Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010268

Physical Location & Seq

Genomic Coordinates Reverse (-)

3772606 .. 3776774

Gene Structure 4169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g06560.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGATGCTTTAAGAAAACAAGCCAGTAAGCTCAGGGAGCAGGTGGCAAAGCAGCAGCAGGCTGTGATAAAGCAGTTTGGTGGGACTGGTTATGAAAGCTCAGATGTAATGGTGATAGATGAGGTTGAGATGCAGAGGCATCAACAGCTTGAGAAACTGTATAGGTCTACTCGTGCAGGAAAGGATTTTCAGAAAGAAATTGTAAAAGCAGCAGAAGCATTAACAGCAATAGGATATAAGCATATTGAAGCAGGGACCAAGTTATCTGAGGATTGTAGCAGATATGGTGCTGAAAATGTCCATGATAAAATTTTAGCTAAAGGTGCATCTATATATGGTGATGCTCGTAAGCATGTGGAAAAGGAACAAGAAGACTTGAATAAATTGTTATCTTCACAGGTTTTAGATCCGTTAAGAGCAATGATACTTGGTGCTCCTTTAGAAGATGCTCGCCATCTTGCACAACGTTATAGTCGAATGCGGCAGGAAGCAGAGACACAGGCGGTTGAAGTTTCCAGAAGGCAAGCAAAAGTAAGAGAAATACCAAATCCAGAAAATGTTGGAAAGCTGCATGCAGCAGAAACAAAGATGAAAGAAGTAAAAGCAAATATGGCAGTTTTGGGTATAGAAGCTTCAGCTGCATTGGCTGCTGTGGAAGCACAGCAGCAAAGACTAACTTTTCAGAGGCTTGTTGCACTGGTCGAAGGAGAAAAGAATTATCATCTGAGAGTGGCTGCCATTCTTGGCGAGGTTGAAGCTGAGATGGTCTCAGAGAAACAGCGTAAAGAGTCTGCTCCGCCTGTGATTCCCCAGGAGAGCTTCTCGGAGAAAACAATGTACTTCTTGGCCGAAGCCACTCATTCTTTCACTGCTGCATCGGAGAAGGAACTAAGCTTGTCAGTGGGTGACTATGTTGTTGTGCGAAAGGTGAGCCCATCAGGATGGTCAGAAGGAGAGTGCAAAGGTAAAGGAGGGTGGTTTCCATCAGCATATGTGGAGAAACGTCAACAAATTCCGTCCACTGATCTTTCTTCTTATGTTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SH3_1 SH3_9

Protein Analysis

349

Amino Acids

38.8

Weight (kDa)

7.11

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18060
fragaria_vesca	FvH4_3g06560 FvH4_3g06560 FvH4_3g06560 FvH4_3g33220
malus_domestica	MD05G1292300.v1.1 MD10G1268100.v1.1
prunus_persica	Prupe.4G073100_v2.0.a1
pyrus_communis	pycom05g26860 pycom10g22440
rosa_chinensis	RchiOBHm_Chr5g0012601
rosa_laevigata	RLG00000031928
rosa_multiflora	Rmu_sc0003577.1_g000008
rosa_roxburghii	Rroxscaffold_1G00064070
rosa_rugosa	Rorug05G0002800 Rorug05G0002900
rosa_samantha	Rh5AG096700 Rh5BG093000 Rh5CG105800 Rh5DG092400
rosa_wichuraiana	Rw5G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	31
Acc36I	ACCTGC	1 cut(s)	31
AccI	GTMKAC	1 cut(s)	167
AciI	CCGC	3 cut(s)	481, 503, 797
AclI	AACGTT	1 cut(s)	466
AclWI	GGATC	1 cut(s)	401
AcoI	YGGCCR	1 cut(s)	846
AcsI	RAATTY	2 cut(s)	309, 1011
AcuI	CTGAAG	1 cut(s)	618
AfaI	GTAC	1 cut(s)	839
AgsI	TTSAA	4 cut(s)	248, 379, 509, 755
AjnI	CCWGG	1 cut(s)	810
Alw21I	GWGCWC	1 cut(s)	436
Alw26I	GTCTC	2 cut(s)	488, 772
AlwI	GGATC	1 cut(s)	401
AoxI	GGCC	1 cut(s)	846
ApoI	RAATTY	2 cut(s)	309, 1011
AspS9I	GGNCC	1 cut(s)	255
AsuHPI	GGTGA	4 cut(s)	124, 350, 917, 940
AvaII	GGWCC	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	935
BarI	GAAGNNNNNNTAC	2 cut(s)	616, 648
BauI	CACGAG	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	378
Bbv12I	GWGCWC	1 cut(s)	436
BccI	CCATC	5 cut(s)	462, 757, 936, 943, 991
BciT130I	CCWGG	1 cut(s)	812
BcoDI	GTCTC	2 cut(s)	488, 772
BfuAI	ACCTGC	1 cut(s)	31
Bme1390I	CCNGG	1 cut(s)	812
Bme18I	GGWCC	1 cut(s)	255
BmgT120I	GGNCC	1 cut(s)	255
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	1 cut(s)	812
BmsI	GCATC	6 cut(s)	120, 148, 331, 335, 436, 884
BpiI	GAAGAC	1 cut(s)	378
BplI	GAGNNNNNCTC	4 cut(s)	752, 784, 806, 838
Bpu10I	CCTNAGC	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	170
BsaI	GGTCTC	1 cut(s)	772
BsaJI	CCNNGG	1 cut(s)	810
Bse1I	ACTGG	3 cut(s)	24, 91, 702
Bse3DI	GCAATG	1 cut(s)	426
BseBI	CCWGG	1 cut(s)	812
BseDI	CCNNGG	1 cut(s)	810
BseGI	GGATG	2 cut(s)	10, 947
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	6 cut(s)	46, 114, 258, 716, 750, 783
BseNI	ACTGG	3 cut(s)	24, 91, 702
BsgI	GTGCAG	1 cut(s)	195
BshFI	GGCC	1 cut(s)	848
BsiHKAI	GWGCWC	1 cut(s)	436
BslFI	GGGAC	2 cut(s)	97, 268
BsmAI	GTCTC	2 cut(s)	488, 772
BsmFI	GGGAC	2 cut(s)	97, 268
BsmI	GAATGC	1 cut(s)	483
BsnI	GGCC	1 cut(s)	848
Bso31I	GGTCTC	1 cut(s)	772
Bsp1286I	GDGCHC	2 cut(s)	436, 935
Bsp143I	GATC	2 cut(s)	406, 1024
BspACI	CCGC	3 cut(s)	481, 503, 797
BspANI	GGCC	1 cut(s)	848
BspCNI	CTCAG	6 cut(s)	45, 113, 259, 717, 751, 782
BspLI	GGNNCC	1 cut(s)	256
BspMI	ACCTGC	1 cut(s)	31
BspPI	GGATC	1 cut(s)	401
BspTNI	GGTCTC	1 cut(s)	772
BsrDI	GCAATG	1 cut(s)	426
BsrI	ACTGG	3 cut(s)	24, 91, 702
BssECI	CCNNGG	1 cut(s)	810
BssMI	GATC	2 cut(s)	406, 1024
BssSI	CACGAG	1 cut(s)	171
Bst2BI	CACGAG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	812
Bst4CI	ACNGT	1 cut(s)	159
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstC8I	GCNNGC	4 cut(s)	60, 451, 525, 573
BstDEI	CTNAG	7 cut(s)	32, 100, 267, 725, 759, 769, 890
BstF5I	GGATG	2 cut(s)	10, 947
BstKTI	GATC	2 cut(s)	409, 1027
BstMAI	GTCTC	2 cut(s)	488, 772
BstMBI	GATC	2 cut(s)	406, 1024
BstNI	CCWGG	1 cut(s)	812
BstNSI	RCATGY	2 cut(s)	356, 575
BstSCI	CCNGG	1 cut(s)	810
BstV2I	GAAGAC	1 cut(s)	378
BstX2I	RGATCY	1 cut(s)	406
BstXI	CCANNNNNNTGG	1 cut(s)	942
BstYI	RGATCY	1 cut(s)	406
BsuRI	GGCC	1 cut(s)	848
BtsCI	GGATG	2 cut(s)	10, 947
BtsI	GCAGTG	1 cut(s)	867
BtsIMutI	CAGTG	4 cut(s)	695, 867, 906, 1020
BveI	ACCTGC	1 cut(s)	31
Cac8I	GCNNGC	4 cut(s)	60, 451, 525, 573
Cfr13I	GGNCC	1 cut(s)	255
Csp6I	GTAC	1 cut(s)	838
CviAII	CATG	3 cut(s)	302, 353, 572
CviQI	GTAC	1 cut(s)	838
DdeI	CTNAG	7 cut(s)	32, 100, 267, 725, 759, 769, 890
DpnI	GATC	2 cut(s)	408, 1026
DpnII	GATC	2 cut(s)	406, 1024
EaeI	YGGCCR	1 cut(s)	846
EciI	GGCGGA	1 cut(s)	786
Eco24I	GRGCYC	1 cut(s)	935
Eco31I	GGTCTC	1 cut(s)	772
Eco47I	GGWCC	1 cut(s)	255
Eco57I	CTGAAG	1 cut(s)	618
EcoRII	CCWGG	1 cut(s)	810
EcoT38I	GRGCYC	1 cut(s)	935
FaeI	CATG	3 cut(s)	305, 356, 575
FalI	AAGNNNNNCTT	2 cut(s)	661, 693
FaqI	GGGAC	2 cut(s)	97, 268
FatI	CATG	3 cut(s)	301, 352, 571
FauNDI	CATATG	1 cut(s)	991
FblI	GTMKAC	1 cut(s)	167
FokI	GGATG	2 cut(s)	17, 954
FriOI	GRGCYC	1 cut(s)	935
HaeIII	GGCC	1 cut(s)	848
Hin1II	CATG	3 cut(s)	305, 356, 575
HincII	GTYRAC	1 cut(s)	1007
HindII	GTYRAC	1 cut(s)	1007
HindIII	AAGCTT	2 cut(s)	630, 892
HinfI	GANTC	2 cut(s)	788, 805
HphI	GGTGA	4 cut(s)	124, 350, 917, 940
Hpy166II	GTNNAC	4 cut(s)	168, 1007, 1020, 1042
Hpy188I	TCNGA	9 cut(s)	103, 192, 268, 684, 726, 772, 826, 880, 949
Hpy188III	TCNNGA	3 cut(s)	516, 551, 939
Hpy8I	GTNNAC	4 cut(s)	168, 1007, 1020, 1042
HpyAV	CCTTC	4 cut(s)	513, 698, 877, 944
HpyCH4III	ACNGT	1 cut(s)	159
HpyCH4IV	ACGT	2 cut(s)	466, 1003
HpyF3I	CTNAG	7 cut(s)	32, 100, 267, 725, 759, 769, 890
HpySE526I	ACGT	2 cut(s)	466, 1003
Hsp92II	CATG	3 cut(s)	305, 356, 575
Kzo9I	GATC	2 cut(s)	406, 1024
LmnI	GCTCC	3 cut(s)	37, 439, 799
LweI	GCATC	6 cut(s)	120, 148, 331, 335, 436, 884
MaeII	ACGT	2 cut(s)	466, 1003
MaeIII	GTNAC	1 cut(s)	905
MalI	GATC	2 cut(s)	408, 1026
MboI	GATC	2 cut(s)	406, 1024
MboII	GAAGA	4 cut(s)	383, 384, 455, 1023
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	2 cut(s)	436, 935
MluCI	AATT	5 cut(s)	198, 309, 383, 715, 1011
MlyI	GAGTC	1 cut(s)	797
MmeI	TCCRAC	1 cut(s)	541
MnlI	CCTC	6 cut(s)	115, 129, 262, 678, 742, 965
MseI	TTAA	3 cut(s)	11, 221, 413
MslI	CAYNNNNRTG	1 cut(s)	940
MspA1I	CMGCKG	1 cut(s)	638
MspR9I	CCNGG	1 cut(s)	812
Mva1269I	GAATGC	1 cut(s)	483
MvaI	CCWGG	1 cut(s)	812
NdeI	CATATG	1 cut(s)	991
NdeII	GATC	2 cut(s)	406, 1024
NlaIII	CATG	3 cut(s)	305, 356, 575
NlaIV	GGNNCC	1 cut(s)	256
NmuCI	GTSAC	1 cut(s)	905
NspI	RCATGY	2 cut(s)	356, 575
PaeI	GCATGC	1 cut(s)	575
PaqCI	CACCTGC	1 cut(s)	31
PcsI	WCGNNNNNNNCGW	1 cut(s)	472
PctI	GAATGC	1 cut(s)	483
PfeI	GAWTC	1 cut(s)	805
PleI	GAGTC	1 cut(s)	796
PpsI	GAGTC	1 cut(s)	796
Psp1406I	AACGTT	1 cut(s)	466
Psp6I	CCWGG	1 cut(s)	810
PspGI	CCWGG	1 cut(s)	810
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	255
PsuI	RGATCY	1 cut(s)	406
PvuII	CAGCTG	1 cut(s)	638
RsaI	GTAC	1 cut(s)	839
RsaNI	GTAC	1 cut(s)	838
RseI	CAYNNNNRTG	1 cut(s)	940
SaqAI	TTAA	3 cut(s)	11, 221, 413
Sau3AI	GATC	2 cut(s)	406, 1024
Sau96I	GGNCC	1 cut(s)	255
SchI	GAGTC	1 cut(s)	797
ScrFI	CCNGG	1 cut(s)	812
SduI	GDGCHC	2 cut(s)	436, 935
SfaNI	GCATC	6 cut(s)	120, 148, 331, 335, 436, 884
SinI	GGWCC	1 cut(s)	255
SmiMI	CAYNNNNRTG	1 cut(s)	940
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
SphI	GCATGC	1 cut(s)	575
Sse9I	AATT	5 cut(s)	198, 309, 383, 715, 1011
SsiI	CCGC	3 cut(s)	481, 503, 797
StyD4I	CCNGG	1 cut(s)	810
TaaI	ACNGT	1 cut(s)	159
TaiI	ACGT	2 cut(s)	469, 1006
TaqI	TCGA	2 cut(s)	475, 702
TasI	AATT	5 cut(s)	198, 309, 383, 715, 1011
TatI	WGTACW	1 cut(s)	837
TauI	GCSGC	1 cut(s)	484
TfiI	GAWTC	1 cut(s)	805
Tru1I	TTAA	3 cut(s)	11, 221, 413
Tru9I	TTAA	3 cut(s)	11, 221, 413
TscAI	CASTG	4 cut(s)	702, 874, 906, 1027
TseFI	GTSAC	1 cut(s)	905
Tsp45I	GTSAC	1 cut(s)	905
TspDTI	ATGAA	2 cut(s)	108, 605
TspGWI	ACGGA	2 cut(s)	399, 1005
TspRI	CASTG	4 cut(s)	702, 874, 906, 1027
VpaK11BI	GGWCC	1 cut(s)	255
XapI	RAATTY	2 cut(s)	309, 1011
XceI	RCATGY	2 cut(s)	356, 575
XmiI	GTMKAC	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.