840
BpiI GAAGAC 1 cut(s) 1358
Bpu10I CCTNAGC 1 cut(s) 399
BpuEI CTTGAG 1 cut(s) 1385
BsaBI GATNNNNATC 1 cut(s) 427
BsaHI GRCGYC 2 cut(s) 664, 1539
BsaJI CCNNGG 3 cut(s) 390, 1443, 1502
BsaXI ACNNNNNCTCC 2 cut(s) 1179, 1209
Bsc4I CCNNNNNNNGG 2 cut(s) 320, 434
Bse1I ACTGG 8 cut(s) 103, 149, 412, 531, 543, 746, 835, 1042
Bse3DI GCAATG 1 cut(s) 825
Bse8I GATNNNNATC 1 cut(s) 427
BseBI CCWGG 5 cut(s) 342, 347, 391, 447, 1503
BseDI CCNNGG 3 cut(s) 390, 1443, 1502
BseGI GGATG 4 cut(s) 241, 670, 856, 1387
BseJI GATNNNNATC 1 cut(s) 427
BseLI CCNNNNNNNGG 2 cut(s) 320, 434
BseMI GCAATG 1 cut(s) 825
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 8 cut(s) 103, 149, 412, 531, 543, 746, 835, 1042
BseRI GAGGAG 3 cut(s) 472, 722, 1337
BseSI GKGCMC 1 cut(s) 202
BseXI GCAGC 3 cut(s) 316, 373, 469
BsgI GTGCAG 1 cut(s) 93
BshFI GGCC 3 cut(s) 345, 358, 1442
BshNI GGYRCC 2 cut(s) 199, 1369
BsiHKAI GWGCWC 1 cut(s) 328
BsiHKCI CYCGRG 1 cut(s) 1005
BslFI GGGAC 1 cut(s) 1148
BslI CCNNNNNNNGG 2 cut(s) 320, 434
BsmAI GTCTC 5 cut(s) 542, 778, 821, 990, 1028
BsmBI CGTCTC 1 cut(s) 778
BsmFI GGGAC 1 cut(s) 1148
BsmI GAATGC 1 cut(s) 336
BsnI GGCC 3 cut(s) 345, 358, 1442
BsoBI CYCGRG 1 cut(s) 1005
Bsp1286I GDGCHC 4 cut(s) 202, 328, 397, 405
Bsp143I GATC 8 cut(s) 422, 571, 682, 793, 1087, 1162, 1189, 1222
BspACI CCGC 1 cut(s) 1185
BspANI GGCC 3 cut(s) 345, 358, 1442
BspCNI CTCAG 1 cut(s) 391
BspHI TCATGA 1 cut(s) 1261
BspLI GGNNCC 9 cut(s) 104, 201, 396, 543, 573, 711, 1136, 1137, 1371
BspMI ACCTGC 1 cut(s) 322
BspPI GGATC 7 cut(s) 430, 566, 579, 677, 1170, 1184, 1217
BspQI GCTCTTC 1 cut(s) 1353
BspT107I GGYRCC 2 cut(s) 199, 1369
BsrDI GCAATG 1 cut(s) 825
BsrI ACTGG 8 cut(s) 103, 149, 412, 531, 543, 746, 835, 1042
BssECI CCNNGG 3 cut(s) 390, 1443, 1502
BssMI GATC 8 cut(s) 422, 571, 682, 793, 1087, 1162, 1189, 1222
BssNAI GTATAC 1 cut(s) 1127
BssNI GRCGYC 2 cut(s) 664, 1539
BssSI CACGAG 1 cut(s) 327
Bst1107I GTATAC 1 cut(s) 1127
Bst2BI CACGAG 1 cut(s) 327
Bst2UI CCWGG 5 cut(s) 342, 347, 391, 447, 1503
Bst4CI ACNGT 3 cut(s) 136, 805, 1207
Bst6I CTCTTC 4 cut(s) 906, 1026, 1353, 1548
BstACI GRCGYC 2 cut(s) 664, 1539
BstAPI GCANNNNNTGC 1 cut(s) 323
BstC8I GCNNGC 1 cut(s) 334
BstDEI CTNAG 2 cut(s) 79, 399
BstENI CCTNNNNNAGG 1 cut(s) 318
BstF5I GGATG 4 cut(s) 241, 670, 856, 1387
BstHHI GCGC 1 cut(s) 1253
BstKTI GATC 8 cut(s) 425, 574, 685, 796, 1090, 1165, 1192, 1225
BstMAI GTCTC 5 cut(s) 542, 778, 821, 990, 1028
BstMBI GATC 8 cut(s) 422, 571, 682, 793, 1087, 1162, 1189, 1222
BstMWI GCNNNNNNNGC 5 cut(s) 80, 323, 342, 392, 841
BstNI CCWGG 5 cut(s) 342, 347, 391, 447, 1503
BstSCI CCNGG 5 cut(s) 340, 345, 389, 445, 1501
BstSFI CTRYAG 1 cut(s) 1560
BstSLI GKGCMC 1 cut(s) 202
BstV1I GCAGC 3 cut(s) 316, 373, 469
BstV2I GAAGAC 1 cut(s) 1358
BstX2I RGATCY 5 cut(s) 422, 571, 793, 1189, 1222
BstXI CCANNNNNNTGG 1 cut(s) 98
BstYI RGATCY 5 cut(s) 422, 571, 793, 1189, 1222
BstZ17I GTATAC 1 cut(s) 1127
BsuRI GGCC 3 cut(s) 345, 358, 1442
BtgZI GCGATG 1 cut(s) 1160
BtsCI GGATG 4 cut(s) 241, 670, 856, 1387
BtsI GCAGTG 2 cut(s) 366, 537
BtsIMutI CAGTG 4 cut(s) 366, 405, 524, 537
BveI ACCTGC 1 cut(s) 322
Cac8I GCNNGC 1 cut(s) 334
CaiI CAGNNNCTG 2 cut(s) 482, 830
CciI TCATGA 1 cut(s) 1261
CfoI GCGC 1 cut(s) 1253
Cfr13I GGNCC 3 cut(s) 768, 953, 1135
CseI GACGC 2 cut(s) 254, 1547
Csp6I GTAC 1 cut(s) 522
CviAII CATG 4 cut(s) 92, 108, 1262, 1301
CviQI GTAC 1 cut(s) 522
DdeI CTNAG 2 cut(s) 79, 399
DpnI GATC 8 cut(s) 424, 573, 684, 795, 1089, 1164, 1191, 1224
DpnII GATC 8 cut(s) 422, 571, 682, 793, 1087, 1162, 1189, 1222
DriI GACNNNNNGTC 1 cut(s) 1543
Eam1104I CTCTTC 4 cut(s) 906, 1026, 1353, 1548
Eam1105I GACNNNNNGTC 1 cut(s) 1543
EarI CTCTTC 4 cut(s) 906, 1026, 1353, 1548
EciI GGCGGA 1 cut(s) 1200
Eco24I GRGCYC 2 cut(s) 397, 405
Eco32I GATATC 1 cut(s) 1120
Eco47I GGWCC 3 cut(s) 768, 953, 1135
Eco57I CTGAAG 3 cut(s) 381, 537, 1313
Eco88I CYCGRG 1 cut(s) 1005
EcoNI CCTNNNNNAGG 1 cut(s) 318
EcoO109I RGGNCCY 1 cut(s) 1135
EcoRII CCWGG 5 cut(s) 340, 345, 389, 445, 1501
EcoRV GATATC 1 cut(s) 1120
EcoT38I GRGCYC 2 cut(s) 397, 405
Esp3I CGTCTC 1 cut(s) 778
FaeI CATG 4 cut(s) 95, 111, 1265, 1304
FaqI GGGAC 1 cut(s) 1148
FatI CATG 4 cut(s) 91, 107, 1261, 1300
FblI GTMKAC 2 cut(s) 1126, 1563
Fnu4HI GCNGC 3 cut(s) 305, 387, 483
FokI GGATG 4 cut(s) 248, 657, 843, 1394
FriOI GRGCYC 2 cut(s) 397, 405
Fsp4HI GCNGC 3 cut(s) 305, 387, 483
FspBI CTAG 3 cut(s) 566, 647, 704
GlaI GCGC 1 cut(s) 1252
GluI GCNGC 3 cut(s) 305, 387, 483
HaeIII GGCC 3 cut(s) 345, 358, 1442
HgaI GACGC 2 cut(s) 254, 1547
HhaI GCGC 1 cut(s) 1253
Hin1I GRCGYC 2 cut(s) 664, 1539
Hin1II CATG 4 cut(s) 95, 111, 1265, 1304
Hin6I GCGC 1 cut(s) 1251
HinP1I GCGC 1 cut(s) 1251
HincII GTYRAC 1 cut(s) 1405
HindII GTYRAC 1 cut(s) 1405
HindIII AAGCTT 3 cut(s) 33, 842, 938
HinfI GANTC 5 cut(s) 239, 290, 491, 512, 1568
HphI GGTGA 5 cut(s) 180, 500, 863, 1052, 1424
Hpy188I TCNGA 9 cut(s) 499, 556, 592, 609, 973, 1020, 1293, 1573, 1593
HpyAV CCTTC 5 cut(s) 222, 226, 356, 1288, 1418
HpyCH4III ACNGT 3 cut(s) 136, 805, 1207
HpyCH4IV ACGT 1 cut(s) 664
HpyCH4V TGCA 4 cut(s) 74, 317, 371, 962
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 323, 342, 392, 841
HpyF3I CTNAG 2 cut(s) 79, 399
HpySE526I ACGT 1 cut(s) 664
Hsp92I GRCGYC 2 cut(s) 664, 1539
Hsp92II CATG 4 cut(s) 95, 111, 1265, 1304
HspAI GCGC 1 cut(s) 1251
KflI GGGWCCC 1 cut(s) 1135
Kzo9I GATC 8 cut(s) 422, 571, 682, 793, 1087, 1162, 1189, 1222
LguI GCTCTTC 1 cut(s) 1353
LmnI GCTCC 3 cut(s) 400, 709, 1297
Lsp1109I GCAGC 3 cut(s) 316, 373, 469
LweI GCATC 4 cut(s) 14, 137, 326, 1137
MaeI CTAG 3 cut(s) 566, 647, 704
MaeII ACGT 1 cut(s) 664
MalI GATC 8 cut(s) 424, 573, 684, 795, 1089, 1164, 1191, 1224
MboI GATC 8 cut(s) 422, 571, 682, 793, 1087, 1162, 1189, 1222
MfeI CAATTG 1 cut(s) 1477
MflI RGATCY 5 cut(s) 422, 571, 793, 1189, 1222
MhlI GDGCHC 4 cut(s) 202, 328, 397, 405
MluCI AATT 3 cut(s) 1062, 1335, 1477
MlyI GAGTC 1 cut(s) 284
MmeI TCCRAC 3 cut(s) 133, 400, 884
MroXI GAANNNNTTC 1 cut(s) 1014
MslI CAYNNNNRTG 2 cut(s) 1106, 1145
MspR9I CCNGG 5 cut(s) 342, 347, 391, 447, 1503
MunI CAATTG 1 cut(s) 1477
Mva1269I GAATGC 1 cut(s) 336
MvaI CCWGG 5 cut(s) 342, 347, 391, 447, 1503
MwoI GCNNNNNNNGC 5 cut(s) 80, 323, 342, 392, 841
NdeII GATC 8 cut(s) 422, 571, 682, 793, 1087, 1162, 1189, 1222
NlaIII CATG 4 cut(s) 95, 111, 1265, 1304
NlaIV GGNNCC 9 cut(s) 104, 201, 396, 543, 573, 711, 1136, 1137, 1371
NmeAIII GCCGAG 1 cut(s) 1468
PaeR7I CTCGAG 1 cut(s) 1005
PagI TCATGA 1 cut(s) 1261
PciSI GCTCTTC 1 cut(s) 1353
PctI GAATGC 1 cut(s) 336
PdmI GAANNNNTTC 1 cut(s) 1014
PfeI GAWTC 4 cut(s) 239, 491, 512, 1568
PflMI CCANNNNNTGG 1 cut(s) 434
PfoI TCCNGGA 1 cut(s) 445
PkrI GCNGC 3 cut(s) 306, 388, 484
PleI GAGTC 1 cut(s) 284
PpsI GAGTC 1 cut(s) 284
PpuMI RGGWCCY 1 cut(s) 1135
Psp5II RGGWCCY 1 cut(s) 1135
Psp6I CCWGG 5 cut(s) 340, 345, 389, 445, 1501
PspGI CCWGG 5 cut(s) 340, 345, 389, 445, 1501
PspN4I GGNNCC 9 cut(s) 104, 201, 396, 543, 573, 711, 1136, 1137, 1371
PspPI GGNCC 3 cut(s) 768, 953, 1135
PspPPI RGGWCCY 1 cut(s) 1135
PstNI CAGNNNCTG 2 cut(s) 482, 830
PsuI RGATCY 5 cut(s) 422, 571, 793, 1189, 1222
RsaI GTAC 1 cut(s) 523
RsaNI GTAC 1 cut(s) 522
RseI CAYNNNNRTG 2 cut(s) 1106, 1145
SapI GCTCTTC 1 cut(s) 1353
SatI GCNGC 3 cut(s) 305, 387, 483
Sau3AI GATC 8 cut(s) 422, 571, 682, 793, 1087, 1162, 1189, 1222
Sau96I GGNCC 3 cut(s) 768, 953, 1135
SchI GAGTC 1 cut(s) 284
ScrFI CCNGG 5 cut(s) 342, 347, 391, 447, 1503
SduI GDGCHC 4 cut(s) 202, 328, 397, 405
SfaNI GCATC 4 cut(s) 14, 137, 326, 1137
SfcI CTRYAG 1 cut(s) 1560
Sfr274I CTCGAG 1 cut(s) 1005
SinI GGWCC 3 cut(s) 768, 953, 1135
SlaI CTCGAG 1 cut(s) 1005
SmiMI CAYNNNNRTG 2 cut(s) 1106, 1145
SmlI CTYRAG 2 cut(s) 1005, 1364
SmoI CTYRAG 2 cut(s) 1005, 1364
Sse9I AATT 3 cut(s) 1062, 1335, 1477
SsiI CCGC 1 cut(s) 1185
SspMI CTAG 3 cut(s) 566, 647, 704
StyD4I CCNGG 5 cut(s) 340, 345, 389, 445, 1501
TaaI ACNGT 3 cut(s) 136, 805, 1207
TaiI ACGT 1 cut(s) 667
TaqI TCGA 4 cut(s) 179, 376, 1006, 1090
TaqII GACCGA 1 cut(s) 1370
TasI AATT 3 cut(s) 1062, 1335, 1477
TfiI GAWTC 4 cut(s) 239, 491, 512, 1568
TscAI CASTG 4 cut(s) 373, 412, 531, 537
TseI GCWGC 3 cut(s) 304, 386, 482
TspDTI ATGAA 9 cut(s) 132, 741, 1062, 1245, 1250, 1278, 1398, 1437, 1467
TspGWI ACGGA 1 cut(s) 1112
TspRI CASTG 4 cut(s) 373, 412, 531, 537
Van91I CCANNNNNTGG 1 cut(s) 434
VpaK11BI GGWCC 3 cut(s) 768, 953, 1135
XagI CCTNNNNNAGG 1 cut(s) 318
XapI RAATTY 1 cut(s) 1335
XcmI CCANNNNNNNNNTGG 1 cut(s) 170
XhoI CTCGAG 1 cut(s) 1005
XmiI GTMKAC 2 cut(s) 1126, 1563
XmnI GAANNNNTTC 1 cut(s) 1014
XspI CTAG 3 cut(s) 566, 647, 704
ZraI GACGTC 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.