FvH4_3g33220

Src homology 3 domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0010268
Physical Location & Seq
Forward (+)
28629411 .. 28633420
4010 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g33220.t2

Sequence Viewer

Length: 1047 bp
ATGGATGCTTTAAGAAAACAAGCTATTAAGCTCAGGGAGCAGGTGGCAAAGCAGCAACAGGCTGTGATAAAGCAGCTTGGGGGGAGTGGTTATGAAAGCTCAGATGTAATGGTGATAGATGAGGTTGAGATGCAGAGGCATCAACAGCTTGAGAAACTGTACAGGTCTACTCGTGCAGGAAAGGATTTTCAGAAAGAAATTGTAAAAGCAGCAGAAGCATTAACAGCAATAGGATATAAACACATTGAAGCAGGGACCAAGTTGTCTGAGGATTGTAGCAGATATGGTGCTGAAAATGTCCATGATAAAATTTTAGCTAAAGGTGCATCTATATATGGTGATGCTCGTAAGCATGTGGAAAAGGAACAAGAAGACTTGAATAAGTTGTTATCTTCACAGGTTTTAGATCCGTTAAGAGCAATGATACTTGGTGCTCCTTTAGAAGATGCTCGCCATCTTGCACAACGTTATAGTCGAATGCGGCAGGAAGCAGAGACACAGGCGGTTGAAGTTTCCAGAAGGCAAGCAAAAGTAAGAGAAATCCCAAATCCAGAAAATGTTGGAAAGCTGCATGCAGCAGAAACAAAGATGAAAGAAATAAAAGCAAATATGGCAGTTCTGGGTATAGAAGCTTCAGCTGCATTGGCTGCTGTGGAAGCACAGCAACAAAGACTAACTTTTCAGAGGCTTGTTGCACTGGTTGAAGGAGAAAAGAATTATCATCTGAGAGTGGCTGCCATTCTTGGCGAGGTTGAAGCTGAGATGGTCTCAGAGAAACAGCGTAAAGAGTCTGCTCCACCTGTGATTCCCCAGGAGAGCTTCTCAGAGAAAACAATGTACTTCTTGGCCGAAGCAACTCATTCTTTCACTGCCGCATCGGAGAAGGAACTAAGCTTGTCAGTGGGTGACTACATTGTTGTGCGAAAGGTGAGCGCATCAGGATGGTCAGAAGGAGAGTGCAAAGGTAAAGGAGGGTGGTTTCCATCAGCATATGTGGAGAAGCGTCAACGGATCCCGACCACTGATCTTTCTTCTGATGTTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SH3_1 SH3_9

Protein Analysis

349

Amino Acids

38.77

Weight (kDa)

7.11

Isoelectric Point (pI)

43.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010268)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18060
fragaria_vesca FvH4_3g06560 FvH4_3g06560 FvH4_3g06560 FvH4_3g33220
malus_domestica MD05G1292300.v1.1 MD10G1268100.v1.1
prunus_persica Prupe.4G073100_v2.0.a1
pyrus_communis pycom05g26860 pycom10g22440
rosa_chinensis RchiOBHm_Chr5g0012601
rosa_laevigata RLG00000031928
rosa_multiflora Rmu_sc0003577.1_g000008
rosa_roxburghii Rroxscaffold_1G00064070
rosa_rugosa Rorug05G0002800 Rorug05G0002900
rosa_samantha Rh5AG096700 Rh5BG093000 Rh5CG105800 Rh5DG092400
rosa_wichuraiana Rw5G008470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 31
AasI GACNNNNNNGTC 1 cut(s) 262
Acc36I ACCTGC 1 cut(s) 31
AccI GTMKAC 1 cut(s) 167
AciI CCGC 3 cut(s) 481, 503, 873
AclI AACGTT 1 cut(s) 466
AclWI GGATC 3 cut(s) 401, 1006, 1019
AcoI YGGCCR 1 cut(s) 846
AcsI RAATTY 1 cut(s) 309
AcuI CTGAAG 1 cut(s) 618
AfaI GTAC 2 cut(s) 161, 839
AgsI TTSAA 5 cut(s) 248, 379, 509, 704, 755
AjnI CCWGG 1 cut(s) 810
Alw21I GWGCWC 1 cut(s) 436
Alw26I GTCTC 2 cut(s) 488, 772
AlwI GGATC 3 cut(s) 401, 1006, 1019
AoxI GGCC 1 cut(s) 846
ApeKI GCWGC 8 cut(s) 52, 73, 209, 568, 575, 638, 647, 734
ApoI RAATTY 1 cut(s) 309
AspLEI GCGC 1 cut(s) 935
AspS9I GGNCC 1 cut(s) 255
AsuHPI GGTGA 4 cut(s) 124, 350, 917, 940
AvaII GGWCC 1 cut(s) 255
BamHI GGATCC 1 cut(s) 1011
BarI GAAGNNNNNNTAC 2 cut(s) 616, 648
BauI CACGAG 1 cut(s) 171
BbsI GAAGAC 1 cut(s) 378
Bbv12I GWGCWC 1 cut(s) 436
BbvI GCAGC 8 cut(s) 64, 85, 221, 555, 587, 625, 634, 721
BccI CCATC 4 cut(s) 462, 757, 936, 991
BciT130I CCWGG 1 cut(s) 812
BcoDI GTCTC 2 cut(s) 488, 772
BfuAI ACCTGC 1 cut(s) 31
Bme1390I CCNGG 1 cut(s) 812
Bme18I GGWCC 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 255
BmiI GGNNCC 2 cut(s) 256, 1013
BmrFI CCNGG 1 cut(s) 812
BmsI GCATC 7 cut(s) 120, 148, 331, 335, 436, 884, 944
BpiI GAAGAC 1 cut(s) 378
BplI GAGNNNNNCTC 4 cut(s) 752, 784, 806, 838
Bpu10I CCTNAGC 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 170
BsaI GGTCTC 1 cut(s) 772
BsaJI CCNNGG 1 cut(s) 810
Bse1I ACTGG 1 cut(s) 702
Bse3DI GCAATG 1 cut(s) 426
BseBI CCWGG 1 cut(s) 812
BseDI CCNNGG 1 cut(s) 810
BseGI GGATG 2 cut(s) 10, 947
BseMI GCAATG 1 cut(s) 426
BseMII CTCAG 7 cut(s) 46, 114, 258, 716, 750, 783, 837
BseNI ACTGG 1 cut(s) 702
BseXI GCAGC 8 cut(s) 64, 85, 221, 555, 587, 625, 634, 721
BsgI GTGCAG 1 cut(s) 195
BshFI GGCC 1 cut(s) 848
BsiHKAI GWGCWC 1 cut(s) 436
BslFI GGGAC 1 cut(s) 268
BsmAI GTCTC 2 cut(s) 488, 772
BsmFI GGGAC 1 cut(s) 268
BsmI GAATGC 1 cut(s) 483
BsnI GGCC 1 cut(s) 848
Bso31I GGTCTC 1 cut(s) 772
Bsp1286I GDGCHC 1 cut(s) 436
Bsp1407I TGTACA 1 cut(s) 159
Bsp143I GATC 3 cut(s) 406, 1011, 1024
BspACI CCGC 3 cut(s) 481, 503, 873
BspANI GGCC 1 cut(s) 848
BspCNI CTCAG 7 cut(s) 45, 113, 259, 717, 751, 782, 836
BspLI GGNNCC 2 cut(s) 256, 1013
BspMI ACCTGC 1 cut(s) 31
BspPI GGATC 3 cut(s) 401, 1006, 1019
BspTNI GGTCTC 1 cut(s) 772
BsrDI GCAATG 1 cut(s) 426
BsrGI TGTACA 1 cut(s) 159
BsrI ACTGG 1 cut(s) 702
BssECI CCNNGG 1 cut(s) 810
BssMI GATC 3 cut(s) 406, 1011, 1024
BssSI CACGAG 1 cut(s) 171
Bst2BI CACGAG 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 812
Bst4CI ACNGT 1 cut(s) 159
BstAPI GCANNNNNTGC 1 cut(s) 647
BstAUI TGTACA 1 cut(s) 159
BstC8I GCNNGC 3 cut(s) 451, 525, 573
BstDEI CTNAG 8 cut(s) 32, 100, 267, 725, 759, 769, 823, 890
BstF5I GGATG 2 cut(s) 10, 947
BstHHI GCGC 1 cut(s) 935
BstKTI GATC 3 cut(s) 409, 1014, 1027
BstMAI GTCTC 2 cut(s) 488, 772
BstMBI GATC 3 cut(s) 406, 1011, 1024
BstNI CCWGG 1 cut(s) 812
BstNSI RCATGY 2 cut(s) 356, 575
BstSCI CCNGG 1 cut(s) 810
BstV1I GCAGC 8 cut(s) 64, 85, 221, 555, 587, 625, 634, 721
BstV2I GAAGAC 1 cut(s) 378
BstX2I RGATCY 2 cut(s) 406, 1011
BstYI RGATCY 2 cut(s) 406, 1011
BsuRI GGCC 1 cut(s) 848
BtsCI GGATG 2 cut(s) 10, 947
BtsI GCAGTG 1 cut(s) 867
BtsIMutI CAGTG 4 cut(s) 695, 867, 906, 1020
BveI ACCTGC 1 cut(s) 31
Cac8I GCNNGC 3 cut(s) 451, 525, 573
CfoI GCGC 1 cut(s) 935
Cfr13I GGNCC 1 cut(s) 255
CseI GACGC 1 cut(s) 992
Csp6I GTAC 2 cut(s) 160, 838
CviAII CATG 3 cut(s) 302, 353, 572
CviQI GTAC 2 cut(s) 160, 838
DdeI CTNAG 8 cut(s) 32, 100, 267, 725, 759, 769, 823, 890
DpnI GATC 3 cut(s) 408, 1013, 1026
DpnII GATC 3 cut(s) 406, 1011, 1024
DrdI GACNNNNNNGTC 1 cut(s) 262
DseDI GACNNNNNNGTC 1 cut(s) 262
EaeI YGGCCR 1 cut(s) 846
Eco31I GGTCTC 1 cut(s) 772
Eco47I GGWCC 1 cut(s) 255
Eco57I CTGAAG 1 cut(s) 618
EcoRII CCWGG 1 cut(s) 810
FaeI CATG 3 cut(s) 305, 356, 575
FalI AAGNNNNNCTT 2 cut(s) 661, 693
FaqI GGGAC 1 cut(s) 268
FatI CATG 3 cut(s) 301, 352, 571
FauNDI CATATG 1 cut(s) 991
FblI GTMKAC 1 cut(s) 167
FokI GGATG 2 cut(s) 17, 954
GlaI GCGC 1 cut(s) 934
HaeIII GGCC 1 cut(s) 848
HgaI GACGC 1 cut(s) 992
HhaI GCGC 1 cut(s) 935
Hin1II CATG 3 cut(s) 305, 356, 575
Hin6I GCGC 1 cut(s) 933
HinP1I GCGC 1 cut(s) 933
HincII GTYRAC 1 cut(s) 1007
HindII GTYRAC 1 cut(s) 1007
HindIII AAGCTT 2 cut(s) 630, 892
HinfI GANTC 2 cut(s) 788, 805
HphI GGTGA 4 cut(s) 124, 350, 917, 940
Hpy166II GTNNAC 3 cut(s) 168, 1007, 1042
Hpy188III TCNNGA 4 cut(s) 516, 551, 939, 1015
Hpy8I GTNNAC 3 cut(s) 168, 1007, 1042
HpyAV CCTTC 4 cut(s) 513, 698, 877, 944
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4IV ACGT 1 cut(s) 466
HpyCH4V TGCA 9 cut(s) 133, 176, 326, 461, 571, 575, 641, 695, 960
HpyF3I CTNAG 8 cut(s) 32, 100, 267, 725, 759, 769, 823, 890
HpySE526I ACGT 1 cut(s) 466
Hsp92II CATG 3 cut(s) 305, 356, 575
HspAI GCGC 1 cut(s) 933
Kzo9I GATC 3 cut(s) 406, 1011, 1024
LmnI GCTCC 3 cut(s) 37, 439, 799
Lsp1109I GCAGC 8 cut(s) 64, 85, 221, 555, 587, 625, 634, 721
LweI GCATC 7 cut(s) 120, 148, 331, 335, 436, 884, 944
MaeII ACGT 1 cut(s) 466
MaeIII GTNAC 1 cut(s) 905
MalI GATC 3 cut(s) 408, 1013, 1026
MboI GATC 3 cut(s) 406, 1011, 1024
MboII GAAGA 4 cut(s) 383, 384, 455, 1023
MflI RGATCY 2 cut(s) 406, 1011
MhlI GDGCHC 1 cut(s) 436
MluCI AATT 3 cut(s) 198, 309, 715
MlyI GAGTC 1 cut(s) 797
MmeI TCCRAC 1 cut(s) 541
MnlI CCTC 6 cut(s) 115, 129, 262, 678, 742, 965
MseI TTAA 4 cut(s) 11, 27, 221, 413
MslI CAYNNNNRTG 2 cut(s) 917, 940
MspA1I CMGCKG 1 cut(s) 638
MspR9I CCNGG 1 cut(s) 812
Mva1269I GAATGC 1 cut(s) 483
MvaI CCWGG 1 cut(s) 812
NdeI CATATG 1 cut(s) 991
NdeII GATC 3 cut(s) 406, 1011, 1024
NlaIII CATG 3 cut(s) 305, 356, 575
NlaIV GGNNCC 2 cut(s) 256, 1013
NmuCI GTSAC 1 cut(s) 905
NspI RCATGY 2 cut(s) 356, 575
PaeI GCATGC 1 cut(s) 575
PaqCI CACCTGC 1 cut(s) 31
PcsI WCGNNNNNNNCGW 1 cut(s) 472
PctI GAATGC 1 cut(s) 483
PfeI GAWTC 1 cut(s) 805
PleI GAGTC 1 cut(s) 796
PpsI GAGTC 1 cut(s) 796
Psp1406I AACGTT 1 cut(s) 466
Psp6I CCWGG 1 cut(s) 810
PspGI CCWGG 1 cut(s) 810
PspN4I GGNNCC 2 cut(s) 256, 1013
PspPI GGNCC 1 cut(s) 255
PsuI RGATCY 2 cut(s) 406, 1011
PvuII CAGCTG 1 cut(s) 638
RsaI GTAC 2 cut(s) 161, 839
RsaNI GTAC 2 cut(s) 160, 838
RseI CAYNNNNRTG 2 cut(s) 917, 940
SaqAI TTAA 4 cut(s) 11, 27, 221, 413
Sau3AI GATC 3 cut(s) 406, 1011, 1024
Sau96I GGNCC 1 cut(s) 255
SchI GAGTC 1 cut(s) 797
ScrFI CCNGG 1 cut(s) 812
SduI GDGCHC 1 cut(s) 436
SfaNI GCATC 7 cut(s) 120, 148, 331, 335, 436, 884, 944
SinI GGWCC 1 cut(s) 255
SmiMI CAYNNNNRTG 2 cut(s) 917, 940
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
SphI GCATGC 1 cut(s) 575
Sse9I AATT 3 cut(s) 198, 309, 715
SsiI CCGC 3 cut(s) 481, 503, 873
StyD4I CCNGG 1 cut(s) 810
TaaI ACNGT 1 cut(s) 159
TaiI ACGT 1 cut(s) 469
TaqI TCGA 1 cut(s) 475
TasI AATT 3 cut(s) 198, 309, 715
TatI WGTACW 2 cut(s) 159, 837
TauI GCSGC 2 cut(s) 484, 875
TfiI GAWTC 1 cut(s) 805
Tru1I TTAA 4 cut(s) 11, 27, 221, 413
Tru9I TTAA 4 cut(s) 11, 27, 221, 413
TscAI CASTG 4 cut(s) 702, 874, 906, 1027
TseFI GTSAC 1 cut(s) 905
TseI GCWGC 8 cut(s) 52, 73, 209, 568, 575, 638, 647, 734
Tsp45I GTSAC 1 cut(s) 905
TspDTI ATGAA 2 cut(s) 108, 605
TspGWI ACGGA 2 cut(s) 399, 1024
TspRI CASTG 4 cut(s) 702, 874, 906, 1027
VpaK11BI GGWCC 1 cut(s) 255
XapI RAATTY 1 cut(s) 309
XceI RCATGY 2 cut(s) 356, 575
XmiI GTMKAC 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.