FvH4_3g05030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015570
Physical Location & Seq
Reverse (-)
2910528 .. 2912620
2093 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g05030.t1

Sequence Viewer

Length: 765 bp
ATGGCATGCTTTGTGCCTTTCAACAACAGGAACTTGGATATAAGTATCTTTGTGTTTAGGCCAACAGTAGTACACGTTGAGGAGCTTCTTGTTGGGCTAAAGCAATTCTCTCTGTGCACTGAGACTCTTGGTTGTGTACAGAGTTCTATCTTGCAGAGCATCCATGGAAATATGATCATATGGTTTGGAGCATGGCTGAAGAGATCTTCTGAAAATAAGGAATCACTGACTGCAAGCCTTCTCTCAATGCTCTCCAACCTAGCAACAAAGGCGATCTTAGTCGATCATACCTTCTTCGATGCCTACGCAGGAGAATCAAGAGAGGGATCTTGTGCGGCAAAATTCTGCACCGGAGACACAGTCTCAATGAGTGTAGCATCCTTCAATGGTGCCGGTGATGTTATAGCCGATGTCTCTTATGCATGCTTGGCTCTCTTCAAGTCTGGTTTCCACAAGATGGAAGGTGTGAGATCTGGGGTTTGTATGAAGTGCCAAACCAAGCCGAGCATTGCTTCTTTCTATGTATGGAAGTCTCTTCAATATTGCTACTCGTGGATTCTAAGCTCGGACCAAAGAAAAATACTGCTCCCTTATTTCGAAAGCTACTCTATTGATGTTAAGTATGACATTTTTCGAGTGGTTTATGTGAGTGGTGATAGTGAACCTGAGTTTCCGTTCTTCTATCCTCATCAAATATTGGAGAAAACAGCCGGAGGAGAAAGCAAAGATGAAGGTAAGGTTATGCACAGTGCTCCCATCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

255

Amino Acids

28.28

Weight (kDa)

6.07

Isoelectric Point (pI)

59.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7392 PF24118 98 - 211 3.4e-51 Domain of unknown function (DUF7392)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015570)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g05030
malus_domestica MD05G1279400.v1.1 MD10G1258100.v1.1
prunus_persica Prupe.4G085700_v2.0.a1
pyrus_communis pycom05g25970 pycom10g21440
rosa_chinensis RchiOBHm_Chr5g0014941
rosa_laevigata RLG00000032152
rosa_multiflora Rmu_ssc0000388.1_g000067
rosa_roxburghii Rroxscaffold_1G00061640
rosa_rugosa Rorug05G0021700
rosa_samantha Rh5AG117300 Rh5BG114300 Rh5CG125800 Rh5DG113700
rosa_wichuraiana Rw5G010100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 389
AccB7I CCANNNNNTGG 1 cut(s) 457
AciI CCGC 1 cut(s) 335
AclWI GGATC 1 cut(s) 334
AcsI RAATTY 1 cut(s) 341
AcuI CTGAAG 1 cut(s) 218
AfaI GTAC 2 cut(s) 72, 138
AfiI CCNNNNNNNGG 1 cut(s) 457
AflIII ACRYGT 1 cut(s) 73
AgsI TTSAA 4 cut(s) 22, 385, 439, 539
AluBI AGCT 3 cut(s) 85, 564, 603
AluI AGCT 3 cut(s) 85, 564, 603
Alw21I GWGCWC 2 cut(s) 119, 754
Alw26I GTCTC 5 cut(s) 116, 348, 367, 418, 537
Alw44I GTGCAC 1 cut(s) 115
AlwI GGATC 1 cut(s) 334
AoxI GGCC 1 cut(s) 59
ApaLI GTGCAC 1 cut(s) 115
ApoI RAATTY 1 cut(s) 341
AspS9I GGNCC 1 cut(s) 568
AsuHPI GGTGA 2 cut(s) 407, 665
AsuII TTCGAA 1 cut(s) 597
AvaII GGWCC 1 cut(s) 568
BaeGI GKGCMC 1 cut(s) 119
BanI GGYRCC 1 cut(s) 389
BauI CACGAG 1 cut(s) 550
Bbv12I GWGCWC 2 cut(s) 119, 754
BccI CCATC 2 cut(s) 451, 764
BclI TGATCA 1 cut(s) 174
BcoDI GTCTC 5 cut(s) 116, 348, 367, 418, 537
BfaI CTAG 1 cut(s) 260
BglII AGATCT 2 cut(s) 203, 470
BisI GCNGC 1 cut(s) 336
BlsI GCNGC 1 cut(s) 337
Bme18I GGWCC 1 cut(s) 568
BmgT120I GGNCC 1 cut(s) 568
BmiI GGNNCC 1 cut(s) 391
BmsI GCATC 3 cut(s) 168, 289, 386
Bpu14I TTCGAA 1 cut(s) 597
BsaJI CCNNGG 1 cut(s) 163
BsaWI WCCGGW 1 cut(s) 350
BsaXI ACNNNNNCTCC 2 cut(s) 345, 375
Bsc4I CCNNNNNNNGG 1 cut(s) 457
Bse118I RCCGGY 1 cut(s) 392
Bse3DI GCAATG 1 cut(s) 507
BseDI CCNNGG 1 cut(s) 163
BseGI GGATG 2 cut(s) 159, 377
BseLI CCNNNNNNNGG 1 cut(s) 457
BseMI GCAATG 1 cut(s) 507
BseMII CTCAG 2 cut(s) 111, 657
BseRI GAGGAG 2 cut(s) 95, 729
BseSI GKGCMC 1 cut(s) 119
BsgI GTGCAG 1 cut(s) 331
BshFI GGCC 1 cut(s) 61
BshNI GGYRCC 1 cut(s) 389
BsiHKAI GWGCWC 2 cut(s) 119, 754
BsiSI CCGG 3 cut(s) 351, 393, 711
BslI CCNNNNNNNGG 1 cut(s) 457
BsmAI GTCTC 5 cut(s) 116, 348, 367, 418, 537
BsnI GGCC 1 cut(s) 61
Bsp119I TTCGAA 1 cut(s) 597
Bsp1286I GDGCHC 2 cut(s) 119, 754
Bsp1407I TGTACA 1 cut(s) 136
Bsp143I GATC 6 cut(s) 174, 203, 273, 283, 326, 470
Bsp19I CCATGG 1 cut(s) 163
BspACI CCGC 1 cut(s) 335
BspANI GGCC 1 cut(s) 61
BspCNI CTCAG 2 cut(s) 112, 658
BspLI GGNNCC 1 cut(s) 391
BspPI GGATC 1 cut(s) 334
BspT104I TTCGAA 1 cut(s) 597
BspT107I GGYRCC 1 cut(s) 389
BsrDI GCAATG 1 cut(s) 507
BsrFI RCCGGY 1 cut(s) 392
BsrGI TGTACA 1 cut(s) 136
BssAI RCCGGY 1 cut(s) 392
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 6 cut(s) 174, 203, 273, 283, 326, 470
BssSI CACGAG 1 cut(s) 550
BssT1I CCWWGG 1 cut(s) 163
Bst2BI CACGAG 1 cut(s) 550
Bst4CI ACNGT 3 cut(s) 67, 361, 749
Bst6I CTCTTC 3 cut(s) 194, 440, 540
BstAUI TGTACA 1 cut(s) 136
BstBI TTCGAA 1 cut(s) 597
BstC8I GCNNGC 3 cut(s) 7, 235, 424
BstDEI CTNAG 4 cut(s) 120, 277, 560, 666
BstDSI CCRYGG 1 cut(s) 163
BstF5I GGATG 2 cut(s) 159, 377
BstKTI GATC 6 cut(s) 177, 206, 276, 286, 329, 473
BstMAI GTCTC 5 cut(s) 116, 348, 367, 418, 537
BstMBI GATC 6 cut(s) 174, 203, 273, 283, 326, 470
BstMWI GCNNNNNNNGC 2 cut(s) 269, 428
BstNSI RCATGY 2 cut(s) 9, 426
BstSLI GKGCMC 1 cut(s) 119
BstX2I RGATCY 3 cut(s) 203, 326, 470
BstYI RGATCY 3 cut(s) 203, 326, 470
BsuRI GGCC 1 cut(s) 61
BtgI CCRYGG 1 cut(s) 163
BtsCI GGATG 2 cut(s) 159, 377
BtsIMutI CAGTG 3 cut(s) 117, 224, 754
Cac8I GCNNGC 3 cut(s) 7, 235, 424
Cfr10I RCCGGY 1 cut(s) 392
Cfr13I GGNCC 1 cut(s) 568
Csp6I GTAC 2 cut(s) 71, 137
CviAII CATG 4 cut(s) 6, 164, 192, 423
CviQI GTAC 2 cut(s) 71, 137
DdeI CTNAG 4 cut(s) 120, 277, 560, 666
DpnI GATC 6 cut(s) 176, 205, 275, 285, 328, 472
DpnII GATC 6 cut(s) 174, 203, 273, 283, 326, 470
Eam1104I CTCTTC 3 cut(s) 194, 440, 540
EarI CTCTTC 3 cut(s) 194, 440, 540
Eco130I CCWWGG 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 568
Eco57I CTGAAG 1 cut(s) 218
EcoT14I CCWWGG 1 cut(s) 163
EcoT22I ATGCAT 1 cut(s) 424
ErhI CCWWGG 1 cut(s) 163
FaeI CATG 4 cut(s) 9, 167, 195, 426
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FatI CATG 4 cut(s) 5, 163, 191, 422
FauNDI CATATG 1 cut(s) 179
FbaI TGATCA 1 cut(s) 174
Fnu4HI GCNGC 1 cut(s) 336
FokI GGATG 2 cut(s) 146, 364
Fsp4HI GCNGC 1 cut(s) 336
FspBI CTAG 1 cut(s) 260
GluI GCNGC 1 cut(s) 336
HaeIII GGCC 1 cut(s) 61
HapII CCGG 3 cut(s) 351, 393, 711
Hin1II CATG 4 cut(s) 9, 167, 195, 426
HinfI GANTC 4 cut(s) 124, 221, 314, 556
HpaII CCGG 3 cut(s) 351, 393, 711
HphI GGTGA 2 cut(s) 407, 665
Hpy166II GTNNAC 4 cut(s) 73, 117, 137, 662
Hpy188I TCNGA 3 cut(s) 211, 568, 764
Hpy188III TCNNGA 1 cut(s) 318
Hpy8I GTNNAC 4 cut(s) 73, 117, 137, 662
HpyAV CCTTC 5 cut(s) 248, 301, 391, 455, 725
HpyCH4III ACNGT 3 cut(s) 67, 361, 749
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 6 cut(s) 117, 154, 233, 348, 422, 745
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 428
HpyF3I CTNAG 4 cut(s) 120, 277, 560, 666
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 4 cut(s) 9, 167, 195, 426
Ksp22I TGATCA 1 cut(s) 174
Kzo9I GATC 6 cut(s) 174, 203, 273, 283, 326, 470
LmnI GCTCC 4 cut(s) 82, 188, 591, 757
LpnPI CCDG 8 cut(s) 13, 294, 364, 406, 429, 459, 678, 724
LweI GCATC 3 cut(s) 168, 289, 386
MaeI CTAG 1 cut(s) 260
MaeII ACGT 1 cut(s) 75
MalI GATC 6 cut(s) 176, 205, 275, 285, 328, 472
MboI GATC 6 cut(s) 174, 203, 273, 283, 326, 470
MboII GAAGA 6 cut(s) 198, 211, 286, 427, 527, 670
MflI RGATCY 3 cut(s) 203, 326, 470
MhlI GDGCHC 2 cut(s) 119, 754
MluCI AATT 2 cut(s) 104, 341
MlyI GAGTC 1 cut(s) 118
MmeI TCCRAC 1 cut(s) 279
MnlI CCTC 4 cut(s) 73, 316, 696, 707
Mph1103I ATGCAT 1 cut(s) 424
MseI TTAA 1 cut(s) 618
MspI CCGG 3 cut(s) 351, 393, 711
MwoI GCNNNNNNNGC 2 cut(s) 269, 428
NcoI CCATGG 1 cut(s) 163
NdeI CATATG 1 cut(s) 179
NdeII GATC 6 cut(s) 174, 203, 273, 283, 326, 470
NlaIII CATG 4 cut(s) 9, 167, 195, 426
NlaIV GGNNCC 1 cut(s) 391
NmeAIII GCCGAG 1 cut(s) 528
NsiI ATGCAT 1 cut(s) 424
NspI RCATGY 2 cut(s) 9, 426
NspV TTCGAA 1 cut(s) 597
PaeI GCATGC 2 cut(s) 9, 426
PfeI GAWTC 3 cut(s) 221, 314, 556
PflFI GACNNNGTC 1 cut(s) 359
PflMI CCANNNNNTGG 1 cut(s) 457
PkrI GCNGC 1 cut(s) 337
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 391
PspPI GGNCC 1 cut(s) 568
PsuI RGATCY 3 cut(s) 203, 326, 470
PsyI GACNNNGTC 1 cut(s) 359
RsaI GTAC 2 cut(s) 72, 138
RsaNI GTAC 2 cut(s) 71, 137
SaqAI TTAA 1 cut(s) 618
SatI GCNGC 1 cut(s) 336
Sau3AI GATC 6 cut(s) 174, 203, 273, 283, 326, 470
Sau96I GGNCC 1 cut(s) 568
SchI GAGTC 1 cut(s) 118
SduI GDGCHC 2 cut(s) 119, 754
SfaNI GCATC 3 cut(s) 168, 289, 386
SfuI TTCGAA 1 cut(s) 597
SinI GGWCC 1 cut(s) 568
SphI GCATGC 2 cut(s) 9, 426
Sse9I AATT 2 cut(s) 104, 341
SsiI CCGC 1 cut(s) 335
SspI AATATT 2 cut(s) 542, 696
SspMI CTAG 1 cut(s) 260
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 3 cut(s) 67, 361, 749
TaiI ACGT 1 cut(s) 78
TaqI TCGA 4 cut(s) 282, 297, 597, 634
TasI AATT 2 cut(s) 104, 341
TatI WGTACW 2 cut(s) 70, 136
TauI GCSGC 1 cut(s) 338
TfiI GAWTC 3 cut(s) 221, 314, 556
Tru1I TTAA 1 cut(s) 618
Tru9I TTAA 1 cut(s) 618
TscAI CASTG 3 cut(s) 124, 231, 754
TspDTI ATGAA 2 cut(s) 500, 744
TspGWI ACGGA 1 cut(s) 663
TspRI CASTG 3 cut(s) 124, 231, 754
Tth111I GACNNNGTC 1 cut(s) 359
Van91I CCANNNNNTGG 1 cut(s) 457
VneI GTGCAC 1 cut(s) 115
VpaK11BI GGWCC 1 cut(s) 568
XapI RAATTY 1 cut(s) 341
XceI RCATGY 2 cut(s) 9, 426
XspI CTAG 1 cut(s) 260
Zsp2I ATGCAT 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.