Rh5AG096700

Src homology 3 domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0010268
Physical Location & Seq
Forward (+)
8919242 .. 8923941
4700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG096700.1

Sequence Viewer

Length: 873 bp
ATGGACGCTTTAAGAAAACAAGCCAGTAAGCTCAGGGAGCAGGTCGCAAAGCAGCAACAGGCTGTGATAAAGCAGTTTGGTGGGACTGGTTATGAAAGCTCAGATGTAATGGTGATAGATGAGGTTGAGATGCAGAGGCATCAGCAGCTTGAGAAACTGTATAGGTCTACTCGTGCAGGAAAGGATTTTCAGAAAGAAATTGTAAAAGCAGCGGAAGCACTGACAGCCATAGGATTTAAGCATATTGAAGCAGGGACCAAGTTGTCTGAGGATTGTAGCAGATATGGTGCTGAAAATGTCCATGATAAAATTTTAGCTAAAGGTGCATCTATATACGGTGATGCTCGTAAGCATGTGGAAAAGGAACAAGAAGACTTGAATAAGTTGTTATCTTCACAGGTTTTAGATCCATTAAGAGCAATGATACTTGGTGCTCCTTTGGAAGATGCTCGTCATCTTGCTCAACGTTATAGTCGAATGCGGCAGGAAGCAGAGACACAGGCAGTTGAAGTTTCCAGAAGGCTAGCACGAGTTAAAGAAATCCCAAATCCAGAAAATGTTGGAAAGCTGCATGCAGCAGAAACAAAGATGAAAGAAATAAAAGCAAATATGGCAGTTCTGGGTATAGAAGCTTCGGCTGCCTTGGCTGCTGTGGAAGCACAGCAGCAAAGACTAACATTTCAGAGGCTTGTTGCACTGGTTGAAGGAGAAAAGAATTATCATCTGAGAGTGGCTGCCATTCTTGGTGAGGTTGAAGCTGAGGTTAGTTCCACTCTTGATTATCTTCAGAAGAAAAGTGTTTTCGAACTAAACAATATTAACTTATGCCAAGACCTGAATTTTGTGGCAGATGGTCTCAGAGAAACAGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SH3_1 SH3_9

Protein Analysis

290

Amino Acids

32.38

Weight (kDa)

6.69

Isoelectric Point (pI)

39.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010268)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18060
fragaria_vesca FvH4_3g06560 FvH4_3g06560 FvH4_3g06560 FvH4_3g33220
malus_domestica MD05G1292300.v1.1 MD10G1268100.v1.1
prunus_persica Prupe.4G073100_v2.0.a1
pyrus_communis pycom05g26860 pycom10g22440
rosa_chinensis RchiOBHm_Chr5g0012601
rosa_laevigata RLG00000031928
rosa_multiflora Rmu_sc0003577.1_g000008
rosa_roxburghii Rroxscaffold_1G00064070
rosa_rugosa Rorug05G0002800 Rorug05G0002900
rosa_samantha Rh5AG096700 Rh5BG093000 Rh5CG105800 Rh5DG092400
rosa_wichuraiana Rw5G008470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 262
Acc36I ACCTGC 1 cut(s) 31
AccI GTMKAC 1 cut(s) 167
AciI CCGC 2 cut(s) 212, 481
AclI AACGTT 1 cut(s) 466
AclWI GGATC 1 cut(s) 401
AcsI RAATTY 2 cut(s) 309, 838
AcuI CTGAAG 1 cut(s) 770
AgsI TTSAA 5 cut(s) 248, 379, 509, 704, 755
AluBI AGCT 7 cut(s) 31, 99, 148, 317, 568, 632, 758
AluI AGCT 7 cut(s) 31, 99, 148, 317, 568, 632, 758
Alw21I GWGCWC 1 cut(s) 436
Alw26I GTCTC 2 cut(s) 488, 860
AlwI GGATC 1 cut(s) 401
ApeKI GCWGC 9 cut(s) 52, 145, 209, 568, 575, 638, 647, 664, 734
ApoI RAATTY 2 cut(s) 309, 838
ArsI GACNNNNNNTTYG 2 cut(s) 824, 856
AspS9I GGNCC 1 cut(s) 255
AsuHPI GGTGA 3 cut(s) 124, 350, 758
AsuII TTCGAA 1 cut(s) 804
AsuNHI GCTAGC 1 cut(s) 523
AvaII GGWCC 1 cut(s) 255
BarI GAAGNNNNNNTAC 2 cut(s) 616, 648
BauI CACGAG 2 cut(s) 171, 528
BbsI GAAGAC 1 cut(s) 378
Bbv12I GWGCWC 1 cut(s) 436
BbvCI CCTCAGC 1 cut(s) 759
BbvI GCAGC 9 cut(s) 64, 157, 221, 555, 587, 625, 634, 676, 721
BccI CCATC 1 cut(s) 845
BcoDI GTCTC 2 cut(s) 488, 860
BfaI CTAG 1 cut(s) 524
BfuAI ACCTGC 1 cut(s) 31
Bme18I GGWCC 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 255
BmiI GGNNCC 1 cut(s) 256
BmsI GCATC 5 cut(s) 120, 148, 331, 335, 436
BmtI GCTAGC 1 cut(s) 527
BpiI GAAGAC 1 cut(s) 378
Bpu10I CCTNAGC 2 cut(s) 32, 759
Bpu14I TTCGAA 1 cut(s) 804
BpuEI CTTGAG 1 cut(s) 170
BsaI GGTCTC 1 cut(s) 860
BsaJI CCNNGG 1 cut(s) 642
Bse1I ACTGG 3 cut(s) 24, 91, 702
Bse3DI GCAATG 1 cut(s) 426
BseDI CCNNGG 1 cut(s) 642
BseMI GCAATG 1 cut(s) 426
BseMII CTCAG 6 cut(s) 46, 114, 258, 716, 750, 871
BseNI ACTGG 3 cut(s) 24, 91, 702
BseXI GCAGC 9 cut(s) 64, 157, 221, 555, 587, 625, 634, 676, 721
BsgI GTGCAG 1 cut(s) 195
BsiHKAI GWGCWC 1 cut(s) 436
BslFI GGGAC 2 cut(s) 97, 268
BsmAI GTCTC 2 cut(s) 488, 860
BsmFI GGGAC 2 cut(s) 97, 268
BsmI GAATGC 1 cut(s) 483
Bso31I GGTCTC 1 cut(s) 860
Bsp119I TTCGAA 1 cut(s) 804
Bsp1286I GDGCHC 1 cut(s) 436
Bsp143I GATC 1 cut(s) 406
BspACI CCGC 2 cut(s) 212, 481
BspCNI CTCAG 6 cut(s) 45, 113, 259, 717, 751, 870
BspLI GGNNCC 1 cut(s) 256
BspMI ACCTGC 1 cut(s) 31
BspOI GCTAGC 1 cut(s) 527
BspPI GGATC 1 cut(s) 401
BspT104I TTCGAA 1 cut(s) 804
BspTNI GGTCTC 1 cut(s) 860
BsrDI GCAATG 1 cut(s) 426
BsrI ACTGG 3 cut(s) 24, 91, 702
BssECI CCNNGG 1 cut(s) 642
BssMI GATC 1 cut(s) 406
BssSI CACGAG 2 cut(s) 171, 528
BssT1I CCWWGG 1 cut(s) 642
Bst2BI CACGAG 2 cut(s) 171, 528
Bst4CI ACNGT 2 cut(s) 159, 338
BstBI TTCGAA 1 cut(s) 804
BstC8I GCNNGC 2 cut(s) 525, 573
BstDEI CTNAG 6 cut(s) 32, 100, 267, 725, 759, 857
BstKTI GATC 1 cut(s) 409
BstMAI GTCTC 2 cut(s) 488, 860
BstMBI GATC 1 cut(s) 406
BstNSI RCATGY 2 cut(s) 356, 575
BstV1I GCAGC 9 cut(s) 64, 157, 221, 555, 587, 625, 634, 676, 721
BstV2I GAAGAC 1 cut(s) 378
BstX2I RGATCY 1 cut(s) 406
BstYI RGATCY 1 cut(s) 406
BtsIMutI CAGTG 2 cut(s) 218, 695
BveI ACCTGC 1 cut(s) 31
Cac8I GCNNGC 2 cut(s) 525, 573
Cfr13I GGNCC 1 cut(s) 255
CseI GACGC 1 cut(s) 14
CviAII CATG 3 cut(s) 302, 353, 572
DdeI CTNAG 6 cut(s) 32, 100, 267, 725, 759, 857
DpnI GATC 1 cut(s) 408
DpnII GATC 1 cut(s) 406
DrdI GACNNNNNNGTC 1 cut(s) 262
DseDI GACNNNNNNGTC 1 cut(s) 262
Eco130I CCWWGG 1 cut(s) 642
Eco31I GGTCTC 1 cut(s) 860
Eco47I GGWCC 1 cut(s) 255
Eco57I CTGAAG 1 cut(s) 770
EcoT14I CCWWGG 1 cut(s) 642
ErhI CCWWGG 1 cut(s) 642
FaeI CATG 3 cut(s) 305, 356, 575
FaqI GGGAC 2 cut(s) 97, 268
FatI CATG 3 cut(s) 301, 352, 571
FblI GTMKAC 1 cut(s) 167
FspBI CTAG 1 cut(s) 524
HgaI GACGC 1 cut(s) 14
Hin1II CATG 3 cut(s) 305, 356, 575
HindIII AAGCTT 1 cut(s) 630
HphI GGTGA 3 cut(s) 124, 350, 758
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 7 cut(s) 103, 192, 268, 684, 726, 789, 860
Hpy188III TCNNGA 3 cut(s) 516, 551, 776
Hpy8I GTNNAC 1 cut(s) 168
HpyAV CCTTC 2 cut(s) 513, 698
HpyCH4III ACNGT 2 cut(s) 159, 338
HpyCH4IV ACGT 1 cut(s) 466
HpyCH4V TGCA 6 cut(s) 133, 176, 326, 571, 575, 695
HpyF3I CTNAG 6 cut(s) 32, 100, 267, 725, 759, 857
HpySE526I ACGT 1 cut(s) 466
Hsp92II CATG 3 cut(s) 305, 356, 575
Kzo9I GATC 1 cut(s) 406
LmnI GCTCC 2 cut(s) 37, 439
Lsp1109I GCAGC 9 cut(s) 64, 157, 221, 555, 587, 625, 634, 676, 721
LweI GCATC 5 cut(s) 120, 148, 331, 335, 436
MaeI CTAG 1 cut(s) 524
MaeII ACGT 1 cut(s) 466
MalI GATC 1 cut(s) 408
MboI GATC 1 cut(s) 406
MboII GAAGA 5 cut(s) 383, 384, 455, 776, 802
MflI RGATCY 1 cut(s) 406
MhlI GDGCHC 1 cut(s) 436
MluCI AATT 4 cut(s) 198, 309, 715, 838
MmeI TCCRAC 1 cut(s) 541
MnlI CCTC 6 cut(s) 115, 129, 262, 678, 742, 754
MseI TTAA 5 cut(s) 11, 237, 413, 534, 819
MspA1I CMGCKG 1 cut(s) 212
Mva1269I GAATGC 1 cut(s) 483
NdeII GATC 1 cut(s) 406
NheI GCTAGC 1 cut(s) 523
NlaIII CATG 3 cut(s) 305, 356, 575
NlaIV GGNNCC 1 cut(s) 256
NspI RCATGY 2 cut(s) 356, 575
NspV TTCGAA 1 cut(s) 804
PaeI GCATGC 1 cut(s) 575
PcsI WCGNNNNNNNCGW 1 cut(s) 472
PctI GAATGC 1 cut(s) 483
Psp1406I AACGTT 1 cut(s) 466
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 1 cut(s) 255
PsuI RGATCY 1 cut(s) 406
SaqAI TTAA 5 cut(s) 11, 237, 413, 534, 819
Sau3AI GATC 1 cut(s) 406
Sau96I GGNCC 1 cut(s) 255
SduI GDGCHC 1 cut(s) 436
SfaNI GCATC 5 cut(s) 120, 148, 331, 335, 436
SfuI TTCGAA 1 cut(s) 804
SinI GGWCC 1 cut(s) 255
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
SphI GCATGC 1 cut(s) 575
Sse9I AATT 4 cut(s) 198, 309, 715, 838
SsiI CCGC 2 cut(s) 212, 481
SspI AATATT 1 cut(s) 817
SspMI CTAG 1 cut(s) 524
StyI CCWWGG 1 cut(s) 642
TaaI ACNGT 2 cut(s) 159, 338
TaiI ACGT 1 cut(s) 469
TaqI TCGA 2 cut(s) 475, 804
TasI AATT 4 cut(s) 198, 309, 715, 838
TauI GCSGC 1 cut(s) 484
Tru1I TTAA 5 cut(s) 11, 237, 413, 534, 819
Tru9I TTAA 5 cut(s) 11, 237, 413, 534, 819
TscAI CASTG 2 cut(s) 225, 702
TseI GCWGC 9 cut(s) 52, 145, 209, 568, 575, 638, 647, 664, 734
TspDTI ATGAA 2 cut(s) 108, 605
TspRI CASTG 2 cut(s) 225, 702
VpaK11BI GGWCC 1 cut(s) 255
XapI RAATTY 2 cut(s) 309, 838
XceI RCATGY 2 cut(s) 356, 575
XmiI GTMKAC 1 cut(s) 167
XspI CTAG 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.