Rroxscaffold_1G00061640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0015570
Physical Location & Seq
Reverse (-)
83740483 .. 83742709
2227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00061640.1

Sequence Viewer

Length: 519 bp
ATGAACTTTCTTGCTGGGCTCAAGCAATTCTCTCTGTGCACGGAGACTCTTGGTTGTGTACAAAGTTCTATCTTGCAGAGCATCCATGGAAATATGATCATATGGTTTGGAGCATGGCTGAAGAGATCTTCTGAGAATAAGGATTCATTGACTGCAAGTCTTCTCTCGTTGCTCTCGAACCTATCAACAAAGGCGACGTTAGTCGATCACACCTTCTTCGATGCATATGCAGGAGAATCAAGAGACGGGTCTTGTGCTGCAAAGTTCTGCACCGGCGACACAGTCTCAATGAGTGCAGCAGCCTTCAACGGTGCCGGTGACGTTAGCGATGTCTCTTATGCATGCTTAGCTCTCTTCAAGTCCAGTTTCCACAAGATGGAAGGCGTGAGATCTGGGGTTTGTTTGAAATCCCAAACCAACCCAAGCATTGCTTGTTTCTACGTGTGGAAGTCTCTTCAATATTGTTACTCGTGGATTCTAAGCTCGGACCAAAGAAAAGCACTGCTCCCCTTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

18.74

Weight (kDa)

8.11

Isoelectric Point (pI)

58.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7392 PF24118 72 - 172 7.8e-47 Domain of unknown function (DUF7392)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015570)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g05030
malus_domestica MD05G1279400.v1.1 MD10G1258100.v1.1
prunus_persica Prupe.4G085700_v2.0.a1
pyrus_communis pycom05g25970 pycom10g21440
rosa_chinensis RchiOBHm_Chr5g0014941
rosa_laevigata RLG00000032152
rosa_multiflora Rmu_ssc0000388.1_g000067
rosa_roxburghii Rroxscaffold_1G00061640
rosa_rugosa Rorug05G0021700
rosa_samantha Rh5AG117300 Rh5BG114300 Rh5CG125800 Rh5DG113700
rosa_wichuraiana Rw5G010100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 311
AccB7I CCANNNNNTGG 1 cut(s) 376
AcuI CTGAAG 1 cut(s) 140
AfaI GTAC 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 376
AflIII ACRYGT 1 cut(s) 441
AgsI TTSAA 4 cut(s) 307, 358, 406, 458
AhdI GACNNNNNGTC 1 cut(s) 156
AluBI AGCT 2 cut(s) 350, 483
AluI AGCT 2 cut(s) 350, 483
Alw21I GWGCWC 1 cut(s) 41
Alw26I GTCTC 5 cut(s) 38, 237, 289, 337, 456
Alw44I GTGCAC 1 cut(s) 37
ApaLI GTGCAC 1 cut(s) 37
ApeKI GCWGC 3 cut(s) 257, 296, 299
AspS9I GGNCC 1 cut(s) 487
AsuHPI GGTGA 1 cut(s) 329
AvaII GGWCC 1 cut(s) 487
BaeGI GKGCMC 1 cut(s) 41
BanI GGYRCC 1 cut(s) 311
BanII GRGCYC 1 cut(s) 21
BauI CACGAG 1 cut(s) 469
BbsI GAAGAC 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 41
BbvI GCAGC 3 cut(s) 244, 308, 311
BccI CCATC 1 cut(s) 370
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BclI TGATCA 1 cut(s) 96
BcoDI GTCTC 5 cut(s) 38, 237, 289, 337, 456
BglII AGATCT 2 cut(s) 125, 389
BisI GCNGC 3 cut(s) 258, 297, 300
BlpI GCTNAGC 1 cut(s) 346
BlsI GCNGC 3 cut(s) 259, 298, 301
Bme18I GGWCC 1 cut(s) 487
BmeRI GACNNNNNGTC 1 cut(s) 156
BmgT120I GGNCC 1 cut(s) 487
BmiI GGNNCC 1 cut(s) 313
BmsI GCATC 2 cut(s) 90, 211
BoxI GACNNNNGTC 1 cut(s) 200
BpiI GAAGAC 1 cut(s) 152
Bpu1102I GCTNAGC 1 cut(s) 346
BpuEI CTTGAG 1 cut(s) 5
BsaAI YACGTR 1 cut(s) 442
BsaJI CCNNGG 1 cut(s) 85
Bsc4I CCNNNNNNNGG 1 cut(s) 376
Bse118I RCCGGY 2 cut(s) 272, 314
Bse1I ACTGG 1 cut(s) 363
Bse3DI GCAATG 1 cut(s) 426
BseDI CCNNGG 1 cut(s) 85
BseGI GGATG 1 cut(s) 81
BseLI CCNNNNNNNGG 1 cut(s) 376
BseMI GCAATG 1 cut(s) 426
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 363
BseSI GKGCMC 1 cut(s) 41
BseXI GCAGC 3 cut(s) 244, 308, 311
BseYI CCCAGC 1 cut(s) 14
BsgI GTGCAG 2 cut(s) 253, 315
BshNI GGYRCC 1 cut(s) 311
BsiHKAI GWGCWC 1 cut(s) 41
BsiSI CCGG 2 cut(s) 273, 315
BslI CCNNNNNNNGG 1 cut(s) 376
BsmAI GTCTC 5 cut(s) 38, 237, 289, 337, 456
BsmBI CGTCTC 1 cut(s) 237
Bsp1286I GDGCHC 2 cut(s) 21, 41
Bsp1407I TGTACA 1 cut(s) 58
Bsp143I GATC 4 cut(s) 96, 125, 205, 389
Bsp1720I GCTNAGC 1 cut(s) 346
Bsp19I CCATGG 1 cut(s) 85
BspCNI CTCAG 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 313
BspT107I GGYRCC 1 cut(s) 311
BsrDI GCAATG 1 cut(s) 426
BsrFI RCCGGY 2 cut(s) 272, 314
BsrGI TGTACA 1 cut(s) 58
BsrI ACTGG 1 cut(s) 363
BssAI RCCGGY 2 cut(s) 272, 314
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 4 cut(s) 96, 125, 205, 389
BssSI CACGAG 1 cut(s) 469
BssT1I CCWWGG 1 cut(s) 85
Bst2BI CACGAG 1 cut(s) 469
Bst4CI ACNGT 2 cut(s) 283, 311
Bst6I CTCTTC 3 cut(s) 116, 359, 459
BstAUI TGTACA 1 cut(s) 58
BstBAI YACGTR 1 cut(s) 442
BstC8I GCNNGC 1 cut(s) 343
BstDEI CTNAG 3 cut(s) 132, 346, 479
BstDSI CCRYGG 1 cut(s) 85
BstF5I GGATG 1 cut(s) 81
BstKTI GATC 4 cut(s) 99, 128, 208, 392
BstMAI GTCTC 5 cut(s) 38, 237, 289, 337, 456
BstMBI GATC 4 cut(s) 96, 125, 205, 389
BstMWI GCNNNNNNNGC 1 cut(s) 347
BstNSI RCATGY 1 cut(s) 345
BstPAI GACNNNNGTC 1 cut(s) 200
BstSLI GKGCMC 1 cut(s) 41
BstV1I GCAGC 3 cut(s) 244, 308, 311
BstV2I GAAGAC 1 cut(s) 152
BstX2I RGATCY 2 cut(s) 125, 389
BstYI RGATCY 2 cut(s) 125, 389
BtgI CCRYGG 1 cut(s) 85
BtgZI GCGATG 1 cut(s) 342
BtsCI GGATG 1 cut(s) 81
BtsI GCAGTG 1 cut(s) 500
BtsIMutI CAGTG 1 cut(s) 500
Cac8I GCNNGC 1 cut(s) 343
Cfr10I RCCGGY 2 cut(s) 272, 314
Cfr13I GGNCC 1 cut(s) 487
Csp6I GTAC 1 cut(s) 59
CviAII CATG 3 cut(s) 86, 114, 342
CviJI RGCY 5 cut(s) 19, 118, 302, 350, 483
CviKI_1 RGCY 5 cut(s) 19, 118, 302, 350, 483
CviQI GTAC 1 cut(s) 59
DdeI CTNAG 3 cut(s) 132, 346, 479
DpnI GATC 4 cut(s) 98, 127, 207, 391
DpnII GATC 4 cut(s) 96, 125, 205, 389
DriI GACNNNNNGTC 1 cut(s) 156
Eam1104I CTCTTC 3 cut(s) 116, 359, 459
Eam1105I GACNNNNNGTC 1 cut(s) 156
EarI CTCTTC 3 cut(s) 116, 359, 459
Eco130I CCWWGG 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 487
Eco57I CTGAAG 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 85
EcoT22I ATGCAT 2 cut(s) 226, 343
EcoT38I GRGCYC 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 85
Esp3I CGTCTC 1 cut(s) 237
FaeI CATG 3 cut(s) 89, 117, 345
FaiI YATR 9 cut(s) 87, 95, 101, 103, 115, 226, 228, 339, 343
FalI AAGNNNNNCTT 2 cut(s) 415, 447
FatI CATG 3 cut(s) 85, 113, 341
FauNDI CATATG 2 cut(s) 101, 226
FbaI TGATCA 1 cut(s) 96
Fnu4HI GCNGC 3 cut(s) 258, 297, 300
FokI GGATG 1 cut(s) 68
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 3 cut(s) 258, 297, 300
GluI GCNGC 3 cut(s) 258, 297, 300
GsaI CCCAGC 1 cut(s) 18
HapII CCGG 2 cut(s) 273, 315
Hin1II CATG 3 cut(s) 89, 117, 345
HinfI GANTC 4 cut(s) 46, 143, 236, 475
HpaII CCGG 2 cut(s) 273, 315
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 2 cut(s) 39, 59
Hpy188I TCNGA 2 cut(s) 133, 487
Hpy188III TCNNGA 2 cut(s) 175, 240
Hpy8I GTNNAC 2 cut(s) 39, 59
Hpy99I CGWCG 1 cut(s) 199
HpyAV CCTTC 3 cut(s) 223, 313, 374
HpyCH4III ACNGT 2 cut(s) 283, 311
HpyCH4IV ACGT 3 cut(s) 197, 321, 441
HpyCH4V TGCA 9 cut(s) 39, 76, 155, 224, 230, 260, 270, 296, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 347
HpyF3I CTNAG 3 cut(s) 132, 346, 479
HpySE526I ACGT 3 cut(s) 197, 321, 441
Hsp92II CATG 3 cut(s) 89, 117, 345
Ksp22I TGATCA 1 cut(s) 96
Kzo9I GATC 4 cut(s) 96, 125, 205, 389
LmnI GCTCC 2 cut(s) 110, 510
LpnPI CCDG 5 cut(s) 216, 286, 328, 376, 378
Lsp1109I GCAGC 3 cut(s) 244, 308, 311
LweI GCATC 2 cut(s) 90, 211
MaeII ACGT 3 cut(s) 197, 321, 441
MaeIII GTNAC 2 cut(s) 317, 464
MalI GATC 4 cut(s) 98, 127, 207, 391
MboI GATC 4 cut(s) 96, 125, 205, 389
MboII GAAGA 6 cut(s) 120, 133, 152, 208, 346, 446
MflI RGATCY 2 cut(s) 125, 389
MhlI GDGCHC 2 cut(s) 21, 41
MluCI AATT 1 cut(s) 26
MlyI GAGTC 1 cut(s) 40
Mph1103I ATGCAT 2 cut(s) 226, 343
MspI CCGG 2 cut(s) 273, 315
MwoI GCNNNNNNNGC 1 cut(s) 347
NcoI CCATGG 1 cut(s) 85
NdeI CATATG 2 cut(s) 101, 226
NdeII GATC 4 cut(s) 96, 125, 205, 389
NlaIII CATG 3 cut(s) 89, 117, 345
NlaIV GGNNCC 1 cut(s) 313
NmuCI GTSAC 1 cut(s) 317
NsiI ATGCAT 2 cut(s) 226, 343
NspI RCATGY 1 cut(s) 345
PaeI GCATGC 1 cut(s) 345
PcsI WCGNNNNNNNCGW 1 cut(s) 173
PfeI GAWTC 3 cut(s) 143, 236, 475
PflFI GACNNNGTC 1 cut(s) 281
PflMI CCANNNNNTGG 1 cut(s) 376
PkrI GCNGC 3 cut(s) 259, 298, 301
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
Ppu21I YACGTR 1 cut(s) 442
PshAI GACNNNNGTC 1 cut(s) 200
PspFI CCCAGC 1 cut(s) 14
PspN4I GGNNCC 1 cut(s) 313
PspPI GGNCC 1 cut(s) 487
PsuI RGATCY 2 cut(s) 125, 389
PsyI GACNNNGTC 1 cut(s) 281
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
SatI GCNGC 3 cut(s) 258, 297, 300
Sau3AI GATC 4 cut(s) 96, 125, 205, 389
Sau96I GGNCC 1 cut(s) 487
SchI GAGTC 1 cut(s) 40
SduI GDGCHC 2 cut(s) 21, 41
SetI ASST 7 cut(s) 183, 200, 215, 324, 352, 444, 485
SfaNI GCATC 2 cut(s) 90, 211
SgrAI CRCCGGYG 1 cut(s) 272
SinI GGWCC 1 cut(s) 487
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
SphI GCATGC 1 cut(s) 345
Sse9I AATT 1 cut(s) 26
SspI AATATT 1 cut(s) 461
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 2 cut(s) 283, 311
TaiI ACGT 3 cut(s) 200, 324, 444
TaqI TCGA 3 cut(s) 176, 204, 219
TasI AATT 1 cut(s) 26
TatI WGTACW 1 cut(s) 58
TfiI GAWTC 3 cut(s) 143, 236, 475
TscAI CASTG 1 cut(s) 507
TseFI GTSAC 1 cut(s) 317
TseI GCWGC 3 cut(s) 257, 296, 299
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 2 cut(s) 17, 135
TspGWI ACGGA 1 cut(s) 56
TspRI CASTG 1 cut(s) 507
Tth111I GACNNNGTC 1 cut(s) 281
Van91I CCANNNNNTGG 1 cut(s) 376
VneI GTGCAC 1 cut(s) 37
VpaK11BI GGWCC 1 cut(s) 487
XceI RCATGY 1 cut(s) 345
Zsp2I ATGCAT 2 cut(s) 226, 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.