Prupe.4G085700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0015570
Physical Location & Seq
Forward (+)
4204408 .. 4206231
1824 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G085700.1

Sequence Viewer

Length: 762 bp
ATGGCATGCTTCGTGCCTTTCAACAACAGGAATTTGGACATAAGTATCTTCGTGTTCAGACCAACTGTTGTGCTGGTTGATGACCTTCTTAATGCCCTCAAACAATTCTCTTTGTGCACCGAGTCTCTTGGCTGTGTACAAAGCTCCATCTTGCAGAGCATCCATGGAAATATGATCATATGGTTTGGAGCATGGCTGAAGAGATCTTGTGAAAACAAGGACTCATTGACTGCAAGCCTTCTCTCAATGTTAACGAACATGTCGAGCATGGCTATCTTACTCGAACACTCCTTCTTTGATGCATACGCCGGAGAATCAAGAGACGGGTCTTGTGCTGCAAAATTTTGCAGAGGTGACACGGTGTCAATGAGCACAGCGGTTGTCAATGGCGGCGACATGAACAACGTCTCTTACGCATGCTTAGCAATGTTCAAGTCCGGTTTCCAGAAGATGGAAGGCGTGGCTGCCGGTGTTTGCTTGAAATGCCAAACCAAGCCAAGAATTGCTTCTCTTTTTGTGTGGAAGTCTCTGCAATGTTGTTACTCATGGATTCTAAATTCAGACCAGAGAAAAGCAATGCTGCCCTATCTCGAAAGCGTGTCAATTGAGATTAAGTACGACATCTTTCGAGTGGTGTATGTCAGTGGTGACAACGATCTCAAGTTTCAGTTCTTCTATCCTCCTCATCAAATGTTGGAACAAACAACTGGAGGAGAAGGCAAAGAAGAAGGGCATCTCATGCGAAGCACTTCCATAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

254

Amino Acids

28.21

Weight (kDa)

6.42

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015570)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g05030
malus_domestica MD05G1279400.v1.1 MD10G1258100.v1.1
prunus_persica Prupe.4G085700_v2.0.a1
pyrus_communis pycom05g25970 pycom10g21440
rosa_chinensis RchiOBHm_Chr5g0014941
rosa_laevigata RLG00000032152
rosa_multiflora Rmu_ssc0000388.1_g000067
rosa_roxburghii Rroxscaffold_1G00061640
rosa_rugosa Rorug05G0021700
rosa_samantha Rh5AG117300 Rh5BG114300 Rh5CG125800 Rh5DG113700
rosa_wichuraiana Rw5G010100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 451
AciI CCGC 2 cut(s) 377, 390
AcsI RAATTY 3 cut(s) 31, 341, 556
AcuI CTGAAG 1 cut(s) 218
AfaI GTAC 2 cut(s) 138, 617
AfiI CCNNNNNNNGG 1 cut(s) 451
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 3 cut(s) 22, 433, 481
AhdI GACNNNNNGTC 1 cut(s) 361
AjuI GAANNNNNNNTTGG 2 cut(s) 490, 522
AluBI AGCT 1 cut(s) 144
AluI AGCT 1 cut(s) 144
Alw21I GWGCWC 2 cut(s) 119, 374
Alw26I GTCTC 4 cut(s) 129, 315, 412, 531
Alw44I GTGCAC 1 cut(s) 115
ApaLI GTGCAC 1 cut(s) 115
ApeKI GCWGC 3 cut(s) 335, 464, 580
ApoI RAATTY 3 cut(s) 31, 341, 556
Asp700I GAANNNNTTC 2 cut(s) 505, 748
AsuHPI GGTGA 2 cut(s) 365, 659
BaeGI GKGCMC 1 cut(s) 119
BaeI ACNNNNGTAYC 2 cut(s) 28, 61
Bbv12I GWGCWC 2 cut(s) 119, 374
BbvI GCAGC 3 cut(s) 322, 451, 567
BccI CCATC 2 cut(s) 155, 445
BclI TGATCA 1 cut(s) 174
BcoDI GTCTC 4 cut(s) 129, 315, 412, 531
BglII AGATCT 1 cut(s) 203
BisI GCNGC 4 cut(s) 336, 391, 465, 581
BlpI GCTNAGC 1 cut(s) 421
BlsI GCNGC 4 cut(s) 337, 392, 466, 582
BmeRI GACNNNNNGTC 1 cut(s) 361
BmsI GCATC 3 cut(s) 168, 289, 742
BpmI CTGGAG 1 cut(s) 729
Bpu1102I GCTNAGC 1 cut(s) 421
BpuEI CTTGAG 1 cut(s) 644
BsaJI CCNNGG 1 cut(s) 163
BsaWI WCCGGW 1 cut(s) 437
Bsc4I CCNNNNNNNGG 1 cut(s) 451
Bse118I RCCGGY 1 cut(s) 467
Bse1I ACTGG 1 cut(s) 712
Bse3DI GCAATG 3 cut(s) 432, 539, 582
BseDI CCNNGG 1 cut(s) 163
BseGI GGATG 1 cut(s) 159
BseLI CCNNNNNNNGG 1 cut(s) 451
BseMI GCAATG 3 cut(s) 432, 539, 582
BseNI ACTGG 1 cut(s) 712
BseRI GAGGAG 2 cut(s) 672, 726
BseSI GKGCMC 1 cut(s) 119
BseXI GCAGC 3 cut(s) 322, 451, 567
BsiHKAI GWGCWC 2 cut(s) 119, 374
BsiSI CCGG 3 cut(s) 309, 438, 468
BslI CCNNNNNNNGG 1 cut(s) 451
BsmAI GTCTC 4 cut(s) 129, 315, 412, 531
BsmBI CGTCTC 2 cut(s) 315, 412
Bsp1286I GDGCHC 2 cut(s) 119, 374
Bsp1407I TGTACA 1 cut(s) 136
Bsp143I GATC 3 cut(s) 174, 203, 655
Bsp1720I GCTNAGC 1 cut(s) 421
Bsp19I CCATGG 1 cut(s) 163
BspACI CCGC 2 cut(s) 377, 390
BsrDI GCAATG 3 cut(s) 432, 539, 582
BsrFI RCCGGY 1 cut(s) 467
BsrGI TGTACA 1 cut(s) 136
BsrI ACTGG 1 cut(s) 712
BssAI RCCGGY 1 cut(s) 467
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 3 cut(s) 174, 203, 655
BssT1I CCWWGG 1 cut(s) 163
Bst4CI ACNGT 2 cut(s) 67, 361
Bst6I CTCTTC 1 cut(s) 194
BstAPI GCANNNNNTGC 1 cut(s) 739
BstAUI TGTACA 1 cut(s) 136
BstC8I GCNNGC 3 cut(s) 7, 235, 418
BstDEI CTNAG 1 cut(s) 421
BstDSI CCRYGG 1 cut(s) 163
BstF5I GGATG 1 cut(s) 159
BstKTI GATC 3 cut(s) 177, 206, 658
BstMAI GTCTC 4 cut(s) 129, 315, 412, 531
BstMBI GATC 3 cut(s) 174, 203, 655
BstMWI GCNNNNNNNGC 3 cut(s) 422, 483, 739
BstNSI RCATGY 3 cut(s) 9, 262, 420
BstSLI GKGCMC 1 cut(s) 119
BstV1I GCAGC 3 cut(s) 322, 451, 567
BstX2I RGATCY 1 cut(s) 203
BstYI RGATCY 1 cut(s) 203
BtgI CCRYGG 1 cut(s) 163
BtsCI GGATG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 649
Cac8I GCNNGC 3 cut(s) 7, 235, 418
Cfr10I RCCGGY 1 cut(s) 467
Csp6I GTAC 2 cut(s) 137, 616
CviAII CATG 9 cut(s) 6, 164, 192, 259, 268, 397, 417, 546, 739
CviJI RGCY 7 cut(s) 132, 144, 196, 237, 272, 464, 496
CviKI_1 RGCY 7 cut(s) 132, 144, 196, 237, 272, 464, 496
CviQI GTAC 2 cut(s) 137, 616
DdeI CTNAG 1 cut(s) 421
DpnI GATC 3 cut(s) 176, 205, 657
DpnII GATC 3 cut(s) 174, 203, 655
DriI GACNNNNNGTC 1 cut(s) 361
Eam1104I CTCTTC 1 cut(s) 194
Eam1105I GACNNNNNGTC 1 cut(s) 361
EarI CTCTTC 1 cut(s) 194
Eco130I CCWWGG 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 218
EcoT14I CCWWGG 1 cut(s) 163
EcoT22I ATGCAT 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 163
Esp3I CGTCTC 2 cut(s) 315, 412
FaeI CATG 9 cut(s) 9, 167, 195, 262, 271, 400, 420, 549, 742
FalI AAGNNNNNCTT 2 cut(s) 490, 522
FatI CATG 9 cut(s) 5, 163, 191, 258, 267, 396, 416, 545, 738
FauNDI CATATG 1 cut(s) 179
FbaI TGATCA 1 cut(s) 174
Fnu4HI GCNGC 4 cut(s) 336, 391, 465, 581
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 4 cut(s) 336, 391, 465, 581
GluI GCNGC 4 cut(s) 336, 391, 465, 581
GsuI CTGGAG 1 cut(s) 729
HapII CCGG 3 cut(s) 309, 438, 468
Hin1II CATG 9 cut(s) 9, 167, 195, 262, 271, 400, 420, 549, 742
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HinfI GANTC 4 cut(s) 122, 221, 314, 550
HpaI GTTAAC 1 cut(s) 252
HpaII CCGG 3 cut(s) 309, 438, 468
HphI GGTGA 2 cut(s) 365, 659
Hpy166II GTNNAC 3 cut(s) 117, 137, 252
Hpy188I TCNGA 2 cut(s) 59, 562
Hpy188III TCNNGA 3 cut(s) 318, 445, 590
Hpy8I GTNNAC 3 cut(s) 117, 137, 252
HpyAV CCTTC 6 cut(s) 95, 248, 301, 449, 710, 722
HpyCH4III ACNGT 2 cut(s) 67, 361
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 7 cut(s) 117, 154, 233, 302, 338, 348, 532
HpyF10VI GCNNNNNNNGC 3 cut(s) 422, 483, 739
HpyF3I CTNAG 1 cut(s) 421
HpySE526I ACGT 1 cut(s) 405
Hsp92II CATG 9 cut(s) 9, 167, 195, 262, 271, 400, 420, 549, 742
Ksp22I TGATCA 1 cut(s) 174
KspAI GTTAAC 1 cut(s) 252
Kzo9I GATC 3 cut(s) 174, 203, 655
LmnI GCTCC 2 cut(s) 149, 188
LpnPI CCDG 8 cut(s) 13, 59, 322, 451, 458, 481, 578, 693
Lsp1109I GCAGC 3 cut(s) 322, 451, 567
LweI GCATC 3 cut(s) 168, 289, 742
MaeII ACGT 1 cut(s) 405
MaeIII GTNAC 3 cut(s) 353, 539, 647
MalI GATC 3 cut(s) 176, 205, 657
MboI GATC 3 cut(s) 174, 203, 655
MboII GAAGA 5 cut(s) 40, 211, 460, 664, 737
MfeI CAATTG 1 cut(s) 603
MflI RGATCY 1 cut(s) 203
MhlI GDGCHC 2 cut(s) 119, 374
MluCI AATT 6 cut(s) 31, 104, 341, 501, 556, 603
MlyI GAGTC 2 cut(s) 131, 215
MmeI TCCRAC 1 cut(s) 675
MnlI CCTC 5 cut(s) 107, 344, 690, 693, 704
Mph1103I ATGCAT 1 cut(s) 304
MroXI GAANNNNTTC 2 cut(s) 505, 748
MseI TTAA 3 cut(s) 90, 251, 612
MspA1I CMGCKG 1 cut(s) 377
MspI CCGG 3 cut(s) 309, 438, 468
MunI CAATTG 1 cut(s) 603
MwoI GCNNNNNNNGC 3 cut(s) 422, 483, 739
NcoI CCATGG 1 cut(s) 163
NdeI CATATG 1 cut(s) 179
NdeII GATC 3 cut(s) 174, 203, 655
NlaIII CATG 9 cut(s) 9, 167, 195, 262, 271, 400, 420, 549, 742
NmuCI GTSAC 2 cut(s) 353, 647
NsiI ATGCAT 1 cut(s) 304
NspI RCATGY 3 cut(s) 9, 262, 420
PaeI GCATGC 2 cut(s) 9, 420
PciI ACATGT 1 cut(s) 258
PcsI WCGNNNNNNNCGW 1 cut(s) 260
PdmI GAANNNNTTC 2 cut(s) 505, 748
PfeI GAWTC 2 cut(s) 314, 550
PflMI CCANNNNNTGG 1 cut(s) 451
PkrI GCNGC 4 cut(s) 337, 392, 466, 582
PleI GAGTC 2 cut(s) 130, 215
PpsI GAGTC 2 cut(s) 130, 215
PscI ACATGT 1 cut(s) 258
PsuI RGATCY 1 cut(s) 203
RsaI GTAC 2 cut(s) 138, 617
RsaNI GTAC 2 cut(s) 137, 616
SaqAI TTAA 3 cut(s) 90, 251, 612
SatI GCNGC 4 cut(s) 336, 391, 465, 581
Sau3AI GATC 3 cut(s) 174, 203, 655
SchI GAGTC 2 cut(s) 131, 215
SduI GDGCHC 2 cut(s) 119, 374
SetI ASST 4 cut(s) 87, 146, 355, 408
SfaNI GCATC 3 cut(s) 168, 289, 742
SmlI CTYRAG 1 cut(s) 659
SmoI CTYRAG 1 cut(s) 659
SphI GCATGC 2 cut(s) 9, 420
Sse9I AATT 6 cut(s) 31, 104, 341, 501, 556, 603
SsiI CCGC 2 cut(s) 377, 390
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 2 cut(s) 67, 361
TaiI ACGT 1 cut(s) 408
TaqI TCGA 4 cut(s) 263, 282, 591, 628
TasI AATT 6 cut(s) 31, 104, 341, 501, 556, 603
TatI WGTACW 1 cut(s) 136
TauI GCSGC 1 cut(s) 393
TfiI GAWTC 2 cut(s) 314, 550
Tru1I TTAA 3 cut(s) 90, 251, 612
Tru9I TTAA 3 cut(s) 90, 251, 612
TscAI CASTG 1 cut(s) 649
TseFI GTSAC 2 cut(s) 353, 647
TseI GCWGC 3 cut(s) 335, 464, 580
Tsp45I GTSAC 2 cut(s) 353, 647
TspDTI ATGAA 1 cut(s) 413
TspRI CASTG 1 cut(s) 649
Van91I CCANNNNNTGG 1 cut(s) 451
VneI GTGCAC 1 cut(s) 115
XapI RAATTY 3 cut(s) 31, 341, 556
XceI RCATGY 3 cut(s) 9, 262, 420
XmnI GAANNNNTTC 2 cut(s) 505, 748
Zsp2I ATGCAT 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.