Rh5CG105800

Src homology 3 domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0010268
Physical Location & Seq
Forward (+)
8656726 .. 8660521
3796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG105800.1

Sequence Viewer

Length: 963 bp
ATGGACGCTTTAAGAAAACAAGCCAGTAAGCTCAGGGAGCAGGTCGCAAAGCAGCAACAGGCTGTGATAAAGCAGTTTGGTGGGACTGGTTATGAAAGCTCAGATGTAATGGTGATAGATGAGGTTGAGATGCAGAGGCATCAACAGCTTGAGAAACTGTATAGGTCTACTCGTGCAGGAAAGGATTTTCAGAAAGAAATTGTAAAAGCAGCGGAAGCACTAACAGCCATAGGATATAAGCATATTGAAGCAGGGACCAAGTTGTCTGAGGATTGTAGCAGATATGGTGCTGAAAATGTCCATGATAAAATTTTAGCTAAAGGTGCATCTATATACGGTGATGCTCGTAAGCATGTGGAAAAGGAACAAGAAGACTTGAATAAGTTGTTATCTTCACAGGTTTTAGATCCGTTAAGAGCAATGATACTTGGTGCTCCTTTGGAAGATGCTCGTCATCTTGCTCAACGTTATAGTCGAATGCGGCAGGAAGCAGAGACACAGGCAGTTGAAGTTTCCAGAAGGCTAGCACGAGTTAAAGAAATCCCAAATCCAGAAAATGTTGGAAAGCTGCATGCAGCAGAAACAAAGATGAAAGAAATAAAAGCAAATATGGCAGTTCTGGGTATAGAAGCTTCAGCTGCCTTGGCTGCTGTGGAAGCACAGCAGCAAAGACTAACATTTCAGAGGCTTGTTGCATTGGTTGAAGGAGAAAAGAATTATCATCTGAGAGTGGCTGCCATTCTTGGTGAGGTTGAAGCTGAGATGGTCTCAGAGAAACAGCGTAAAGAGTCTGCTCCTCCTGTGATTCCCCAGGATAGCTTCTCAGAGAAAACAATGTACTTCTTGGCCGAAGCAACTCATTCTTTCACTGCTGCATCGGAGAAGGAACTGAGCTTGTCAGTGGGTGACTACGTTGTTGTGCGAAAGGTATCTCCTCTAGATCACTGTTCAATTGTTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SH3_1 SH3_9

Protein Analysis

320

Amino Acids

35.66

Weight (kDa)

6.54

Isoelectric Point (pI)

40.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010268)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18060
fragaria_vesca FvH4_3g06560 FvH4_3g06560 FvH4_3g06560 FvH4_3g33220
malus_domestica MD05G1292300.v1.1 MD10G1268100.v1.1
prunus_persica Prupe.4G073100_v2.0.a1
pyrus_communis pycom05g26860 pycom10g22440
rosa_chinensis RchiOBHm_Chr5g0012601
rosa_laevigata RLG00000031928
rosa_multiflora Rmu_sc0003577.1_g000008
rosa_roxburghii Rroxscaffold_1G00064070
rosa_rugosa Rorug05G0002800 Rorug05G0002900
rosa_samantha Rh5AG096700 Rh5BG093000 Rh5CG105800 Rh5DG092400
rosa_wichuraiana Rw5G008470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 262
Acc36I ACCTGC 1 cut(s) 31
AccI GTMKAC 1 cut(s) 167
AciI CCGC 2 cut(s) 212, 481
AclI AACGTT 1 cut(s) 466
AclWI GGATC 1 cut(s) 401
AcoI YGGCCR 1 cut(s) 846
AcsI RAATTY 1 cut(s) 309
AcuI CTGAAG 1 cut(s) 618
AfaI GTAC 1 cut(s) 839
AgsI TTSAA 6 cut(s) 248, 379, 509, 704, 755, 951
AjnI CCWGG 1 cut(s) 810
Alw21I GWGCWC 1 cut(s) 436
Alw26I GTCTC 2 cut(s) 488, 772
AlwI GGATC 1 cut(s) 401
AoxI GGCC 1 cut(s) 846
ApeKI GCWGC 9 cut(s) 52, 209, 568, 575, 638, 647, 664, 734, 872
ApoI RAATTY 1 cut(s) 309
AspS9I GGNCC 1 cut(s) 255
AsuHPI GGTGA 4 cut(s) 124, 350, 758, 917
AsuNHI GCTAGC 1 cut(s) 523
AvaII GGWCC 1 cut(s) 255
BarI GAAGNNNNNNTAC 2 cut(s) 616, 648
BauI CACGAG 2 cut(s) 171, 528
BbsI GAAGAC 1 cut(s) 378
Bbv12I GWGCWC 1 cut(s) 436
BbvI GCAGC 9 cut(s) 64, 221, 555, 587, 625, 634, 676, 721, 859
BccI CCATC 1 cut(s) 757
BciT130I CCWGG 1 cut(s) 812
BcoDI GTCTC 2 cut(s) 488, 772
BfaI CTAG 2 cut(s) 524, 938
BfuAI ACCTGC 1 cut(s) 31
Bme1390I CCNGG 1 cut(s) 812
Bme18I GGWCC 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 255
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 812
BmsI GCATC 6 cut(s) 120, 148, 331, 335, 436, 884
BmtI GCTAGC 1 cut(s) 527
BpiI GAAGAC 1 cut(s) 378
BplI GAGNNNNNCTC 2 cut(s) 752, 784
Bpu10I CCTNAGC 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 170
BsaI GGTCTC 1 cut(s) 772
BsaJI CCNNGG 2 cut(s) 642, 810
Bse1I ACTGG 2 cut(s) 24, 91
Bse3DI GCAATG 1 cut(s) 426
BseBI CCWGG 1 cut(s) 812
BseDI CCNNGG 2 cut(s) 642, 810
BseMI GCAATG 1 cut(s) 426
BseMII CTCAG 8 cut(s) 46, 114, 258, 716, 750, 783, 837, 881
BseNI ACTGG 2 cut(s) 24, 91
BseRI GAGGAG 2 cut(s) 786, 924
BseXI GCAGC 9 cut(s) 64, 221, 555, 587, 625, 634, 676, 721, 859
BsgI GTGCAG 1 cut(s) 195
BshFI GGCC 1 cut(s) 848
BsiHKAI GWGCWC 1 cut(s) 436
BslFI GGGAC 2 cut(s) 97, 268
BsmAI GTCTC 2 cut(s) 488, 772
BsmFI GGGAC 2 cut(s) 97, 268
BsmI GAATGC 1 cut(s) 483
BsnI GGCC 1 cut(s) 848
Bso31I GGTCTC 1 cut(s) 772
Bsp1286I GDGCHC 1 cut(s) 436
Bsp143I GATC 2 cut(s) 406, 940
BspACI CCGC 2 cut(s) 212, 481
BspANI GGCC 1 cut(s) 848
BspCNI CTCAG 8 cut(s) 45, 113, 259, 717, 751, 782, 836, 882
BspLI GGNNCC 1 cut(s) 256
BspMI ACCTGC 1 cut(s) 31
BspOI GCTAGC 1 cut(s) 527
BspPI GGATC 1 cut(s) 401
BspTNI GGTCTC 1 cut(s) 772
BsrDI GCAATG 1 cut(s) 426
BsrI ACTGG 2 cut(s) 24, 91
BssECI CCNNGG 2 cut(s) 642, 810
BssMI GATC 2 cut(s) 406, 940
BssSI CACGAG 2 cut(s) 171, 528
BssT1I CCWWGG 1 cut(s) 642
Bst2BI CACGAG 2 cut(s) 171, 528
Bst2UI CCWGG 1 cut(s) 812
Bst4CI ACNGT 3 cut(s) 159, 338, 947
BstC8I GCNNGC 2 cut(s) 525, 573
BstDEI CTNAG 8 cut(s) 32, 100, 267, 725, 759, 769, 823, 890
BstKTI GATC 2 cut(s) 409, 943
BstMAI GTCTC 2 cut(s) 488, 772
BstMBI GATC 2 cut(s) 406, 940
BstNI CCWGG 1 cut(s) 812
BstNSI RCATGY 2 cut(s) 356, 575
BstSCI CCNGG 1 cut(s) 810
BstV1I GCAGC 9 cut(s) 64, 221, 555, 587, 625, 634, 676, 721, 859
BstV2I GAAGAC 1 cut(s) 378
BstX2I RGATCY 1 cut(s) 406
BstYI RGATCY 1 cut(s) 406
BsuRI GGCC 1 cut(s) 848
BtsI GCAGTG 1 cut(s) 867
BtsIMutI CAGTG 3 cut(s) 867, 906, 943
BveI ACCTGC 1 cut(s) 31
Cac8I GCNNGC 2 cut(s) 525, 573
Cfr13I GGNCC 1 cut(s) 255
CseI GACGC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 838
CviAII CATG 3 cut(s) 302, 353, 572
CviQI GTAC 1 cut(s) 838
DdeI CTNAG 8 cut(s) 32, 100, 267, 725, 759, 769, 823, 890
DpnI GATC 2 cut(s) 408, 942
DpnII GATC 2 cut(s) 406, 940
DrdI GACNNNNNNGTC 1 cut(s) 262
DseDI GACNNNNNNGTC 1 cut(s) 262
EaeI YGGCCR 1 cut(s) 846
Eco130I CCWWGG 1 cut(s) 642
Eco31I GGTCTC 1 cut(s) 772
Eco47I GGWCC 1 cut(s) 255
Eco57I CTGAAG 1 cut(s) 618
EcoRII CCWGG 1 cut(s) 810
EcoT14I CCWWGG 1 cut(s) 642
ErhI CCWWGG 1 cut(s) 642
FaeI CATG 3 cut(s) 305, 356, 575
FaqI GGGAC 2 cut(s) 97, 268
FatI CATG 3 cut(s) 301, 352, 571
FblI GTMKAC 1 cut(s) 167
FspBI CTAG 2 cut(s) 524, 938
HaeIII GGCC 1 cut(s) 848
HgaI GACGC 1 cut(s) 14
Hin1II CATG 3 cut(s) 305, 356, 575
HincII GTYRAC 1 cut(s) 958
HindII GTYRAC 1 cut(s) 958
HindIII AAGCTT 1 cut(s) 630
HinfI GANTC 2 cut(s) 788, 805
HphI GGTGA 4 cut(s) 124, 350, 758, 917
Hpy166II GTNNAC 2 cut(s) 168, 958
Hpy188I TCNGA 8 cut(s) 103, 192, 268, 684, 726, 772, 826, 880
Hpy188III TCNNGA 3 cut(s) 516, 551, 938
Hpy8I GTNNAC 2 cut(s) 168, 958
HpyAV CCTTC 3 cut(s) 513, 698, 877
HpyCH4III ACNGT 3 cut(s) 159, 338, 947
HpyCH4IV ACGT 2 cut(s) 466, 912
HpyCH4V TGCA 7 cut(s) 133, 176, 326, 571, 575, 695, 875
HpyF3I CTNAG 8 cut(s) 32, 100, 267, 725, 759, 769, 823, 890
HpySE526I ACGT 2 cut(s) 466, 912
Hsp92II CATG 3 cut(s) 305, 356, 575
Kzo9I GATC 2 cut(s) 406, 940
LmnI GCTCC 3 cut(s) 37, 439, 799
Lsp1109I GCAGC 9 cut(s) 64, 221, 555, 587, 625, 634, 676, 721, 859
LweI GCATC 6 cut(s) 120, 148, 331, 335, 436, 884
MaeI CTAG 2 cut(s) 524, 938
MaeII ACGT 2 cut(s) 466, 912
MaeIII GTNAC 1 cut(s) 905
MalI GATC 2 cut(s) 408, 942
MboI GATC 2 cut(s) 406, 940
MboII GAAGA 3 cut(s) 383, 384, 455
MfeI CAATTG 1 cut(s) 951
MflI RGATCY 1 cut(s) 406
MhlI GDGCHC 1 cut(s) 436
MluCI AATT 4 cut(s) 198, 309, 715, 951
MlyI GAGTC 1 cut(s) 797
MmeI TCCRAC 1 cut(s) 541
MnlI CCTC 7 cut(s) 115, 129, 262, 678, 742, 807, 945
MseI TTAA 3 cut(s) 11, 413, 534
MspA1I CMGCKG 2 cut(s) 212, 638
MspR9I CCNGG 1 cut(s) 812
MunI CAATTG 1 cut(s) 951
Mva1269I GAATGC 1 cut(s) 483
MvaI CCWGG 1 cut(s) 812
NdeII GATC 2 cut(s) 406, 940
NheI GCTAGC 1 cut(s) 523
NlaIII CATG 3 cut(s) 305, 356, 575
NlaIV GGNNCC 1 cut(s) 256
NmuCI GTSAC 1 cut(s) 905
NspI RCATGY 2 cut(s) 356, 575
PaeI GCATGC 1 cut(s) 575
PcsI WCGNNNNNNNCGW 1 cut(s) 472
PctI GAATGC 1 cut(s) 483
PfeI GAWTC 1 cut(s) 805
PleI GAGTC 1 cut(s) 796
PpsI GAGTC 1 cut(s) 796
Psp1406I AACGTT 1 cut(s) 466
Psp6I CCWGG 1 cut(s) 810
PspGI CCWGG 1 cut(s) 810
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 1 cut(s) 255
PsuI RGATCY 1 cut(s) 406
PvuII CAGCTG 1 cut(s) 638
RsaI GTAC 1 cut(s) 839
RsaNI GTAC 1 cut(s) 838
SaqAI TTAA 3 cut(s) 11, 413, 534
Sau3AI GATC 2 cut(s) 406, 940
Sau96I GGNCC 1 cut(s) 255
SchI GAGTC 1 cut(s) 797
ScrFI CCNGG 1 cut(s) 812
SduI GDGCHC 1 cut(s) 436
SfaNI GCATC 6 cut(s) 120, 148, 331, 335, 436, 884
SinI GGWCC 1 cut(s) 255
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
SphI GCATGC 1 cut(s) 575
Sse9I AATT 4 cut(s) 198, 309, 715, 951
SsiI CCGC 2 cut(s) 212, 481
SspMI CTAG 2 cut(s) 524, 938
StyD4I CCNGG 1 cut(s) 810
StyI CCWWGG 1 cut(s) 642
TaaI ACNGT 3 cut(s) 159, 338, 947
TaiI ACGT 2 cut(s) 469, 915
TaqI TCGA 1 cut(s) 475
TasI AATT 4 cut(s) 198, 309, 715, 951
TatI WGTACW 1 cut(s) 837
TauI GCSGC 1 cut(s) 484
TfiI GAWTC 1 cut(s) 805
Tru1I TTAA 3 cut(s) 11, 413, 534
Tru9I TTAA 3 cut(s) 11, 413, 534
TscAI CASTG 3 cut(s) 874, 906, 950
TseFI GTSAC 1 cut(s) 905
TseI GCWGC 9 cut(s) 52, 209, 568, 575, 638, 647, 664, 734, 872
Tsp45I GTSAC 1 cut(s) 905
TspDTI ATGAA 2 cut(s) 108, 605
TspGWI ACGGA 1 cut(s) 399
TspRI CASTG 3 cut(s) 874, 906, 950
VpaK11BI GGWCC 1 cut(s) 255
XapI RAATTY 1 cut(s) 309
XbaI TCTAGA 1 cut(s) 937
XceI RCATGY 2 cut(s) 356, 575
XmiI GTMKAC 1 cut(s) 167
XspI CTAG 2 cut(s) 524, 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.