Prupe.4G073100_v2.0.a1

Src homology 3 domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0010268
Physical Location & Seq
Reverse (-)
3574798 .. 3578604
3807 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G073100.1

Sequence Viewer

Length: 1047 bp
ATGGATGCTTTAAGAAAACAAGCCAGTAAGCTCCGAGAGCAGGTCGCAAAACAGCAACAGGCTGTAATAAAGCAGTTCAGTGGGACTGGTTATGAAAGCTCAGATGTTATGGTAATAGATGAGGTTGAGATGCAGAGACATCAACAGCTAGAGAAACTGTACAGGTCCACTCGTGCAGGAAAGGATTTTCAGAAAGAAGTTGTTAGAGCAGCAGAAGTGTTCACAGCCATAGGGTATAAGCATATTGAAGCAGGAACCAAGTTGTCTGAGGATTGTAGCAGATATGGTGCTGAAAACACAAATGATAAAATTTTAGCTAAGGGTGCATCTATATATGGTGATGCTCGTAAGCATGTGGAAAAGGAACAAGAAGACTTCAATAAGCTGCTATCTTCACAGATTTTAGATCCGTTAAGAGCAATGATAGCTGGTGCTCCTTTGGAAGATGCTCGCCATCTTGCTCAACGTTATAGTCGAATGAGGCAAGAAGCAGAGACACAGGCCGTAGAAGTTTCCAGAAGACAAGCACGAGTAAGAGAACTCCCAAATCCTGAAAATGTTGCAAAGCTGCAGGCAGCGGAAGCAAAGATGAAAGAATTAAAAGCAAACATGGCAGTTCTGGGTATAGAAGCTTCAGCTGCATTGGCTGCTGTGGAAGCACAGCAGCAAAGACTGACTTTCCAGAGGCTTGTTGCACTGGTTGAAGGAGAAAAGACTTACCATCTGAGAGTGGCTGCCATTCTTGGTGAGGTTGAAGCTGAGATGGTTTCAGAGAAACAACGGAAAGAGTCTGCTCCTCCTGTGATTCCACAAGAGAACTCCTCAGAGAAAACAATGTACTTCTTGGCTGAAGCAACACATTCTTTCAGTGCTGCATCAGAGAAGGAACTAAGCTTGTCAGTGGGTGACTATGTTGTTGTACGAAAGGTGAGCCCATCAGGATGGTCAGAAGGAGAGTGCAAAGGTAAAGGAGGATGGTTTCCATCAGCCTATGTGGAGAAGCGCCAGCGGCTTCCAGCCAGCGATCTCAGTGCAGAAGTTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SH3_1 SH3_9

Protein Analysis

349

Amino Acids

38.79

Weight (kDa)

7.04

Isoelectric Point (pI)

45.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010268)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18060
fragaria_vesca FvH4_3g06560 FvH4_3g06560 FvH4_3g06560 FvH4_3g33220
malus_domestica MD05G1292300.v1.1 MD10G1268100.v1.1
prunus_persica Prupe.4G073100_v2.0.a1
pyrus_communis pycom05g26860 pycom10g22440
rosa_chinensis RchiOBHm_Chr5g0012601
rosa_laevigata RLG00000031928
rosa_multiflora Rmu_sc0003577.1_g000008
rosa_roxburghii Rroxscaffold_1G00064070
rosa_rugosa Rorug05G0002800 Rorug05G0002900
rosa_samantha Rh5AG096700 Rh5BG093000 Rh5CG105800 Rh5DG092400
rosa_wichuraiana Rw5G008470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 31
AciI CCGC 2 cut(s) 578, 1009
AclI AACGTT 1 cut(s) 466
AclWI GGATC 1 cut(s) 401
AcsI RAATTY 1 cut(s) 309
AcuI CTGAAG 2 cut(s) 618, 870
AfaI GTAC 3 cut(s) 161, 839, 921
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 4 cut(s) 248, 379, 704, 755
Alw21I GWGCWC 1 cut(s) 436
Alw26I GTCTC 2 cut(s) 130, 488
AlwI GGATC 1 cut(s) 401
AoxI GGCC 1 cut(s) 501
ApeKI GCWGC 9 cut(s) 209, 385, 568, 575, 638, 647, 664, 734, 872
ApoI RAATTY 1 cut(s) 309
AspLEI GCGC 1 cut(s) 1005
AspS9I GGNCC 1 cut(s) 165
AsuHPI GGTGA 4 cut(s) 350, 758, 917, 940
AvaII GGWCC 1 cut(s) 165
BanII GRGCYC 1 cut(s) 935
BarI GAAGNNNNNNTAC 2 cut(s) 616, 648
BauI CACGAG 2 cut(s) 171, 528
BbsI GAAGAC 2 cut(s) 378, 526
Bbv12I GWGCWC 1 cut(s) 436
BbvI GCAGC 9 cut(s) 221, 372, 555, 587, 625, 634, 676, 721, 859
BccI CCATC 7 cut(s) 462, 729, 757, 936, 943, 969, 991
BceAI ACGGC 1 cut(s) 488
BcgI CGANNNNNNTGC 2 cut(s) 1013, 1047
BcoDI GTCTC 2 cut(s) 130, 488
BfaI CTAG 1 cut(s) 149
BfmI CTRYAG 1 cut(s) 569
BfoI RGCGCY 1 cut(s) 1006
BfuAI ACCTGC 1 cut(s) 31
Bme18I GGWCC 1 cut(s) 165
BmgT120I GGNCC 1 cut(s) 165
BmiI GGNNCC 1 cut(s) 256
BmsI GCATC 5 cut(s) 120, 331, 335, 436, 884
BpiI GAAGAC 2 cut(s) 378, 526
BplI GAGNNNNNCTC 2 cut(s) 806, 838
Bpu10I CCTNAGC 1 cut(s) 318
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse1I ACTGG 3 cut(s) 24, 91, 702
Bse3DI GCAATG 1 cut(s) 426
BseGI GGATG 3 cut(s) 10, 947, 980
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMI GCAATG 1 cut(s) 426
BseMII CTCAG 6 cut(s) 114, 258, 716, 750, 837, 1042
BseNI ACTGG 3 cut(s) 24, 91, 702
BseRI GAGGAG 2 cut(s) 786, 811
BseXI GCAGC 9 cut(s) 221, 372, 555, 587, 625, 634, 676, 721, 859
BsgI GTGCAG 1 cut(s) 195
BshFI GGCC 1 cut(s) 503
BsiHKAI GWGCWC 1 cut(s) 436
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 2 cut(s) 130, 488
BsmFI GGGAC 1 cut(s) 97
BsnI GGCC 1 cut(s) 503
Bsp1286I GDGCHC 2 cut(s) 436, 935
Bsp1407I TGTACA 1 cut(s) 159
Bsp143I GATC 2 cut(s) 406, 1024
BspACI CCGC 2 cut(s) 578, 1009
BspANI GGCC 1 cut(s) 503
BspCNI CTCAG 6 cut(s) 113, 259, 717, 751, 836, 1041
BspLI GGNNCC 1 cut(s) 256
BspMAI CTGCAG 1 cut(s) 573
BspMI ACCTGC 1 cut(s) 31
BspPI GGATC 1 cut(s) 401
BsrDI GCAATG 1 cut(s) 426
BsrGI TGTACA 1 cut(s) 159
BsrI ACTGG 3 cut(s) 24, 91, 702
BssMI GATC 2 cut(s) 406, 1024
BssSI CACGAG 2 cut(s) 171, 528
Bst2BI CACGAG 2 cut(s) 171, 528
Bst4CI ACNGT 1 cut(s) 159
BstAPI GCANNNNNTGC 1 cut(s) 647
BstAUI TGTACA 1 cut(s) 159
BstC8I GCNNGC 4 cut(s) 451, 573, 1007, 1021
BstDEI CTNAG 8 cut(s) 100, 267, 318, 725, 759, 823, 890, 1028
BstF5I GGATG 3 cut(s) 10, 947, 980
BstH2I RGCGCY 1 cut(s) 1006
BstHHI GCGC 1 cut(s) 1005
BstKTI GATC 2 cut(s) 409, 1027
BstMAI GTCTC 2 cut(s) 130, 488
BstMBI GATC 2 cut(s) 406, 1024
BstNSI RCATGY 1 cut(s) 356
BstSFI CTRYAG 1 cut(s) 569
BstV1I GCAGC 9 cut(s) 221, 372, 555, 587, 625, 634, 676, 721, 859
BstV2I GAAGAC 2 cut(s) 378, 526
BstX2I RGATCY 1 cut(s) 406
BstXI CCANNNNNNTGG 1 cut(s) 942
BstYI RGATCY 1 cut(s) 406
BsuRI GGCC 1 cut(s) 503
BtsCI GGATG 3 cut(s) 10, 947, 980
BtsIMutI CAGTG 5 cut(s) 85, 695, 874, 906, 1036
BveI ACCTGC 1 cut(s) 31
Cac8I GCNNGC 4 cut(s) 451, 573, 1007, 1021
CfoI GCGC 1 cut(s) 1005
Cfr13I GGNCC 1 cut(s) 165
Csp6I GTAC 3 cut(s) 160, 838, 920
CviAII CATG 2 cut(s) 353, 610
CviQI GTAC 3 cut(s) 160, 838, 920
DdeI CTNAG 8 cut(s) 100, 267, 318, 725, 759, 823, 890, 1028
DpnI GATC 2 cut(s) 408, 1026
DpnII GATC 2 cut(s) 406, 1024
Eco24I GRGCYC 1 cut(s) 935
Eco47I GGWCC 1 cut(s) 165
Eco57I CTGAAG 2 cut(s) 618, 870
EcoT38I GRGCYC 1 cut(s) 935
FaeI CATG 2 cut(s) 356, 613
FalI AAGNNNNNCTT 2 cut(s) 661, 693
FaqI GGGAC 1 cut(s) 97
FatI CATG 2 cut(s) 352, 609
FokI GGATG 3 cut(s) 17, 954, 987
FriOI GRGCYC 1 cut(s) 935
FspBI CTAG 1 cut(s) 149
GlaI GCGC 1 cut(s) 1004
HaeII RGCGCY 1 cut(s) 1006
HaeIII GGCC 1 cut(s) 503
HhaI GCGC 1 cut(s) 1005
Hin1II CATG 2 cut(s) 356, 613
Hin6I GCGC 1 cut(s) 1003
HinP1I GCGC 1 cut(s) 1003
HindIII AAGCTT 2 cut(s) 630, 892
HinfI GANTC 2 cut(s) 788, 805
HphI GGTGA 4 cut(s) 350, 758, 917, 940
Hpy166II GTNNAC 3 cut(s) 168, 222, 1042
Hpy188I TCNGA 9 cut(s) 35, 103, 192, 268, 726, 772, 826, 880, 949
Hpy188III TCNNGA 4 cut(s) 516, 551, 682, 939
Hpy8I GTNNAC 3 cut(s) 168, 222, 1042
HpyAV CCTTC 3 cut(s) 698, 877, 944
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4IV ACGT 1 cut(s) 466
HpyF3I CTNAG 8 cut(s) 100, 267, 318, 725, 759, 823, 890, 1028
HpySE526I ACGT 1 cut(s) 466
Hsp92II CATG 2 cut(s) 356, 613
HspAI GCGC 1 cut(s) 1003
Kzo9I GATC 2 cut(s) 406, 1024
LmnI GCTCC 3 cut(s) 36, 439, 799
Lsp1109I GCAGC 9 cut(s) 221, 372, 555, 587, 625, 634, 676, 721, 859
LweI GCATC 5 cut(s) 120, 331, 335, 436, 884
MaeI CTAG 1 cut(s) 149
MaeII ACGT 1 cut(s) 466
MaeIII GTNAC 1 cut(s) 905
MalI GATC 2 cut(s) 408, 1026
MboI GATC 2 cut(s) 406, 1024
MboII GAAGA 4 cut(s) 383, 384, 455, 531
MflI RGATCY 1 cut(s) 406
MhlI GDGCHC 2 cut(s) 436, 935
MluCI AATT 2 cut(s) 309, 596
MlyI GAGTC 1 cut(s) 797
MnlI CCTC 8 cut(s) 115, 262, 474, 678, 742, 807, 832, 965
MseI TTAA 3 cut(s) 11, 413, 599
MslI CAYNNNNRTG 1 cut(s) 940
MspA1I CMGCKG 3 cut(s) 578, 638, 1009
NdeII GATC 2 cut(s) 406, 1024
NlaIII CATG 2 cut(s) 356, 613
NlaIV GGNNCC 1 cut(s) 256
NmuCI GTSAC 1 cut(s) 905
NspI RCATGY 1 cut(s) 356
PcsI WCGNNNNNNNCGW 1 cut(s) 472
PfeI GAWTC 1 cut(s) 805
PleI GAGTC 1 cut(s) 796
PpsI GAGTC 1 cut(s) 796
Psp1406I AACGTT 1 cut(s) 466
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 1 cut(s) 165
PstI CTGCAG 1 cut(s) 573
PsuI RGATCY 1 cut(s) 406
PvuII CAGCTG 1 cut(s) 638
RsaI GTAC 3 cut(s) 161, 839, 921
RsaNI GTAC 3 cut(s) 160, 838, 920
RseI CAYNNNNRTG 1 cut(s) 940
SaqAI TTAA 3 cut(s) 11, 413, 599
Sau3AI GATC 2 cut(s) 406, 1024
Sau96I GGNCC 1 cut(s) 165
SchI GAGTC 1 cut(s) 797
SduI GDGCHC 2 cut(s) 436, 935
SfaNI GCATC 5 cut(s) 120, 331, 335, 436, 884
SfcI CTRYAG 1 cut(s) 569
SinI GGWCC 1 cut(s) 165
SmiMI CAYNNNNRTG 1 cut(s) 940
Sse9I AATT 2 cut(s) 309, 596
SsiI CCGC 2 cut(s) 578, 1009
SspMI CTAG 1 cut(s) 149
TaaI ACNGT 1 cut(s) 159
TaiI ACGT 1 cut(s) 469
TaqI TCGA 1 cut(s) 475
TasI AATT 2 cut(s) 309, 596
TatI WGTACW 2 cut(s) 159, 837
TauI GCSGC 1 cut(s) 1012
TfiI GAWTC 1 cut(s) 805
Tru1I TTAA 3 cut(s) 11, 413, 599
Tru9I TTAA 3 cut(s) 11, 413, 599
TscAI CASTG 5 cut(s) 85, 702, 874, 906, 1036
TseFI GTSAC 1 cut(s) 905
TseI GCWGC 9 cut(s) 209, 385, 568, 575, 638, 647, 664, 734, 872
Tsp45I GTSAC 1 cut(s) 905
TspDTI ATGAA 2 cut(s) 108, 605
TspGWI ACGGA 2 cut(s) 399, 796
TspRI CASTG 5 cut(s) 85, 702, 874, 906, 1036
VpaK11BI GGWCC 1 cut(s) 165
XapI RAATTY 1 cut(s) 309
XceI RCATGY 1 cut(s) 356
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.