Rorug05G0021700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0015570
Physical Location & Seq
Forward (+)
1399126 .. 1402528
3403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0021700.1

Sequence Viewer

Length: 1887 bp
ATGGCAAAGAAGAAAATGAAATTGAGCAGCCAAGGTCCTTATGTTACAATGGACAATGGGTTGGTGAAGCTTACAATTGTGAAGCCTCAAGGGTATATAATTGGCATTGCTTATGGAGGAGTGGACAACCTTCTGGATGCTAAGTCCAATGAATCAAGTCGAGGACTGGAAGGAGGTGAATATAGTGTTGTCCAAATGAACAAAGAAAGTTTAGAGGTTTCCTTCAAGAACACTTACGATCCATGGTCAGCTCGAAGCACAGATTTGCCTCTCACCGTGGACATAAGGTACATAGTAAGGACTGGTGTTTCAGGCTTCTACTGCTATGGAATTTATGAGCGGCCATCTGGTTGTCCAGCTTTCGATCTTGCTCAGACAAGACTGGTGTTTAAGCTTAGAAAAGACAAGTTCCACTACATGGCAATAACAGATGAGAAACAAAGGGTAATGCCTATGCCTGAGGATCTGCTTCCAGGTAGAGGCAAGCAACTAATTGTACCAGAGTCAGTTTTGCTAGTAAATCCCATAAATCCAGATCTCAAAGGGGAGGTTGACGATAAGTATATGTATTCAATGGATAACAAAGATAGTGGACTCCATGGATGGATAGGTTCTGGCCCCATTATCGGATTTTGGACCATCCTTCCGAGCCAGGAGTTCAGAAATGGAGGACCTACAAAGCAAAACCTCACAGTTCACACTGGTCCAACCTGCCTTGCAATGTTTCAGGGAACACATTATCTTGGGTTAGATATGGTAGCTCAATTCGAAGAGGGAGAGACATGGAAGAAGGTGTTTGGACCCGTCTTTATATACCTTAACTCAACACCAGATACATCAAAAGCCCACAATTTATGGACAGATGCAAAGAAACAGAGGCTGTTTGAAGAGACAGTGTGGCCTTATGATTTTGTCTCGTCACTCAACTATGTTGCTGCAAAAGACCGCGGTTCAGTTTCTGGAAGATTGTTAGTGCAGGACAGGTATATTTCGGGTTCTCTCATTCCTGCTAAAAATGCTTATATTGGTCTCTCGGTTGCAACTACTGCAGGATCATGGCAACTTGAAAGCAAGGGCTATCAGTTCTGGGTACAAACAGATTCAAATGGAAACTTTACTATCAAGAATGTGATCCCTGGAGTATATGGACTTCATGGCTGGGTTCCTGGTTTCATGGGTGATTACCTTCACAAAGAACAAATCACTATCTCTGAAGGAAAACAAACAGAACTTCAGAATCTAACCTATGTTCCCCCGAGAGATGGTCCAACATTATGGGAGATTGGCTTCCCTGATCGAACAGCCATAGGTGACTTTGTTCCGGATGTGAACCCAATGTATGTCAACAAGCTGTTCATCAACAGCCCCGAAAAGTACAGACAATATGGCTTATGGGACAGATACACTGACATACACCCTCAACTTGACCAAATCTACACTATAGGAATCAGTAATCCCAAAACAGACTGGTTCTTTGCTCATGTGGACAGGAGAGGGCCAGGGAATAAGTATGTTCCAACAACATGGACAATCAAGTTCAATCTCAATTCAGTAACTACTGGCACTTACCAGCTGAGACTGTCCATTGCTTCAGCAACCCGCTCAGACCTTGAGGTCCATGTTAACTATATGGATACAGGGCACCTGGTGTTTCAAGAGTTGAACTTGGGCACAGACAACACAATTTGTCGACATGGAATTCATGGATTCTATTGCCTTTTCAGCGCCAACTTTCCCTCAACGTTGCTGGTGAAGGGAGATAATTCCATTTTTTTCACACAGGCGAGGGGTGGCGATTCACTTTGTGGAGTTCTCTATGATTATATAAGACTAGAAGCTCCTGCAACTTCAGAGAGCCCTAAAAGCTTATACCCCCCTATTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

628

Amino Acids

70.6

Weight (kDa)

6.38

Isoelectric Point (pI)

33.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhamnogal_lyase PF06045 4 - 184 1.7e-56 Rhamnogalacturonate lyase family
fn3_3 PF14686 338 - 411 9.5e-23 Polysaccharide lyase family 4, domain II
CBM-like PF14683 424 - 611 1.6e-39 Polysaccharide lyase family 4, domain III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015570)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g05030
malus_domestica MD05G1279400.v1.1 MD10G1258100.v1.1
prunus_persica Prupe.4G085700_v2.0.a1
pyrus_communis pycom05g25970 pycom10g21440
rosa_chinensis RchiOBHm_Chr5g0014941
rosa_laevigata RLG00000032152
rosa_multiflora Rmu_ssc0000388.1_g000067
rosa_roxburghii Rroxscaffold_1G00061640
rosa_rugosa Rorug05G0021700
rosa_samantha Rh5AG117300 Rh5BG114300 Rh5CG125800 Rh5DG113700
rosa_wichuraiana Rw5G010100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1613
Acc36I ACCTGC 1 cut(s) 719
AccB1I GGYRCC 1 cut(s) 1641
AccB7I CCANNNNNTGG 1 cut(s) 418
AccBSI CCGCTC 2 cut(s) 340, 1602
AccI GTMKAC 1 cut(s) 1690
AccII CGCG 1 cut(s) 948
AccIII TCCGGA 1 cut(s) 1321
AciI CCGC 4 cut(s) 340, 946, 948, 1600
AclI AACGTT 1 cut(s) 1742
AclWI GGATC 4 cut(s) 233, 471, 1060, 1126
AcoI YGGCCR 1 cut(s) 341
AcsI RAATTY 2 cut(s) 330, 1698
AcuI CTGAAG 4 cut(s) 1217, 1233, 1575, 1833
AdeI CACNNNGTG 2 cut(s) 1648, 1805
AfaI GTAC 4 cut(s) 290, 498, 1092, 1376
AfiI CCNNNNNNNGG 4 cut(s) 418, 479, 626, 1262
AgsI TTSAA 8 cut(s) 226, 573, 887, 1067, 1104, 1540, 1655, 1663
AjnI CCWGG 6 cut(s) 472, 651, 1135, 1165, 1498, 1644
AluBI AGCT 9 cut(s) 70, 251, 359, 394, 761, 1351, 1573, 1838, 1866
AluI AGCT 9 cut(s) 70, 251, 359, 394, 761, 1351, 1573, 1838, 1866
Alw26I GTCTC 5 cut(s) 773, 884, 919, 1034, 1570
AlwI GGATC 4 cut(s) 233, 471, 1060, 1126
AlwNI CAGNNNCTG 2 cut(s) 880, 959
Ama87I CYCGRG 1 cut(s) 1255
Aor13HI TCCGGA 1 cut(s) 1321
AoxI GGCC 4 cut(s) 341, 616, 899, 1496
ApeKI GCWGC 2 cut(s) 27, 935
ApoI RAATTY 2 cut(s) 330, 1698
ArsI GACNNNNNNTTYG 2 cut(s) 1457, 1489
AspLEI GCGC 1 cut(s) 1727
AspS9I GGNCC 9 cut(s) 35, 617, 636, 671, 704, 800, 1265, 1496, 1615
AsuHPI GGTGA 6 cut(s) 76, 188, 265, 1190, 1322, 1762
AsuII TTCGAA 1 cut(s) 768
AvaI CYCGRG 1 cut(s) 1255
AvaII GGWCC 7 cut(s) 35, 636, 671, 704, 800, 1265, 1615
AxyI CCTNAGG 1 cut(s) 459
BaeGI GKGCMC 2 cut(s) 1644, 1673
BanI GGYRCC 1 cut(s) 1641
BanII GRGCYC 1 cut(s) 1859
BarI GAAGNNNNNNTAC 2 cut(s) 1134, 1166
BbvI GCAGC 2 cut(s) 39, 922
BccI CCATC 4 cut(s) 352, 597, 647, 1256
BciT130I CCWGG 6 cut(s) 474, 653, 1137, 1167, 1500, 1646
BciVI GTATCC 1 cut(s) 1627
BcoDI GTCTC 5 cut(s) 773, 884, 919, 1034, 1570
BfaI CTAG 2 cut(s) 515, 1832
BfmI CTRYAG 2 cut(s) 1047, 1440
BfoI RGCGCY 1 cut(s) 1728
BfuAI ACCTGC 1 cut(s) 719
BfuI GTATCC 1 cut(s) 1627
BglII AGATCT 1 cut(s) 535
BisI GCNGC 3 cut(s) 28, 341, 936
BlsI GCNGC 3 cut(s) 29, 342, 937
Bme1390I CCNGG 6 cut(s) 474, 653, 1137, 1167, 1500, 1646
Bme18I GGWCC 7 cut(s) 35, 636, 671, 704, 800, 1265, 1615
BmeT110I CYCGRG 1 cut(s) 1255
BmgT120I GGNCC 9 cut(s) 35, 617, 636, 671, 704, 800, 1265, 1496, 1615
BmiI GGNNCC 4 cut(s) 619, 802, 1164, 1643
BmrFI CCNGG 6 cut(s) 474, 653, 1137, 1167, 1500, 1646
BmsI GCATC 2 cut(s) 127, 853
BpmI CTGGAG 1 cut(s) 1158
Bpu14I TTCGAA 1 cut(s) 768
BpuEI CTTGAG 2 cut(s) 72, 1631
BsaI GGTCTC 1 cut(s) 1034
BsaJI CCNNGG 7 cut(s) 31, 242, 276, 598, 946, 1135, 1499
BsaWI WCCGGW 1 cut(s) 1321
Bsc4I CCNNNNNNNGG 4 cut(s) 418, 479, 626, 1262
Bse1I ACTGG 6 cut(s) 171, 307, 387, 706, 1472, 1564
Bse21I CCTNAGG 1 cut(s) 459
Bse3DI GCAATG 3 cut(s) 105, 726, 1584
BseAI TCCGGA 1 cut(s) 1321
BseBI CCWGG 6 cut(s) 474, 653, 1137, 1167, 1500, 1646
BseDI CCNNGG 7 cut(s) 31, 242, 276, 598, 946, 1135, 1499
BseGI GGATG 4 cut(s) 142, 608, 639, 1330
BseLI CCNNNNNNNGG 4 cut(s) 418, 479, 626, 1262
BseMI GCAATG 3 cut(s) 105, 726, 1584
BseMII CTCAG 4 cut(s) 386, 450, 1565, 1617
BseNI ACTGG 6 cut(s) 171, 307, 387, 706, 1472, 1564
BseRI GAGGAG 1 cut(s) 132
BseSI GKGCMC 2 cut(s) 1644, 1673
BseXI GCAGC 2 cut(s) 39, 922
BseYI CCCAGC 1 cut(s) 1158
BsgI GTGCAG 1 cut(s) 995
Bsh1236I CGCG 1 cut(s) 948
BshFI GGCC 4 cut(s) 343, 618, 901, 1498
BshNI GGYRCC 1 cut(s) 1641
BsiHKCI CYCGRG 1 cut(s) 1255
BsiSI CCGG 1 cut(s) 1322
BslFI GGGAC 1 cut(s) 1409
BslI CCNNNNNNNGG 4 cut(s) 418, 479, 626, 1262
BsmAI GTCTC 5 cut(s) 773, 884, 919, 1034, 1570
BsmFI GGGAC 1 cut(s) 1409
BsnI GGCC 4 cut(s) 343, 618, 901, 1498
Bso31I GGTCTC 1 cut(s) 1034
BsoBI CYCGRG 1 cut(s) 1255
Bsp119I TTCGAA 1 cut(s) 768
Bsp1286I GDGCHC 3 cut(s) 1644, 1673, 1859
Bsp13I TCCGGA 1 cut(s) 1321
Bsp143I GATC 7 cut(s) 238, 364, 463, 535, 1052, 1131, 1294
Bsp19I CCATGG 2 cut(s) 242, 598
BspACI CCGC 4 cut(s) 340, 946, 948, 1600
BspANI GGCC 4 cut(s) 343, 618, 901, 1498
BspCNI CTCAG 4 cut(s) 385, 451, 1566, 1616
BspEI TCCGGA 1 cut(s) 1321
BspFNI CGCG 1 cut(s) 948
BspLI GGNNCC 4 cut(s) 619, 802, 1164, 1643
BspMAI CTGCAG 1 cut(s) 1051
BspMI ACCTGC 1 cut(s) 719
BspPI GGATC 4 cut(s) 233, 471, 1060, 1126
BspT104I TTCGAA 1 cut(s) 768
BspT107I GGYRCC 1 cut(s) 1641
BspTNI GGTCTC 1 cut(s) 1034
BsrBI CCGCTC 2 cut(s) 340, 1602
BsrDI GCAATG 3 cut(s) 105, 726, 1584
BsrI ACTGG 6 cut(s) 171, 307, 387, 706, 1472, 1564
BssECI CCNNGG 7 cut(s) 31, 242, 276, 598, 946, 1135, 1499
BssMI GATC 7 cut(s) 238, 364, 463, 535, 1052, 1131, 1294
BssT1I CCWWGG 3 cut(s) 31, 242, 598
Bst2UI CCWGG 6 cut(s) 474, 653, 1137, 1167, 1500, 1646
Bst4CI ACNGT 4 cut(s) 277, 694, 895, 1581
Bst6I CTCTTC 2 cut(s) 765, 882
BstAPI GCANNNNNTGC 1 cut(s) 1046
BstBI TTCGAA 1 cut(s) 768
BstC8I GCNNGC 1 cut(s) 485
BstDEI CTNAG 6 cut(s) 141, 372, 395, 459, 1574, 1603
BstDSI CCRYGG 4 cut(s) 242, 276, 598, 946
BstF5I GGATG 4 cut(s) 142, 608, 639, 1330
BstFNI CGCG 1 cut(s) 948
BstH2I RGCGCY 1 cut(s) 1728
BstHHI GCGC 1 cut(s) 1727
BstKTI GATC 7 cut(s) 241, 367, 466, 538, 1055, 1134, 1297
BstMAI GTCTC 5 cut(s) 773, 884, 919, 1034, 1570
BstMBI GATC 7 cut(s) 238, 364, 463, 535, 1052, 1131, 1294
BstMWI GCNNNNNNNGC 5 cut(s) 321, 1016, 1046, 1722, 1863
BstNI CCWGG 6 cut(s) 474, 653, 1137, 1167, 1500, 1646
BstSCI CCNGG 6 cut(s) 472, 651, 1135, 1165, 1498, 1644
BstSFI CTRYAG 2 cut(s) 1047, 1440
BstSLI GKGCMC 2 cut(s) 1644, 1673
BstUI CGCG 1 cut(s) 948
BstV1I GCAGC 2 cut(s) 39, 922
BstX2I RGATCY 2 cut(s) 463, 535
BstXI CCANNNNNNTGG 2 cut(s) 1275, 1524
BstYI RGATCY 2 cut(s) 463, 535
Bsu36I CCTNAGG 1 cut(s) 459
BsuI GTATCC 1 cut(s) 1627
BsuRI GGCC 4 cut(s) 343, 618, 901, 1498
BtgI CCRYGG 4 cut(s) 242, 276, 598, 946
BtsCI GGATG 4 cut(s) 142, 608, 639, 1330
BtsIMutI CAGTG 3 cut(s) 699, 900, 1404
BveI ACCTGC 1 cut(s) 719
Cac8I GCNNGC 1 cut(s) 485
CaiI CAGNNNCTG 2 cut(s) 880, 959
CfoI GCGC 1 cut(s) 1727
Cfr13I GGNCC 9 cut(s) 35, 617, 636, 671, 704, 800, 1265, 1496, 1615
Cfr42I CCGCGG 1 cut(s) 949
CsiI ACCWGGT 1 cut(s) 1644
Csp6I GTAC 4 cut(s) 289, 497, 1091, 1375
CspCI CAANNNNNGTGG 2 cut(s) 571, 606
CviQI GTAC 4 cut(s) 289, 497, 1091, 1375
DdeI CTNAG 6 cut(s) 141, 372, 395, 459, 1574, 1603
DpnI GATC 7 cut(s) 240, 366, 465, 537, 1054, 1133, 1296
DpnII GATC 7 cut(s) 238, 364, 463, 535, 1052, 1131, 1294
DraIII CACNNNGTG 2 cut(s) 1648, 1805
DrdI GACNNNNNNGTC 1 cut(s) 1613
DseDI GACNNNNNNGTC 1 cut(s) 1613
EaeI YGGCCR 1 cut(s) 341
Eam1104I CTCTTC 2 cut(s) 765, 882
EarI CTCTTC 2 cut(s) 765, 882
Eco130I CCWWGG 3 cut(s) 31, 242, 598
Eco24I GRGCYC 1 cut(s) 1859
Eco31I GGTCTC 1 cut(s) 1034
Eco47I GGWCC 7 cut(s) 35, 636, 671, 704, 800, 1265, 1615
Eco57I CTGAAG 4 cut(s) 1217, 1233, 1575, 1833
Eco81I CCTNAGG 1 cut(s) 459
Eco88I CYCGRG 1 cut(s) 1255
EcoO109I RGGNCCY 2 cut(s) 35, 671
EcoRI GAATTC 1 cut(s) 1698
EcoRII CCWGG 6 cut(s) 472, 651, 1135, 1165, 1498, 1644
EcoT14I CCWWGG 3 cut(s) 31, 242, 598
EcoT38I GRGCYC 1 cut(s) 1859
ErhI CCWWGG 3 cut(s) 31, 242, 598
FaqI GGGAC 1 cut(s) 1409
FauI CCCGC 1 cut(s) 1607
FblI GTMKAC 1 cut(s) 1690
Fnu4HI GCNGC 3 cut(s) 28, 341, 936
FokI GGATG 4 cut(s) 149, 615, 626, 1337
FriOI GRGCYC 1 cut(s) 1859
Fsp4HI GCNGC 3 cut(s) 28, 341, 936
FspBI CTAG 2 cut(s) 515, 1832
GlaI GCGC 1 cut(s) 1726
GluI GCNGC 3 cut(s) 28, 341, 936
GsaI CCCAGC 1 cut(s) 1162
GsuI CTGGAG 1 cut(s) 1158
HaeII RGCGCY 1 cut(s) 1728
HaeIII GGCC 4 cut(s) 343, 618, 901, 1498
HapII CCGG 1 cut(s) 1322
HhaI GCGC 1 cut(s) 1727
Hin6I GCGC 1 cut(s) 1725
HinP1I GCGC 1 cut(s) 1725
HincII GTYRAC 4 cut(s) 553, 1345, 1624, 1691
HindII GTYRAC 4 cut(s) 553, 1345, 1624, 1691
HindIII AAGCTT 3 cut(s) 68, 392, 1864
HinfI GANTC 8 cut(s) 152, 503, 594, 1100, 1237, 1446, 1707, 1796
HpaI GTTAAC 1 cut(s) 1624
HpaII CCGG 1 cut(s) 1322
HphI GGTGA 6 cut(s) 76, 188, 265, 1190, 1322, 1762
Hpy188I TCNGA 8 cut(s) 375, 629, 648, 662, 1213, 1236, 1606, 1852
Hpy188III TCNNGA 7 cut(s) 134, 226, 533, 960, 1123, 1322, 1655
HpyAV CCTTC 8 cut(s) 140, 164, 232, 653, 784, 1196, 1208, 1747
HpyCH4III ACNGT 4 cut(s) 277, 694, 895, 1581
HpyCH4IV ACGT 1 cut(s) 1742
HpyCH4V TGCA 7 cut(s) 719, 866, 938, 976, 1040, 1049, 1844
HpyF10VI GCNNNNNNNGC 5 cut(s) 321, 1016, 1046, 1722, 1863
HpyF3I CTNAG 6 cut(s) 141, 372, 395, 459, 1574, 1603
HpySE526I ACGT 1 cut(s) 1742
HspAI GCGC 1 cut(s) 1725
Kpn2I TCCGGA 1 cut(s) 1321
KspAI GTTAAC 1 cut(s) 1624
KspI CCGCGG 1 cut(s) 949
Kzo9I GATC 7 cut(s) 238, 364, 463, 535, 1052, 1131, 1294
LmnI GCTCC 1 cut(s) 1843
Lsp1109I GCAGC 2 cut(s) 39, 922
LweI GCATC 2 cut(s) 127, 853
MabI ACCWGGT 1 cut(s) 1644
MaeI CTAG 2 cut(s) 515, 1832
MaeII ACGT 1 cut(s) 1742
MaeIII GTNAC 4 cut(s) 43, 918, 1310, 1552
MalI GATC 7 cut(s) 240, 366, 465, 537, 1054, 1133, 1296
MbiI CCGCTC 2 cut(s) 340, 1602
MboI GATC 7 cut(s) 238, 364, 463, 535, 1052, 1131, 1294
MboII GAAGA 5 cut(s) 22, 782, 799, 899, 975
MfeI CAATTG 1 cut(s) 75
MflI RGATCY 2 cut(s) 463, 535
MhlI GDGCHC 3 cut(s) 1644, 1673, 1859
MlyI GAGTC 2 cut(s) 512, 588
MmeI TCCRAC 3 cut(s) 731, 1292, 1541
MroI TCCGGA 1 cut(s) 1321
MseI TTAA 3 cut(s) 390, 819, 1623
MspA1I CMGCKG 2 cut(s) 948, 1573
MspI CCGG 1 cut(s) 1322
MspR9I CCNGG 6 cut(s) 474, 653, 1137, 1167, 1500, 1646
MunI CAATTG 1 cut(s) 75
MvaI CCWGG 6 cut(s) 474, 653, 1137, 1167, 1500, 1646
MvnI CGCG 1 cut(s) 948
MwoI GCNNNNNNNGC 5 cut(s) 321, 1016, 1046, 1722, 1863
NcoI CCATGG 2 cut(s) 242, 598
NdeII GATC 7 cut(s) 238, 364, 463, 535, 1052, 1131, 1294
NlaIV GGNNCC 4 cut(s) 619, 802, 1164, 1643
NmuCI GTSAC 2 cut(s) 918, 1310
NspV TTCGAA 1 cut(s) 768
PfeI GAWTC 6 cut(s) 152, 1100, 1237, 1446, 1707, 1796
PflMI CCANNNNNTGG 1 cut(s) 418
PkrI GCNGC 3 cut(s) 29, 342, 937
PleI GAGTC 2 cut(s) 511, 588
PpsI GAGTC 2 cut(s) 511, 588
PpuMI RGGWCCY 2 cut(s) 35, 671
Psp1406I AACGTT 1 cut(s) 1742
Psp5II RGGWCCY 2 cut(s) 35, 671
Psp6I CCWGG 6 cut(s) 472, 651, 1135, 1165, 1498, 1644
PspFI CCCAGC 1 cut(s) 1158
PspGI CCWGG 6 cut(s) 472, 651, 1135, 1165, 1498, 1644
PspN4I GGNNCC 4 cut(s) 619, 802, 1164, 1643
PspPI GGNCC 9 cut(s) 35, 617, 636, 671, 704, 800, 1265, 1496, 1615
PspPPI RGGWCCY 2 cut(s) 35, 671
PstI CTGCAG 1 cut(s) 1051
PstNI CAGNNNCTG 2 cut(s) 880, 959
PsuI RGATCY 2 cut(s) 463, 535
PvuII CAGCTG 1 cut(s) 1573
RsaI GTAC 4 cut(s) 290, 498, 1092, 1376
RsaNI GTAC 4 cut(s) 289, 497, 1091, 1375
SacII CCGCGG 1 cut(s) 949
SalI GTCGAC 1 cut(s) 1689
SaqAI TTAA 3 cut(s) 390, 819, 1623
SatI GCNGC 3 cut(s) 28, 341, 936
Sau3AI GATC 7 cut(s) 238, 364, 463, 535, 1052, 1131, 1294
Sau96I GGNCC 9 cut(s) 35, 617, 636, 671, 704, 800, 1265, 1496, 1615
SchI GAGTC 2 cut(s) 512, 588
ScrFI CCNGG 6 cut(s) 474, 653, 1137, 1167, 1500, 1646
SduI GDGCHC 3 cut(s) 1644, 1673, 1859
SexAI ACCWGGT 1 cut(s) 1644
SfaNI GCATC 2 cut(s) 127, 853
SfcI CTRYAG 2 cut(s) 1047, 1440
Sfr303I CCGCGG 1 cut(s) 949
SfuI TTCGAA 1 cut(s) 768
SgrBI CCGCGG 1 cut(s) 949
SinI GGWCC 7 cut(s) 35, 636, 671, 704, 800, 1265, 1615
SmlI CTYRAG 2 cut(s) 87, 1610
SmoI CTYRAG 2 cut(s) 87, 1610
SsiI CCGC 4 cut(s) 340, 946, 948, 1600
SspMI CTAG 2 cut(s) 515, 1832
StyD4I CCNGG 6 cut(s) 472, 651, 1135, 1165, 1498, 1644
StyI CCWWGG 3 cut(s) 31, 242, 598
TaaI ACNGT 4 cut(s) 277, 694, 895, 1581
TaiI ACGT 1 cut(s) 1745
TaqI TCGA 6 cut(s) 160, 253, 363, 768, 1297, 1690
TatI WGTACW 1 cut(s) 1374
TauI GCSGC 1 cut(s) 343
TfiI GAWTC 6 cut(s) 152, 1100, 1237, 1446, 1707, 1796
Tru1I TTAA 3 cut(s) 390, 819, 1623
Tru9I TTAA 3 cut(s) 390, 819, 1623
TscAI CASTG 3 cut(s) 706, 900, 1411
TseFI GTSAC 2 cut(s) 918, 1310
TseI GCWGC 2 cut(s) 27, 935
Tsp45I GTSAC 2 cut(s) 918, 1310
TspDTI ATGAA 7 cut(s) 32, 165, 212, 1142, 1162, 1345, 1691
TspRI CASTG 3 cut(s) 706, 900, 1411
Van91I CCANNNNNTGG 1 cut(s) 418
VpaK11BI GGWCC 7 cut(s) 35, 636, 671, 704, 800, 1265, 1615
XapI RAATTY 2 cut(s) 330, 1698
XmiI GTMKAC 1 cut(s) 1690
XspI CTAG 2 cut(s) 515, 1832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.