hmr,ptac12
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G34640 |
| fragaria_vesca | FvH4_3g05000 FvH4_3g05000 |
| malus_domestica | MD05G1278900.v1.1 MD10G1257800.v1.1 |
| prunus_persica | Prupe.4G086000_v2.0.a1 Prupe.4G086000_v2.0.a1 Prupe.4G086000_v2.0.a1 Prupe.4G086000_v2.0.a1 |
| pyrus_communis | pycom05g25940 pycom10g21400 |
| rosa_chinensis | RchiOBHm_Chr5g0014971 |
| rosa_laevigata | RLG00000032156 |
| rosa_multiflora | Rmu_sc0004889.1_g000013 |
| rosa_roxburghii | Rroxscaffold_1G00061610 |
| rosa_rugosa | Rorug05G0022200 |
| rosa_samantha | Rh5AG117600 Rh5BG114800 Rh5CG126100 Rh5DG114100 |
| rosa_wichuraiana | Rw5G010130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 391 |
| AatII | GACGTC | 1 cut(s) | 649 |
| Acc36I | ACCTGC | 2 cut(s) | 301, 808 |
| AccB1I | GGYRCC | 2 cut(s) | 178, 1351 |
| AccI | GTMKAC | 2 cut(s) | 1108, 1548 |
| AccII | CGCG | 1 cut(s) | 1235 |
| AciI | CCGC | 3 cut(s) | 908, 1167, 1235 |
| AclWI | GGATC | 6 cut(s) | 416, 548, 561, 1152, 1166, 1199 |
| AcsI | RAATTY | 1 cut(s) | 1317 |
| AcuI | CTGAAG | 3 cut(s) | 360, 519, 1295 |
| AcyI | GRCGYC | 2 cut(s) | 646, 1352 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 299, 413 |
| AflIII | ACRYGT | 1 cut(s) | 1596 |
| AgsI | TTSAA | 8 cut(s) | 94, 103, 290, 889, 905, 1049, 1202, 1474 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1528 |
| AjiI | CACGTC | 1 cut(s) | 1597 |
| AjnI | CCWGG | 5 cut(s) | 13, 319, 368, 424, 627 |
| AluBI | AGCT | 8 cut(s) | 286, 350, 826, 995, 1309, 1345, 1489, 1544 |
| AluI | AGCT | 8 cut(s) | 286, 350, 826, 995, 1309, 1345, 1489, 1544 |
| Alw21I | GWGCWC | 2 cut(s) | 307, 1284 |
| Alw26I | GTCTC | 6 cut(s) | 61, 238, 760, 803, 913, 1010 |
| AlwI | GGATC | 6 cut(s) | 416, 548, 561, 1152, 1166, 1199 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 461, 599, 812 |
| Ama87I | CYCGRG | 1 cut(s) | 987 |
| AoxI | GGCC | 2 cut(s) | 335, 770 |
| ApeKI | GCWGC | 3 cut(s) | 283, 365, 461 |
| ApoI | RAATTY | 1 cut(s) | 1317 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 900, 996 |
| AspLEI | GCGC | 2 cut(s) | 1235, 1354 |
| AspS9I | GGNCC | 4 cut(s) | 750, 771, 935, 1117 |
| AsuHPI | GGTGA | 6 cut(s) | 396, 479, 701, 845, 1034, 1406 |
| AvaI | CYCGRG | 1 cut(s) | 987 |
| AvaII | GGWCC | 3 cut(s) | 750, 935, 1117 |
| BaeGI | GKGCMC | 1 cut(s) | 181 |
| BamHI | GGATCC | 1 cut(s) | 553 |
| BanI | GGYRCC | 2 cut(s) | 178, 1351 |
| BanII | GRGCYC | 1 cut(s) | 376 |
| BauI | CACGAG | 1 cut(s) | 306 |
| BbsI | GAAGAC | 1 cut(s) | 1340 |
| Bbv12I | GWGCWC | 2 cut(s) | 307, 1284 |
| BbvI | GCAGC | 3 cut(s) | 295, 352, 448 |
| BccI | CCATC | 4 cut(s) | 577, 750, 1084, 1573 |
| BceAI | ACGGC | 2 cut(s) | 785, 1540 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 148, 182, 933, 967 |
| BciT130I | CCWGG | 5 cut(s) | 15, 321, 370, 426, 629 |
| BcoDI | GTCTC | 6 cut(s) | 61, 238, 760, 803, 913, 1010 |
| BfaI | CTAG | 2 cut(s) | 351, 548 |
| BfmI | CTRYAG | 1 cut(s) | 1545 |
| BfoI | RGCGCY | 1 cut(s) | 1355 |
| BfuAI | ACCTGC | 2 cut(s) | 301, 808 |
| BisI | GCNGC | 3 cut(s) | 284, 366, 462 |
| BlsI | GCNGC | 3 cut(s) | 285, 367, 463 |
| Bme1390I | CCNGG | 5 cut(s) | 15, 321, 370, 426, 629 |
| Bme18I | GGWCC | 3 cut(s) | 750, 935, 1117 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1528 |
| BmeT110I | CYCGRG | 1 cut(s) | 987 |
| BmgBI | CACGTC | 1 cut(s) | 1597 |
| BmgT120I | GGNCC | 4 cut(s) | 750, 771, 935, 1117 |
| BmiI | GGNNCC | 7 cut(s) | 180, 375, 525, 555, 1118, 1119, 1353 |
| BmrFI | CCNGG | 5 cut(s) | 15, 321, 370, 426, 629 |
| BmrI | ACTGGG | 1 cut(s) | 822 |
| BmsI | GCATC | 3 cut(s) | 14, 116, 305 |
| BmuI | ACTGGG | 1 cut(s) | 822 |
| BpiI | GAAGAC | 1 cut(s) | 1340 |
| BpmI | CTGGAG | 2 cut(s) | 745, 1483 |
| Bpu10I | CCTNAGC | 3 cut(s) | 378, 1123, 1485 |
| BpuEI | CTTGAG | 3 cut(s) | 1323, 1331, 1367 |
| BsaAI | YACGTR | 1 cut(s) | 1112 |
| BsaHI | GRCGYC | 2 cut(s) | 646, 1352 |
| BsaI | GGTCTC | 1 cut(s) | 238 |
| BsaJI | CCNNGG | 3 cut(s) | 320, 369, 1425 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1161, 1191 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 299, 413 |
| Bse118I | RCCGGY | 1 cut(s) | 464 |
| Bse1I | ACTGG | 7 cut(s) | 128, 391, 728, 817, 927, 1024, 1466 |
| Bse3DI | GCAATG | 3 cut(s) | 807, 1134, 1377 |
| BseBI | CCWGG | 5 cut(s) | 15, 321, 370, 426, 629 |
| BseDI | CCNNGG | 3 cut(s) | 320, 369, 1425 |
| BseGI | GGATG | 2 cut(s) | 217, 652 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 299, 413 |
| BseMI | GCAATG | 3 cut(s) | 807, 1134, 1377 |
| BseMII | CTCAG | 3 cut(s) | 72, 369, 1476 |
| BseNI | ACTGG | 7 cut(s) | 128, 391, 728, 817, 927, 1024, 1466 |
| BseRI | GAGGAG | 2 cut(s) | 451, 1319 |
| BseSI | GKGCMC | 1 cut(s) | 181 |
| BseXI | GCAGC | 3 cut(s) | 295, 352, 448 |
| Bsh1236I | CGCG | 1 cut(s) | 1235 |
| BshFI | GGCC | 2 cut(s) | 337, 772 |
| BshNI | GGYRCC | 2 cut(s) | 178, 1351 |
| BsiHKAI | GWGCWC | 2 cut(s) | 307, 1284 |
| BsiHKCI | CYCGRG | 1 cut(s) | 987 |
| BsiSI | CCGG | 1 cut(s) | 465 |
| BslFI | GGGAC | 3 cut(s) | 992, 1108, 1130 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 299, 413 |
| BsmAI | GTCTC | 6 cut(s) | 61, 238, 760, 803, 913, 1010 |
| BsmBI | CGTCTC | 1 cut(s) | 760 |
| BsmFI | GGGAC | 3 cut(s) | 992, 1108, 1130 |
| BsmI | GAATGC | 1 cut(s) | 315 |
| BsnI | GGCC | 2 cut(s) | 337, 772 |
| Bso31I | GGTCTC | 1 cut(s) | 238 |
| BsoBI | CYCGRG | 1 cut(s) | 987 |
| Bsp1286I | GDGCHC | 4 cut(s) | 181, 307, 376, 1284 |
| Bsp143I | GATC | 6 cut(s) | 421, 553, 1069, 1144, 1171, 1204 |
| BspACI | CCGC | 3 cut(s) | 908, 1167, 1235 |
| BspANI | GGCC | 2 cut(s) | 337, 772 |
| BspCNI | CTCAG | 3 cut(s) | 71, 370, 1477 |
| BspFNI | CGCG | 1 cut(s) | 1235 |
| BspHI | TCATGA | 1 cut(s) | 1243 |
| BspLI | GGNNCC | 7 cut(s) | 180, 375, 525, 555, 1118, 1119, 1353 |
| BspMI | ACCTGC | 2 cut(s) | 301, 808 |
| BspPI | GGATC | 6 cut(s) | 416, 548, 561, 1152, 1166, 1199 |
| BspT107I | GGYRCC | 2 cut(s) | 178, 1351 |
| BspTNI | GGTCTC | 1 cut(s) | 238 |
| BsrDI | GCAATG | 3 cut(s) | 807, 1134, 1377 |
| BsrFI | RCCGGY | 1 cut(s) | 464 |
| BsrI | ACTGG | 7 cut(s) | 128, 391, 728, 817, 927, 1024, 1466 |
| BssAI | RCCGGY | 1 cut(s) | 464 |
| BssECI | CCNNGG | 3 cut(s) | 320, 369, 1425 |
| BssMI | GATC | 6 cut(s) | 421, 553, 1069, 1144, 1171, 1204 |
| BssNAI | GTATAC | 1 cut(s) | 1109 |
| BssNI | GRCGYC | 2 cut(s) | 646, 1352 |
| BssSI | CACGAG | 1 cut(s) | 306 |
| Bst1107I | GTATAC | 1 cut(s) | 1109 |
| Bst2BI | CACGAG | 1 cut(s) | 306 |
| Bst2UI | CCWGG | 5 cut(s) | 15, 321, 370, 426, 629 |
| Bst4CI | ACNGT | 5 cut(s) | 115, 408, 505, 787, 1189 |
| Bst6I | CTCTTC | 1 cut(s) | 1008 |
| BstACI | GRCGYC | 2 cut(s) | 646, 1352 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 302 |
| BstBAI | YACGTR | 1 cut(s) | 1112 |
| BstC8I | GCNNGC | 1 cut(s) | 313 |
| BstDEI | CTNAG | 4 cut(s) | 58, 378, 1123, 1485 |
| BstEII | GGTNACC | 1 cut(s) | 402 |
| BstF5I | GGATG | 2 cut(s) | 217, 652 |
| BstFNI | CGCG | 1 cut(s) | 1235 |
| BstH2I | RGCGCY | 1 cut(s) | 1355 |
| BstHHI | GCGC | 2 cut(s) | 1235, 1354 |
| BstKTI | GATC | 6 cut(s) | 424, 556, 1072, 1147, 1174, 1207 |
| BstMAI | GTCTC | 6 cut(s) | 61, 238, 760, 803, 913, 1010 |
| BstMBI | GATC | 6 cut(s) | 421, 553, 1069, 1144, 1171, 1204 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 302, 371, 823, 1351 |
| BstNI | CCWGG | 5 cut(s) | 15, 321, 370, 426, 629 |
| BstNSI | RCATGY | 1 cut(s) | 1531 |
| BstPI | GGTNACC | 1 cut(s) | 402 |
| BstSCI | CCNGG | 5 cut(s) | 13, 319, 368, 424, 627 |
| BstSFI | CTRYAG | 1 cut(s) | 1545 |
| BstSLI | GKGCMC | 1 cut(s) | 181 |
| BstSNI | TACGTA | 1 cut(s) | 1112 |
| BstUI | CGCG | 1 cut(s) | 1235 |
| BstV1I | GCAGC | 3 cut(s) | 295, 352, 448 |
| BstV2I | GAAGAC | 1 cut(s) | 1340 |
| BstX2I | RGATCY | 4 cut(s) | 421, 553, 1171, 1204 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 21, 77 |
| BstYI | RGATCY | 4 cut(s) | 421, 553, 1171, 1204 |
| BstZ17I | GTATAC | 1 cut(s) | 1109 |
| BsuRI | GGCC | 2 cut(s) | 337, 772 |
| BtrI | CACGTC | 1 cut(s) | 1597 |
| BtsCI | GGATG | 2 cut(s) | 217, 652 |
| BtsI | GCAGTG | 1 cut(s) | 516 |
| BtsIMutI | CAGTG | 2 cut(s) | 510, 516 |
| BveI | ACCTGC | 2 cut(s) | 301, 808 |
| Cac8I | GCNNGC | 1 cut(s) | 313 |
| CaiI | CAGNNNCTG | 3 cut(s) | 461, 599, 812 |
| CciI | TCATGA | 1 cut(s) | 1243 |
| CfoI | GCGC | 2 cut(s) | 1235, 1354 |
| Cfr10I | RCCGGY | 1 cut(s) | 464 |
| Cfr13I | GGNCC | 4 cut(s) | 750, 771, 935, 1117 |
| CseI | GACGC | 2 cut(s) | 233, 551 |
| CviAII | CATG | 4 cut(s) | 71, 87, 1244, 1528 |
| DdeI | CTNAG | 4 cut(s) | 58, 378, 1123, 1485 |
| DinI | GGCGCC | 1 cut(s) | 1353 |
| DpnI | GATC | 6 cut(s) | 423, 555, 1071, 1146, 1173, 1206 |
| DpnII | GATC | 6 cut(s) | 421, 553, 1069, 1144, 1171, 1204 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 391 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1528 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 391 |
| Eam1104I | CTCTTC | 1 cut(s) | 1008 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1528 |
| EarI | CTCTTC | 1 cut(s) | 1008 |
| EciI | GGCGGA | 1 cut(s) | 1182 |
| Eco105I | TACGTA | 1 cut(s) | 1112 |
| Eco24I | GRGCYC | 1 cut(s) | 376 |
| Eco31I | GGTCTC | 1 cut(s) | 238 |
| Eco47I | GGWCC | 3 cut(s) | 750, 935, 1117 |
| Eco57I | CTGAAG | 3 cut(s) | 360, 519, 1295 |
| Eco88I | CYCGRG | 1 cut(s) | 987 |
| Eco91I | GGTNACC | 1 cut(s) | 402 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1117 |
| EcoO65I | GGTNACC | 1 cut(s) | 402 |
| EcoRII | CCWGG | 5 cut(s) | 13, 319, 368, 424, 627 |
| EcoT38I | GRGCYC | 1 cut(s) | 376 |
| EgeI | GGCGCC | 1 cut(s) | 1353 |
| EheI | GGCGCC | 1 cut(s) | 1353 |
| Esp3I | CGTCTC | 1 cut(s) | 760 |
| FaeI | CATG | 4 cut(s) | 74, 90, 1247, 1531 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 885, 917, 967, 999 |
| FaqI | GGGAC | 3 cut(s) | 992, 1108, 1130 |
| FatI | CATG | 4 cut(s) | 70, 86, 1243, 1527 |
| FblI | GTMKAC | 2 cut(s) | 1108, 1548 |
| Fnu4HI | GCNGC | 3 cut(s) | 284, 366, 462 |
| FokI | GGATG | 2 cut(s) | 224, 639 |
| FriOI | GRGCYC | 1 cut(s) | 376 |
| Fsp4HI | GCNGC | 3 cut(s) | 284, 366, 462 |
| FspBI | CTAG | 2 cut(s) | 351, 548 |
| GlaI | GCGC | 2 cut(s) | 1234, 1353 |
| GluI | GCNGC | 3 cut(s) | 284, 366, 462 |
| GsuI | CTGGAG | 2 cut(s) | 745, 1483 |
| HaeII | RGCGCY | 1 cut(s) | 1355 |
| HaeIII | GGCC | 2 cut(s) | 337, 772 |
| HapII | CCGG | 1 cut(s) | 465 |
| HgaI | GACGC | 2 cut(s) | 233, 551 |
| HhaI | GCGC | 2 cut(s) | 1235, 1354 |
| Hin1I | GRCGYC | 2 cut(s) | 646, 1352 |
| Hin1II | CATG | 4 cut(s) | 74, 90, 1247, 1531 |
| Hin6I | GCGC | 2 cut(s) | 1233, 1352 |
| HinP1I | GCGC | 2 cut(s) | 1233, 1352 |
| HincII | GTYRAC | 1 cut(s) | 1387 |
| HindII | GTYRAC | 1 cut(s) | 1387 |
| HindIII | AAGCTT | 1 cut(s) | 824 |
| HinfI | GANTC | 8 cut(s) | 160, 218, 269, 470, 491, 776, 1336, 1553 |
| HpaII | CCGG | 1 cut(s) | 465 |
| HphI | GGTGA | 6 cut(s) | 396, 479, 701, 845, 1034, 1406 |
| Hpy166II | GTNNAC | 7 cut(s) | 248, 938, 1109, 1180, 1192, 1387, 1549 |
| Hpy8I | GTNNAC | 7 cut(s) | 248, 938, 1109, 1180, 1192, 1387, 1549 |
| Hpy99I | CGWCG | 1 cut(s) | 1526 |
| HpyAV | CCTTC | 4 cut(s) | 202, 335, 1270, 1400 |
| HpyCH4III | ACNGT | 5 cut(s) | 115, 408, 505, 787, 1189 |
| HpyCH4IV | ACGT | 3 cut(s) | 646, 1111, 1596 |
| HpyCH4V | TGCA | 2 cut(s) | 296, 944 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 302, 371, 823, 1351 |
| HpyF3I | CTNAG | 4 cut(s) | 58, 378, 1123, 1485 |
| HpySE526I | ACGT | 3 cut(s) | 646, 1111, 1596 |
| Hsp92I | GRCGYC | 2 cut(s) | 646, 1352 |
| Hsp92II | CATG | 4 cut(s) | 74, 90, 1247, 1531 |
| HspAI | GCGC | 2 cut(s) | 1233, 1352 |
| KasI | GGCGCC | 1 cut(s) | 1351 |
| KflI | GGGWCCC | 1 cut(s) | 1117 |
| Kzo9I | GATC | 6 cut(s) | 421, 553, 1069, 1144, 1171, 1204 |
| LmnI | GCTCC | 3 cut(s) | 379, 1279, 1306 |
| Lsp1109I | GCAGC | 3 cut(s) | 295, 352, 448 |
| LweI | GCATC | 3 cut(s) | 14, 116, 305 |
| MaeI | CTAG | 2 cut(s) | 351, 548 |
| MaeII | ACGT | 3 cut(s) | 646, 1111, 1596 |
| MaeIII | GTNAC | 1 cut(s) | 402 |
| MalI | GATC | 6 cut(s) | 423, 555, 1071, 1146, 1173, 1206 |
| MboI | GATC | 6 cut(s) | 421, 553, 1069, 1144, 1171, 1204 |
| MflI | RGATCY | 4 cut(s) | 421, 553, 1171, 1204 |
| MhlI | GDGCHC | 4 cut(s) | 181, 307, 376, 1284 |
| MluCI | AATT | 3 cut(s) | 745, 1044, 1317 |
| Mly113I | GGCGCC | 1 cut(s) | 1352 |
| MlyI | GAGTC | 4 cut(s) | 227, 263, 500, 1330 |
| MmeI | TCCRAC | 2 cut(s) | 112, 866 |
| MroXI | GAANNNNTTC | 2 cut(s) | 900, 996 |
| MseI | TTAA | 1 cut(s) | 1565 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1088 |
| MspI | CCGG | 1 cut(s) | 465 |
| MspR9I | CCNGG | 5 cut(s) | 15, 321, 370, 426, 629 |
| Mva1269I | GAATGC | 1 cut(s) | 315 |
| MvaI | CCWGG | 5 cut(s) | 15, 321, 370, 426, 629 |
| MvnI | CGCG | 1 cut(s) | 1235 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 302, 371, 823, 1351 |
| NarI | GGCGCC | 1 cut(s) | 1352 |
| NdeII | GATC | 6 cut(s) | 421, 553, 1069, 1144, 1171, 1204 |
| NlaIII | CATG | 4 cut(s) | 74, 90, 1247, 1531 |
| NlaIV | GGNNCC | 7 cut(s) | 180, 375, 525, 555, 1118, 1119, 1353 |
| NmuCI | GTSAC | 1 cut(s) | 402 |
| NspI | RCATGY | 1 cut(s) | 1531 |
| PaeR7I | CTCGAG | 1 cut(s) | 987 |
| PagI | TCATGA | 1 cut(s) | 1243 |
| PctI | GAATGC | 1 cut(s) | 315 |
| PdmI | GAANNNNTTC | 2 cut(s) | 900, 996 |
| PfeI | GAWTC | 4 cut(s) | 160, 470, 776, 1553 |
| PfoI | TCCNGGA | 1 cut(s) | 424 |
| PkrI | GCNGC | 3 cut(s) | 285, 367, 463 |
| PleI | GAGTC | 4 cut(s) | 226, 263, 499, 1330 |
| PluTI | GGCGCC | 1 cut(s) | 1355 |
| PpsI | GAGTC | 4 cut(s) | 226, 263, 499, 1330 |
| Ppu21I | YACGTR | 1 cut(s) | 1112 |
| PpuMI | RGGWCCY | 1 cut(s) | 1117 |
| Psp5II | RGGWCCY | 1 cut(s) | 1117 |
| Psp6I | CCWGG | 5 cut(s) | 13, 319, 368, 424, 627 |
| PspEI | GGTNACC | 1 cut(s) | 402 |
| PspGI | CCWGG | 5 cut(s) | 13, 319, 368, 424, 627 |
| PspN4I | GGNNCC | 7 cut(s) | 180, 375, 525, 555, 1118, 1119, 1353 |
| PspPI | GGNCC | 4 cut(s) | 750, 771, 935, 1117 |
| PspPPI | RGGWCCY | 1 cut(s) | 1117 |
| PstNI | CAGNNNCTG | 3 cut(s) | 461, 599, 812 |
| PsuI | RGATCY | 4 cut(s) | 421, 553, 1171, 1204 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1088 |
| SaqAI | TTAA | 1 cut(s) | 1565 |
| SatI | GCNGC | 3 cut(s) | 284, 366, 462 |
| Sau3AI | GATC | 6 cut(s) | 421, 553, 1069, 1144, 1171, 1204 |
| Sau96I | GGNCC | 4 cut(s) | 750, 771, 935, 1117 |
| SchI | GAGTC | 4 cut(s) | 227, 263, 500, 1330 |
| ScrFI | CCNGG | 5 cut(s) | 15, 321, 370, 426, 629 |
| SduI | GDGCHC | 4 cut(s) | 181, 307, 376, 1284 |
| SfaNI | GCATC | 3 cut(s) | 14, 116, 305 |
| SfcI | CTRYAG | 1 cut(s) | 1545 |
| SfoI | GGCGCC | 1 cut(s) | 1353 |
| Sfr274I | CTCGAG | 1 cut(s) | 987 |
| SinI | GGWCC | 3 cut(s) | 750, 935, 1117 |
| SlaI | CTCGAG | 1 cut(s) | 987 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1088 |
| SmlI | CTYRAG | 4 cut(s) | 987, 1310, 1338, 1346 |
| SmoI | CTYRAG | 4 cut(s) | 987, 1310, 1338, 1346 |
| SnaBI | TACGTA | 1 cut(s) | 1112 |
| Sse9I | AATT | 3 cut(s) | 745, 1044, 1317 |
| SsiI | CCGC | 3 cut(s) | 908, 1167, 1235 |
| SspDI | GGCGCC | 1 cut(s) | 1351 |
| SspMI | CTAG | 2 cut(s) | 351, 548 |
| StyD4I | CCNGG | 5 cut(s) | 13, 319, 368, 424, 627 |
| TaaI | ACNGT | 5 cut(s) | 115, 408, 505, 787, 1189 |
| TaiI | ACGT | 3 cut(s) | 649, 1114, 1599 |
| TaqI | TCGA | 4 cut(s) | 158, 355, 988, 1072 |
| TasI | AATT | 3 cut(s) | 745, 1044, 1317 |
| TfiI | GAWTC | 4 cut(s) | 160, 470, 776, 1553 |
| Tru1I | TTAA | 1 cut(s) | 1565 |
| Tru9I | TTAA | 1 cut(s) | 1565 |
| TscAI | CASTG | 2 cut(s) | 510, 516 |
| TseFI | GTSAC | 1 cut(s) | 402 |
| TseI | GCWGC | 3 cut(s) | 283, 365, 461 |
| Tsp45I | GTSAC | 1 cut(s) | 402 |
| TspDTI | ATGAA | 9 cut(s) | 111, 723, 1026, 1044, 1227, 1232, 1260, 1419, 1449 |
| TspRI | CASTG | 2 cut(s) | 510, 516 |
| VpaK11BI | GGWCC | 3 cut(s) | 750, 935, 1117 |
| XapI | RAATTY | 1 cut(s) | 1317 |
| XceI | RCATGY | 1 cut(s) | 1531 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 149 |
| XhoI | CTCGAG | 1 cut(s) | 987 |
| XmiI | GTMKAC | 2 cut(s) | 1108, 1548 |
| XmnI | GAANNNNTTC | 2 cut(s) | 900, 996 |
| XspI | CTAG | 2 cut(s) | 351, 548 |
| ZraI | GACGTC | 1 cut(s) | 647 |