Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0010065

Physical Location & Seq

Genomic Coordinates Reverse (-)

10347211 .. 10352310

Gene Structure 5100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG114100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGGCATCAATATCAACAACTTGGCTCTATCAAGATAGAGGATTGAAAGGTACGGTCTTTTCACAGAGCCATGCTGCTGGGAACCCATGTTTCAATTACAAGACATCGTTTGTTAGATCATTTCCAGTTAGAGTTGGCTTAATTATATCGCCGAGGAGGGGGCCTTTACTTCCTTGTATAAAGTGTGAGAAGAATGATGAATCTTCCAAAGATGTGTCTGCTGATGAATCTTCCAAAGATGTGTCTATTGATGAATCTCCAAAAGAGGTTACGAAAGAGGTGACTGTCGAGCGTGCACCCTACTATAGTTATTTGGACTCTACATCTGGGCAACTTGAACCAGCATCTGGTGCTCGTGCCAGCATTCCTGGACAGGATTATTGGCCTGAAGGGACCGCTAGTCGAGTTAGGGCTGCCAATGCACCCGAGCCAACTGGTGAGTCTGTTGGCTCTCCATCTTTTGGTAGAAGTCCTGGAAGTAGGAGGAGGAAGAAGAAAGCATCAGTTGAGGCTCATGACTCTTCTGACCCTAGTGTAAAATCAAGTGAACTAGTGGCAGTGGCAATGGAACCAGAGATTTTGGAGGACACAATGGAAGACGTTAAAGATATCTCATCTGACTATGTGGTCTATCAGATGGGACCTGAAAAAGAAGAAGAAACAGGATATGAACTAGACAAGAAACTTGGACGCCCTCATCCATTTATTGATCCAGAAACTAAGAAGCCATTAGAAGAGCCGCTTACAAGTGATGAACTATGGTGGAACTGGAGAAAGCCAGACAAGGAACAATGGTCCAGATGGCAAAGGAGGCGACCTGACAGTGAAACGGTTTTTCTCAAAGCAATGGCAGAGACTGGGCAAGTAAAGCTTTATGGAGAAGAGCCAACATTGACTGAAACTTCACTTTACAGAGCAAGGCGACATCTTTTTAAGGAAGAAAGGCTTCAAGCTGAACAAGAGAAACTGGATAAGATAGGTCCGCTTGCATATTATTCAGAATGGGTAAAAGATTGGAAGAGAGACACTTCTCGAGAAGCAGTTCAAAAGCATTTTGAAGAGACTGGTGAAAATGAAACAACCCAACTAATTGACATGTTTAGTCATCAAACAGATCGGGAGTATCGCATAATGATGGGGACTGATATCCGAATAAAGAGGGATCCTTTAGCAATGAGAATGCGGGAGGATCAAATAAAGCAAATATGGGGTGGAGATCCAGTGTACCCAACTGTTAACTATATTCAAGATCCAGATGAAGTGATTGATTACAGAGGCCCTGATTTTCATGAACCAACACCAAATATGCTGTCTTTTCTGAAGGAGGTCAGCACTATCAAATTCCCCTTCCTTTTCCTTTCTGGGTTATTAAGAAGAGTTTATTTGTCTATTTTATGTCATGCAGCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0003727 GO:0005488 GO:0008150 GO:0010468 GO:0019222 GO:0050789 GO:0060255 GO:0065007 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

470

Amino Acids

53.82

Weight (kDa)

5.37

Isoelectric Point (pI)

46.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34640
fragaria_vesca	FvH4_3g05000 FvH4_3g05000
malus_domestica	MD05G1278900.v1.1 MD10G1257800.v1.1
prunus_persica	Prupe.4G086000_v2.0.a1 Prupe.4G086000_v2.0.a1 Prupe.4G086000_v2.0.a1 Prupe.4G086000_v2.0.a1
pyrus_communis	pycom05g25940 pycom10g21400
rosa_chinensis	RchiOBHm_Chr5g0014971
rosa_laevigata	RLG00000032156
rosa_multiflora	Rmu_sc0004889.1_g000013
rosa_roxburghii	Rroxscaffold_1G00061610
rosa_rugosa	Rorug05G0022200
rosa_samantha	Rh5AG117600 Rh5BG114800 Rh5CG126100 Rh5DG114100
rosa_wichuraiana	Rw5G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	626
AccB7I	CCANNNNNTGG	2 cut(s)	347, 461
AciI	CCGC	4 cut(s)	396, 740, 983, 1183
AclWI	GGATC	6 cut(s)	704, 1157, 1170, 1197, 1211, 1244
AcsI	RAATTY	1 cut(s)	1340
AcuI	CTGAAG	2 cut(s)	408, 1340
AcyI	GRCGYC	1 cut(s)	691
AfaI	GTAC	2 cut(s)	52, 1226
AfiI	CCNNNNNNNGG	3 cut(s)	158, 347, 461
AflIII	ACRYGT	1 cut(s)	1095
AgsI	TTSAA	7 cut(s)	46, 94, 338, 950, 1046, 1058, 1247
AhdI	GACNNNNNGTC	1 cut(s)	399
AhlI	ACTAGT	1 cut(s)	550
AjnI	CCWGG	2 cut(s)	367, 472
AluBI	AGCT	3 cut(s)	871, 953, 1406
AluI	AGCT	3 cut(s)	871, 953, 1406
Alw21I	GWGCWC	2 cut(s)	298, 355
Alw26I	GTCTC	3 cut(s)	848, 1017, 1055
Alw44I	GTGCAC	1 cut(s)	294
AlwI	GGATC	6 cut(s)	704, 1157, 1170, 1197, 1211, 1244
AlwNI	CAGNNNCTG	2 cut(s)	347, 857
Ama87I	CYCGRG	2 cut(s)	425, 1032
AoxI	GGCC	3 cut(s)	161, 383, 1276
ApaLI	GTGCAC	1 cut(s)	294
ApeKI	GCWGC	3 cut(s)	74, 413, 1403
ApoI	RAATTY	1 cut(s)	1340
ArsI	GACNNNNNNTTYG	2 cut(s)	1295, 1327
Asp700I	GAANNNNTTC	2 cut(s)	945, 1041
AspS9I	GGNCC	6 cut(s)	161, 393, 641, 795, 980, 1277
AsuHPI	GGTGA	3 cut(s)	292, 449, 1079
AvaI	CYCGRG	2 cut(s)	425, 1032
AvaII	GGWCC	4 cut(s)	393, 641, 795, 980
BaeGI	GKGCMC	1 cut(s)	298
BamHI	GGATCC	1 cut(s)	1162
BauI	CACGAG	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	603
Bbv12I	GWGCWC	2 cut(s)	298, 355
BbvI	GCAGC	2 cut(s)	61, 400
BccI	CCATC	4 cut(s)	463, 631, 795, 1129
BciT130I	CCWGG	2 cut(s)	369, 474
BcoDI	GTCTC	3 cut(s)	848, 1017, 1055
BcuI	ACTAGT	1 cut(s)	550
BfaI	CTAG	4 cut(s)	399, 531, 551, 674
BfmI	CTRYAG	1 cut(s)	304
BisI	GCNGC	4 cut(s)	75, 414, 740, 1404
BlsI	GCNGC	4 cut(s)	76, 415, 741, 1405
Bme1390I	CCNGG	2 cut(s)	369, 474
Bme18I	GGWCC	4 cut(s)	393, 641, 795, 980
BmeRI	GACNNNNNGTC	1 cut(s)	399
BmeT110I	CYCGRG	2 cut(s)	425, 1032
BmgT120I	GGNCC	6 cut(s)	161, 393, 641, 795, 980, 1277
BmiI	GGNNCC	6 cut(s)	83, 162, 394, 570, 642, 1164
BmrFI	CCNGG	2 cut(s)	369, 474
BmrI	ACTGGG	1 cut(s)	867
BmsI	GCATC	3 cut(s)	14, 353, 509
BmuI	ACTGGG	1 cut(s)	867
BpiI	GAAGAC	1 cut(s)	603
BpmI	CTGGAG	1 cut(s)	790
BsaHI	GRCGYC	1 cut(s)	691
BsaJI	CCNNGG	1 cut(s)	152
BsaXI	ACNNNNNCTCC	2 cut(s)	1206, 1236
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 347, 461
Bse1I	ACTGG	7 cut(s)	125, 439, 773, 862, 972, 1069, 1220
Bse3DI	GCAATG	3 cut(s)	570, 852, 1179
BseBI	CCWGG	2 cut(s)	369, 474
BseDI	CCNNGG	1 cut(s)	152
BseGI	GGATG	1 cut(s)	697
BseLI	CCNNNNNNNGG	3 cut(s)	158, 347, 461
BseMI	GCAATG	3 cut(s)	570, 852, 1179
BseNI	ACTGG	7 cut(s)	125, 439, 773, 862, 972, 1069, 1220
BseRI	GAGGAG	2 cut(s)	169, 499
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	2 cut(s)	61, 400
BseYI	CCCAGC	1 cut(s)	77
BshFI	GGCC	3 cut(s)	163, 385, 1278
BsiHKAI	GWGCWC	2 cut(s)	298, 355
BsiHKCI	CYCGRG	2 cut(s)	425, 1032
BslFI	GGGAC	3 cut(s)	406, 654, 1153
BslI	CCNNNNNNNGG	3 cut(s)	158, 347, 461
BsmAI	GTCTC	3 cut(s)	848, 1017, 1055
BsmFI	GGGAC	3 cut(s)	406, 654, 1153
BsmI	GAATGC	2 cut(s)	363, 1185
BsnI	GGCC	3 cut(s)	163, 385, 1278
BsoBI	CYCGRG	2 cut(s)	425, 1032
Bsp1286I	GDGCHC	2 cut(s)	298, 355
Bsp143I	GATC	7 cut(s)	116, 709, 1114, 1162, 1189, 1216, 1249
BspACI	CCGC	4 cut(s)	396, 740, 983, 1183
BspANI	GGCC	3 cut(s)	163, 385, 1278
BspHI	TCATGA	2 cut(s)	514, 1288
BspLI	GGNNCC	6 cut(s)	83, 162, 394, 570, 642, 1164
BspPI	GGATC	6 cut(s)	704, 1157, 1170, 1197, 1211, 1244
BspQI	GCTCTTC	2 cut(s)	729, 876
BsrDI	GCAATG	3 cut(s)	570, 852, 1179
BsrI	ACTGG	7 cut(s)	125, 439, 773, 862, 972, 1069, 1220
BssECI	CCNNGG	1 cut(s)	152
BssMI	GATC	7 cut(s)	116, 709, 1114, 1162, 1189, 1216, 1249
BssNI	GRCGYC	1 cut(s)	691
BssSI	CACGAG	1 cut(s)	354
Bst2BI	CACGAG	1 cut(s)	354
Bst2UI	CCWGG	2 cut(s)	369, 474
Bst4CI	ACNGT	5 cut(s)	55, 286, 824, 832, 1234
Bst6I	CTCTTC	6 cut(s)	526, 729, 876, 1013, 1053, 1369
BstACI	GRCGYC	1 cut(s)	691
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstC8I	GCNNGC	3 cut(s)	294, 361, 987
BstDEI	CTNAG	1 cut(s)	720
BstF5I	GGATG	1 cut(s)	697
BstKTI	GATC	7 cut(s)	119, 712, 1117, 1165, 1192, 1219, 1252
BstMAI	GTCTC	3 cut(s)	848, 1017, 1055
BstMBI	GATC	7 cut(s)	116, 709, 1114, 1162, 1189, 1216, 1249
BstMWI	GCNNNNNNNGC	4 cut(s)	350, 419, 811, 868
BstNI	CCWGG	2 cut(s)	369, 474
BstNSI	RCATGY	1 cut(s)	1099
BstSCI	CCNGG	2 cut(s)	367, 472
BstSFI	CTRYAG	1 cut(s)	304
BstSLI	GKGCMC	1 cut(s)	298
BstV1I	GCAGC	2 cut(s)	61, 400
BstV2I	GAAGAC	1 cut(s)	603
BstX2I	RGATCY	3 cut(s)	1162, 1216, 1249
BstXI	CCANNNNNNTGG	1 cut(s)	77
BstYI	RGATCY	3 cut(s)	1162, 1216, 1249
BsuRI	GGCC	3 cut(s)	163, 385, 1278
BtsCI	GGATG	1 cut(s)	697
BtsI	GCAGTG	1 cut(s)	564
BtsIMutI	CAGTG	3 cut(s)	564, 829, 1227
Cac8I	GCNNGC	3 cut(s)	294, 361, 987
CaiI	CAGNNNCTG	2 cut(s)	347, 857
CciI	TCATGA	2 cut(s)	514, 1288
Cfr13I	GGNCC	6 cut(s)	161, 393, 641, 795, 980, 1277
CseI	GACGC	1 cut(s)	699
Csp6I	GTAC	2 cut(s)	51, 1225
CviAII	CATG	6 cut(s)	71, 87, 515, 1096, 1289, 1400
CviQI	GTAC	2 cut(s)	51, 1225
DdeI	CTNAG	1 cut(s)	720
DpnI	GATC	7 cut(s)	118, 711, 1116, 1164, 1191, 1218, 1251
DpnII	GATC	7 cut(s)	116, 709, 1114, 1162, 1189, 1216, 1249
DrdI	GACNNNNNNGTC	1 cut(s)	626
DriI	GACNNNNNGTC	1 cut(s)	399
DseDI	GACNNNNNNGTC	1 cut(s)	626
Eam1104I	CTCTTC	6 cut(s)	526, 729, 876, 1013, 1053, 1369
Eam1105I	GACNNNNNGTC	1 cut(s)	399
EarI	CTCTTC	6 cut(s)	526, 729, 876, 1013, 1053, 1369
Eco32I	GATATC	2 cut(s)	610, 1147
Eco47I	GGWCC	4 cut(s)	393, 641, 795, 980
Eco57I	CTGAAG	2 cut(s)	408, 1340
Eco88I	CYCGRG	2 cut(s)	425, 1032
EcoO109I	RGGNCCY	3 cut(s)	161, 641, 1277
EcoRII	CCWGG	2 cut(s)	367, 472
EcoRV	GATATC	2 cut(s)	610, 1147
FaeI	CATG	6 cut(s)	74, 90, 518, 1099, 1292, 1403
FalI	AAGNNNNNCTT	6 cut(s)	726, 758, 855, 887, 930, 962
FaqI	GGGAC	3 cut(s)	406, 654, 1153
FatI	CATG	6 cut(s)	70, 86, 514, 1095, 1288, 1399
FauI	CCCGC	1 cut(s)	1176
Fnu4HI	GCNGC	4 cut(s)	75, 414, 740, 1404
FokI	GGATG	1 cut(s)	684
Fsp4HI	GCNGC	4 cut(s)	75, 414, 740, 1404
FspBI	CTAG	4 cut(s)	399, 531, 551, 674
GluI	GCNGC	4 cut(s)	75, 414, 740, 1404
GsaI	CCCAGC	1 cut(s)	81
GsuI	CTGGAG	1 cut(s)	790
HaeIII	GGCC	3 cut(s)	163, 385, 1278
HgaI	GACGC	1 cut(s)	699
Hin1I	GRCGYC	1 cut(s)	691
Hin1II	CATG	6 cut(s)	74, 90, 518, 1099, 1292, 1403
HincII	GTYRAC	1 cut(s)	1237
HindII	GTYRAC	1 cut(s)	1237
HindIII	AAGCTT	1 cut(s)	869
HinfI	GANTC	6 cut(s)	200, 227, 254, 317, 440, 518
HpaI	GTTAAC	1 cut(s)	1237
HphI	GGTGA	3 cut(s)	292, 449, 1079
Hpy166II	GTNNAC	4 cut(s)	296, 548, 1225, 1237
Hpy188I	TCNGA	6 cut(s)	526, 619, 636, 1000, 1151, 1320
Hpy8I	GTNNAC	4 cut(s)	296, 548, 1225, 1237
HpyAV	CCTTC	3 cut(s)	383, 1315, 1357
HpyCH4III	ACNGT	5 cut(s)	55, 286, 824, 832, 1234
HpyCH4IV	ACGT	1 cut(s)	600
HpyCH4V	TGCA	4 cut(s)	296, 422, 989, 1403
HpyF10VI	GCNNNNNNNGC	4 cut(s)	350, 419, 811, 868
HpyF3I	CTNAG	1 cut(s)	720
HpySE526I	ACGT	1 cut(s)	600
Hsp92I	GRCGYC	1 cut(s)	691
Hsp92II	CATG	6 cut(s)	74, 90, 518, 1099, 1292, 1403
KspAI	GTTAAC	1 cut(s)	1237
Kzo9I	GATC	7 cut(s)	116, 709, 1114, 1162, 1189, 1216, 1249
LguI	GCTCTTC	2 cut(s)	729, 876
Lsp1109I	GCAGC	2 cut(s)	61, 400
LweI	GCATC	3 cut(s)	14, 353, 509
MaeI	CTAG	4 cut(s)	399, 531, 551, 674
MaeII	ACGT	1 cut(s)	600
MaeIII	GTNAC	2 cut(s)	268, 280
MalI	GATC	7 cut(s)	118, 711, 1116, 1164, 1191, 1218, 1251
MboI	GATC	7 cut(s)	116, 709, 1114, 1162, 1189, 1216, 1249
MflI	RGATCY	3 cut(s)	1162, 1216, 1249
MhlI	GDGCHC	2 cut(s)	298, 355
MluCI	AATT	4 cut(s)	94, 141, 1089, 1340
MlyI	GAGTC	3 cut(s)	311, 449, 512
MroXI	GAANNNNTTC	2 cut(s)	945, 1041
MseI	TTAA	5 cut(s)	140, 603, 933, 1236, 1370
MslI	CAYNNNNRTG	1 cut(s)	1133
MspR9I	CCNGG	2 cut(s)	369, 474
Mva1269I	GAATGC	2 cut(s)	363, 1185
MvaI	CCWGG	2 cut(s)	369, 474
MwoI	GCNNNNNNNGC	4 cut(s)	350, 419, 811, 868
NdeII	GATC	7 cut(s)	116, 709, 1114, 1162, 1189, 1216, 1249
NlaIII	CATG	6 cut(s)	74, 90, 518, 1099, 1292, 1403
NlaIV	GGNNCC	6 cut(s)	83, 162, 394, 570, 642, 1164
NmeAIII	GCCGAG	1 cut(s)	177
NmuCI	GTSAC	1 cut(s)	280
NspI	RCATGY	1 cut(s)	1099
PaeR7I	CTCGAG	1 cut(s)	1032
PagI	TCATGA	2 cut(s)	514, 1288
PciI	ACATGT	1 cut(s)	1095
PciSI	GCTCTTC	2 cut(s)	729, 876
PctI	GAATGC	2 cut(s)	363, 1185
PdmI	GAANNNNTTC	2 cut(s)	945, 1041
PfeI	GAWTC	3 cut(s)	200, 227, 254
PflMI	CCANNNNNTGG	2 cut(s)	347, 461
PfoI	TCCNGGA	2 cut(s)	367, 472
PkrI	GCNGC	4 cut(s)	76, 415, 741, 1405
PleI	GAGTC	3 cut(s)	311, 448, 512
PpsI	GAGTC	3 cut(s)	311, 448, 512
PpuMI	RGGWCCY	1 cut(s)	641
PscI	ACATGT	1 cut(s)	1095
Psp5II	RGGWCCY	1 cut(s)	641
Psp6I	CCWGG	2 cut(s)	367, 472
PspFI	CCCAGC	1 cut(s)	77
PspGI	CCWGG	2 cut(s)	367, 472
PspN4I	GGNNCC	6 cut(s)	83, 162, 394, 570, 642, 1164
PspPI	GGNCC	6 cut(s)	161, 393, 641, 795, 980, 1277
PspPPI	RGGWCCY	1 cut(s)	641
PstNI	CAGNNNCTG	2 cut(s)	347, 857
PsuI	RGATCY	3 cut(s)	1162, 1216, 1249
RsaI	GTAC	2 cut(s)	52, 1226
RsaNI	GTAC	2 cut(s)	51, 1225
RseI	CAYNNNNRTG	1 cut(s)	1133
SapI	GCTCTTC	2 cut(s)	729, 876
SaqAI	TTAA	5 cut(s)	140, 603, 933, 1236, 1370
SatI	GCNGC	4 cut(s)	75, 414, 740, 1404
Sau3AI	GATC	7 cut(s)	116, 709, 1114, 1162, 1189, 1216, 1249
Sau96I	GGNCC	6 cut(s)	161, 393, 641, 795, 980, 1277
SchI	GAGTC	3 cut(s)	311, 449, 512
ScrFI	CCNGG	2 cut(s)	369, 474
SduI	GDGCHC	2 cut(s)	298, 355
SfaNI	GCATC	3 cut(s)	14, 353, 509
SfcI	CTRYAG	1 cut(s)	304
Sfr274I	CTCGAG	1 cut(s)	1032
SinI	GGWCC	4 cut(s)	393, 641, 795, 980
SlaI	CTCGAG	1 cut(s)	1032
SmiMI	CAYNNNNRTG	1 cut(s)	1133
SmlI	CTYRAG	1 cut(s)	1032
SmoI	CTYRAG	1 cut(s)	1032
SpeI	ACTAGT	1 cut(s)	550
Sse9I	AATT	4 cut(s)	94, 141, 1089, 1340
SsiI	CCGC	4 cut(s)	396, 740, 983, 1183
SspMI	CTAG	4 cut(s)	399, 531, 551, 674
StyD4I	CCNGG	2 cut(s)	367, 472
TaaI	ACNGT	5 cut(s)	55, 286, 824, 832, 1234
TaiI	ACGT	1 cut(s)	603
TaqI	TCGA	3 cut(s)	288, 403, 1033
TasI	AATT	4 cut(s)	94, 141, 1089, 1340
TauI	GCSGC	1 cut(s)	742
TfiI	GAWTC	3 cut(s)	200, 227, 254
Tru1I	TTAA	5 cut(s)	140, 603, 933, 1236, 1370
Tru9I	TTAA	5 cut(s)	140, 603, 933, 1236, 1370
TscAI	CASTG	3 cut(s)	564, 829, 1227
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	3 cut(s)	74, 413, 1403
Tsp45I	GTSAC	1 cut(s)	280
TspRI	CASTG	3 cut(s)	564, 829, 1227
Van91I	CCANNNNNTGG	2 cut(s)	347, 461
VneI	GTGCAC	1 cut(s)	294
VpaK11BI	GGWCC	4 cut(s)	393, 641, 795, 980
XapI	RAATTY	1 cut(s)	1340
XceI	RCATGY	1 cut(s)	1099
XhoI	CTCGAG	1 cut(s)	1032
XmnI	GAANNNNTTC	2 cut(s)	945, 1041
XspI	CTAG	4 cut(s)	399, 531, 551, 674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.