Rmu_ssc0000388.1_g000067

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000388.1
OG0015570
Physical Location & Seq
Forward (+)
325931 .. 327627
1697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000388.1_g000067.1.cds

Sequence Viewer

Length: 762 bp
atggcatgctttgtacctttcaataataggaacttggatataagcatcttcgtgtttaggccaacagtagtacacgttgatgaacttcttgctgggctcaagcaattctctctgtgcaccgagacacttggttgtgtacaaagttctatcttgcagagcatccatggaaatatgatcatatggtttggagcatggctgaagagatcttctgagaataaggattcattgactgcaagccttctctcaatgctctcgaacctatcaacaaaggcgaccttagtcgatcacaccttcttcgatgcttatgcaggagaatcaagagatgggtcttgtgcggcaaagttctgcaccggcgacacagtctcaatgagtgcagcagccttcaacggtgccggtgacgttagcgatgtctcttatgcatgcttagctctcttcaagtctagtttccacaagatggaaggcgtgagatctggggtttgtttgaaatcccaaaccaacccaagcattgcttgtttctacgtgtggaagtctcttcaatattgttactcgtggattctaagatcggaccaaagaaaagcactgctcccttattttgaaagctactctatcgatgttaagtatgacatttttagagtagtatatgttggtggtgacaatgaacccaagtttcagttcttctatcctcaccagatattggagcaaacagctggaggagaaagcaaagatgaaggtaagcttaggcatagtgcttccattatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

253

Amino Acids

28.15

Weight (kDa)

6.58

Isoelectric Point (pI)

57.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015570)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g05030
malus_domestica MD05G1279400.v1.1 MD10G1258100.v1.1
prunus_persica Prupe.4G085700_v2.0.a1
pyrus_communis pycom05g25970 pycom10g21440
rosa_chinensis RchiOBHm_Chr5g0014941
rosa_laevigata RLG00000032152
rosa_multiflora Rmu_ssc0000388.1_g000067
rosa_roxburghii Rroxscaffold_1G00061640
rosa_rugosa Rorug05G0021700
rosa_samantha Rh5AG117300 Rh5BG114300 Rh5CG125800 Rh5DG113700
rosa_wichuraiana Rw5G010100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 389
AccB7I CCANNNNNTGG 2 cut(s) 454, 694
AciI CCGC 1 cut(s) 335
AcuI CTGAAG 1 cut(s) 218
AfaI GTAC 3 cut(s) 15, 72, 138
AfiI CCNNNNNNNGG 2 cut(s) 454, 694
AflIII ACRYGT 2 cut(s) 73, 519
AgsI TTSAA 6 cut(s) 22, 385, 436, 484, 536, 596
AjuI GAANNNNNNNTTGG 2 cut(s) 656, 688
AluBI AGCT 4 cut(s) 428, 600, 707, 736
AluI AGCT 4 cut(s) 428, 600, 707, 736
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 4 cut(s) 116, 367, 415, 534
Alw44I GTGCAC 1 cut(s) 115
AoxI GGCC 1 cut(s) 59
ApaLI GTGCAC 1 cut(s) 115
ApeKI GCWGC 2 cut(s) 374, 377
AspS9I GGNCC 1 cut(s) 565
AsuHPI GGTGA 3 cut(s) 407, 662, 677
AvaII GGWCC 1 cut(s) 565
BaeGI GKGCMC 1 cut(s) 119
BanI GGYRCC 1 cut(s) 389
BanII GRGCYC 1 cut(s) 99
BauI CACGAG 1 cut(s) 547
Bbv12I GWGCWC 1 cut(s) 119
BbvI GCAGC 2 cut(s) 386, 389
BccI CCATC 2 cut(s) 317, 448
BcgI CGANNNNNNTGC 2 cut(s) 287, 321
BclI TGATCA 1 cut(s) 174
BcoDI GTCTC 4 cut(s) 116, 367, 415, 534
BfaI CTAG 1 cut(s) 441
BglII AGATCT 2 cut(s) 203, 467
BisI GCNGC 3 cut(s) 336, 375, 378
BlpI GCTNAGC 1 cut(s) 424
BlsI GCNGC 3 cut(s) 337, 376, 379
Bme18I GGWCC 1 cut(s) 565
BmgT120I GGNCC 1 cut(s) 565
BmiI GGNNCC 1 cut(s) 391
BmsI GCATC 3 cut(s) 54, 168, 289
BoxI GACNNNNGTC 1 cut(s) 278
BpmI CTGGAG 1 cut(s) 729
Bpu10I CCTNAGC 1 cut(s) 737
Bpu1102I GCTNAGC 1 cut(s) 424
BpuEI CTTGAG 1 cut(s) 83
Bsa29I ATCGAT 1 cut(s) 609
BsaAI YACGTR 1 cut(s) 520
BsaJI CCNNGG 1 cut(s) 163
Bsc4I CCNNNNNNNGG 2 cut(s) 454, 694
Bse118I RCCGGY 2 cut(s) 350, 392
Bse3DI GCAATG 1 cut(s) 504
BseCI ATCGAT 1 cut(s) 609
BseDI CCNNGG 1 cut(s) 163
BseGI GGATG 1 cut(s) 159
BseLI CCNNNNNNNGG 2 cut(s) 454, 694
BseMI GCAATG 1 cut(s) 504
BseMII CTCAG 1 cut(s) 201
BseRI GAGGAG 1 cut(s) 726
BseSI GKGCMC 1 cut(s) 119
BseXI GCAGC 2 cut(s) 386, 389
BseYI CCCAGC 1 cut(s) 92
BsgI GTGCAG 2 cut(s) 331, 393
BshFI GGCC 1 cut(s) 61
BshNI GGYRCC 1 cut(s) 389
BshVI ATCGAT 1 cut(s) 609
BsiHKAI GWGCWC 1 cut(s) 119
BsiSI CCGG 2 cut(s) 351, 393
BslI CCNNNNNNNGG 2 cut(s) 454, 694
BsmAI GTCTC 4 cut(s) 116, 367, 415, 534
BsnI GGCC 1 cut(s) 61
Bsp1286I GDGCHC 2 cut(s) 99, 119
Bsp1407I TGTACA 1 cut(s) 136
Bsp143I GATC 5 cut(s) 174, 203, 283, 467, 560
Bsp1720I GCTNAGC 1 cut(s) 424
Bsp19I CCATGG 1 cut(s) 163
BspACI CCGC 1 cut(s) 335
BspANI GGCC 1 cut(s) 61
BspCNI CTCAG 1 cut(s) 202
BspDI ATCGAT 1 cut(s) 609
BspLI GGNNCC 1 cut(s) 391
BspT107I GGYRCC 1 cut(s) 389
BsrDI GCAATG 1 cut(s) 504
BsrFI RCCGGY 2 cut(s) 350, 392
BsrGI TGTACA 1 cut(s) 136
BssAI RCCGGY 2 cut(s) 350, 392
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 5 cut(s) 174, 203, 283, 467, 560
BssSI CACGAG 1 cut(s) 547
BssT1I CCWWGG 1 cut(s) 163
Bst2BI CACGAG 1 cut(s) 547
Bst4CI ACNGT 3 cut(s) 67, 361, 389
Bst6I CTCTTC 3 cut(s) 194, 437, 537
BstAUI TGTACA 1 cut(s) 136
BstBAI YACGTR 1 cut(s) 520
BstC8I GCNNGC 3 cut(s) 7, 235, 421
BstDEI CTNAG 5 cut(s) 210, 277, 424, 557, 737
BstDSI CCRYGG 1 cut(s) 163
BstF5I GGATG 1 cut(s) 159
BstKTI GATC 5 cut(s) 177, 206, 286, 470, 563
BstMAI GTCTC 4 cut(s) 116, 367, 415, 534
BstMBI GATC 5 cut(s) 174, 203, 283, 467, 560
BstMWI GCNNNNNNNGC 1 cut(s) 425
BstNSI RCATGY 2 cut(s) 9, 423
BstPAI GACNNNNGTC 1 cut(s) 278
BstSLI GKGCMC 1 cut(s) 119
BstV1I GCAGC 2 cut(s) 386, 389
BstX2I RGATCY 2 cut(s) 203, 467
BstYI RGATCY 2 cut(s) 203, 467
Bsu15I ATCGAT 1 cut(s) 609
BsuRI GGCC 1 cut(s) 61
BsuTUI ATCGAT 1 cut(s) 609
BtgI CCRYGG 1 cut(s) 163
BtgZI GCGATG 1 cut(s) 420
BtsCI GGATG 1 cut(s) 159
BtsI GCAGTG 1 cut(s) 578
BtsIMutI CAGTG 1 cut(s) 578
Cac8I GCNNGC 3 cut(s) 7, 235, 421
Cfr10I RCCGGY 2 cut(s) 350, 392
Cfr13I GGNCC 1 cut(s) 565
ClaI ATCGAT 1 cut(s) 609
Csp6I GTAC 3 cut(s) 14, 71, 137
CviAII CATG 4 cut(s) 6, 164, 192, 420
CviJI RGCY 9 cut(s) 61, 97, 196, 237, 380, 428, 600, 707, 736
CviKI_1 RGCY 9 cut(s) 61, 97, 196, 237, 380, 428, 600, 707, 736
CviQI GTAC 3 cut(s) 14, 71, 137
DdeI CTNAG 5 cut(s) 210, 277, 424, 557, 737
DpnI GATC 5 cut(s) 176, 205, 285, 469, 562
DpnII GATC 5 cut(s) 174, 203, 283, 467, 560
Eam1104I CTCTTC 3 cut(s) 194, 437, 537
EarI CTCTTC 3 cut(s) 194, 437, 537
Eco130I CCWWGG 1 cut(s) 163
Eco24I GRGCYC 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 565
Eco57I CTGAAG 1 cut(s) 218
EcoT14I CCWWGG 1 cut(s) 163
EcoT22I ATGCAT 1 cut(s) 421
EcoT38I GRGCYC 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 163
FaeI CATG 4 cut(s) 9, 167, 195, 423
FalI AAGNNNNNCTT 6 cut(s) 260, 292, 493, 525, 720, 752
FatI CATG 4 cut(s) 5, 163, 191, 419
FauNDI CATATG 1 cut(s) 179
FbaI TGATCA 1 cut(s) 174
Fnu4HI GCNGC 3 cut(s) 336, 375, 378
FokI GGATG 1 cut(s) 146
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 3 cut(s) 336, 375, 378
FspBI CTAG 1 cut(s) 441
GluI GCNGC 3 cut(s) 336, 375, 378
GsaI CCCAGC 1 cut(s) 96
GsuI CTGGAG 1 cut(s) 729
HaeIII GGCC 1 cut(s) 61
HapII CCGG 2 cut(s) 351, 393
Hin1II CATG 4 cut(s) 9, 167, 195, 423
HindIII AAGCTT 1 cut(s) 734
HinfI GANTC 3 cut(s) 221, 314, 553
HpaII CCGG 2 cut(s) 351, 393
HphI GGTGA 3 cut(s) 407, 662, 677
Hpy166II GTNNAC 3 cut(s) 73, 117, 137
Hpy188I TCNGA 3 cut(s) 211, 565, 761
Hpy188III TCNNGA 2 cut(s) 253, 318
Hpy8I GTNNAC 3 cut(s) 73, 117, 137
HpyAV CCTTC 5 cut(s) 248, 301, 391, 452, 722
HpyCH4III ACNGT 3 cut(s) 67, 361, 389
HpyCH4IV ACGT 3 cut(s) 75, 399, 519
HpyCH4V TGCA 7 cut(s) 117, 154, 233, 308, 348, 374, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 425
HpyF3I CTNAG 5 cut(s) 210, 277, 424, 557, 737
HpySE526I ACGT 3 cut(s) 75, 399, 519
Hsp92II CATG 4 cut(s) 9, 167, 195, 423
Ksp22I TGATCA 1 cut(s) 174
Kzo9I GATC 5 cut(s) 174, 203, 283, 467, 560
LmnI GCTCC 3 cut(s) 188, 588, 697
LpnPI CCDG 7 cut(s) 78, 294, 364, 406, 456, 693, 701
Lsp1109I GCAGC 2 cut(s) 386, 389
LweI GCATC 3 cut(s) 54, 168, 289
MaeI CTAG 1 cut(s) 441
MaeII ACGT 3 cut(s) 75, 399, 519
MaeIII GTNAC 3 cut(s) 395, 542, 650
MalI GATC 5 cut(s) 176, 205, 285, 469, 562
MboI GATC 5 cut(s) 174, 203, 283, 467, 560
MboII GAAGA 7 cut(s) 40, 198, 211, 286, 424, 524, 667
MflI RGATCY 2 cut(s) 203, 467
MhlI GDGCHC 2 cut(s) 99, 119
MluCI AATT 1 cut(s) 104
MnlI CCTC 2 cut(s) 693, 704
Mph1103I ATGCAT 1 cut(s) 421
MseI TTAA 1 cut(s) 615
MslI CAYNNNNRTG 2 cut(s) 50, 78
MspA1I CMGCKG 1 cut(s) 707
MspI CCGG 2 cut(s) 351, 393
MwoI GCNNNNNNNGC 1 cut(s) 425
NcoI CCATGG 1 cut(s) 163
NdeI CATATG 1 cut(s) 179
NdeII GATC 5 cut(s) 174, 203, 283, 467, 560
NlaIII CATG 4 cut(s) 9, 167, 195, 423
NlaIV GGNNCC 1 cut(s) 391
NmuCI GTSAC 2 cut(s) 395, 650
NsiI ATGCAT 1 cut(s) 421
NspI RCATGY 2 cut(s) 9, 423
PaeI GCATGC 2 cut(s) 9, 423
PfeI GAWTC 3 cut(s) 221, 314, 553
PflFI GACNNNGTC 1 cut(s) 359
PflMI CCANNNNNTGG 2 cut(s) 454, 694
PkrI GCNGC 3 cut(s) 337, 376, 379
Ppu21I YACGTR 1 cut(s) 520
PshAI GACNNNNGTC 1 cut(s) 278
PspFI CCCAGC 1 cut(s) 92
PspN4I GGNNCC 1 cut(s) 391
PspPI GGNCC 1 cut(s) 565
PsuI RGATCY 2 cut(s) 203, 467
PsyI GACNNNGTC 1 cut(s) 359
PvuII CAGCTG 1 cut(s) 707
RsaI GTAC 3 cut(s) 15, 72, 138
RsaNI GTAC 3 cut(s) 14, 71, 137
RseI CAYNNNNRTG 2 cut(s) 50, 78
SaqAI TTAA 1 cut(s) 615
SatI GCNGC 3 cut(s) 336, 375, 378
Sau3AI GATC 5 cut(s) 174, 203, 283, 467, 560
Sau96I GGNCC 1 cut(s) 565
SduI GDGCHC 2 cut(s) 99, 119
SfaNI GCATC 3 cut(s) 54, 168, 289
SgrAI CRCCGGYG 1 cut(s) 350
SinI GGWCC 1 cut(s) 565
SmiMI CAYNNNNRTG 2 cut(s) 50, 78
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
SphI GCATGC 2 cut(s) 9, 423
Sse9I AATT 1 cut(s) 104
SsiI CCGC 1 cut(s) 335
SspI AATATT 1 cut(s) 539
SspMI CTAG 1 cut(s) 441
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 3 cut(s) 67, 361, 389
TaiI ACGT 3 cut(s) 78, 402, 522
TaqI TCGA 4 cut(s) 254, 282, 297, 609
TasI AATT 1 cut(s) 104
TatI WGTACW 2 cut(s) 70, 136
TauI GCSGC 1 cut(s) 338
TfiI GAWTC 3 cut(s) 221, 314, 553
Tru1I TTAA 1 cut(s) 615
Tru9I TTAA 1 cut(s) 615
TscAI CASTG 1 cut(s) 585
TseFI GTSAC 2 cut(s) 395, 650
TseI GCWGC 2 cut(s) 374, 377
Tsp45I GTSAC 2 cut(s) 395, 650
TspDTI ATGAA 4 cut(s) 96, 213, 672, 741
TspRI CASTG 1 cut(s) 585
Tth111I GACNNNGTC 1 cut(s) 359
Van91I CCANNNNNTGG 2 cut(s) 454, 694
VneI GTGCAC 1 cut(s) 115
VpaK11BI GGWCC 1 cut(s) 565
XceI RCATGY 2 cut(s) 9, 423
XspI CTAG 1 cut(s) 441
Zsp2I ATGCAT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.