Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0010268

Physical Location & Seq

Genomic Coordinates Forward (+)

36093578 .. 36097652

Gene Structure 4075 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1268100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGATGCTATAAGAAAGCAAGCTAGTAAGCTCCGAGAGCAGGTCGCCAAGCAGCAGCAGGCTGTGATAAAGCAGTTCGGTGGGACTGGTTATGAAAGCTCAGATGTGATGGTAATAGATGAGGTTGAGATGCAGAGGCATCAGCAGCTAGAGAAACTGTACAGGTCCACTCGCGCAGGAAAGGATTTTCAGAAAGAAGTTGTTAAAGCAGCAGAAGCGTTCACAGTCATAGGTTATAAGCATATTGAAGCAGGAACCAAGTTGTCCGAGGATTGTAGCAGATATGGTGCAGAAAACTCCAGTGACAAGATTTTAGCTAAGGGTGCATCTATATATGGTGATGCTCGTAAGCATGTAGAAAAGGAACAAGAAGATTTGAATAAGCTGTTATCTTCACAGATTTTAGATCCGTTAAGAGCAATGATAGCTGGTGCACCTTTGGAAGATGCTCGTCATCTTGCTCAACGTTATAGTCGAATGAGACAGGAAGCAGAGACACAGGCGGTAGAAGTGTCCAGAAGACAAGCACGAGTAAGAGAACTTCCAAATCCTGATAACGTTGCAAAGCTGCAGGCAGCGGAAGCAAAGATGAAAGAATTGAAAGCAAACATGGCAGTTCTGGGTATAGAAGCTTCAGCTGCATTGGCTGCTGTGGAAGCACAGCAGCAAAGACTAACTTTCCAGAGGCTTGTTGCACTGGTTGAAGGAGAAAAGAATTATCATCTGAGAGTGGCTGCCATACTTGGTGAGGTTGAAGCGGAGTTGGTCTCAGAGAAACAGCGGAAAGAGTCTGCTCCTCCTGTGATTCCACAAGAGAACGGCTCAGAGAAAACAATGTACTTCTTGGCTGAAGCAACACATTCTTTCAGTGCTGCATCAGAGAAGGAGCTAAGCTTGTCAGTCGGTGACTATGTTGTTGTGCGAAAGGTGAGTCCATCAGGATGGTCGGAAGGAGAGTGCAAGGGAAAAGGAGGATGGTTTCCGACAGCCTACGTGGAGAAACGCCAGCGGATTCCATCCAGCGATCTCGGGGGTGAAGATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SH3_1 SH3_9

Protein Analysis

349

Amino Acids

38.61

Weight (kDa)

6.65

Isoelectric Point (pI)

45.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_9	PF14604	285 - 333	6e-09	Variant SH3 domain
SH3_1	PF00018	285 - 329	5.4e-08	SH3 domain
SH3_2	PF07653	286 - 334	2.6e-07	Variant SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18060
fragaria_vesca	FvH4_3g06560 FvH4_3g06560 FvH4_3g06560 FvH4_3g33220
malus_domestica	MD05G1292300.v1.1 MD10G1268100.v1.1
prunus_persica	Prupe.4G073100_v2.0.a1
pyrus_communis	pycom05g26860 pycom10g22440
rosa_chinensis	RchiOBHm_Chr5g0012601
rosa_laevigata	RLG00000031928
rosa_multiflora	Rmu_sc0003577.1_g000008
rosa_roxburghii	Rroxscaffold_1G00064070
rosa_rugosa	Rorug05G0002800 Rorug05G0002900
rosa_samantha	Rh5AG096700 Rh5BG093000 Rh5CG105800 Rh5DG092400
rosa_wichuraiana	Rw5G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	237
Acc36I	ACCTGC	1 cut(s)	31
AccII	CGCG	1 cut(s)	174
AciI	CCGC	5 cut(s)	503, 578, 758, 781, 1009
AclI	AACGTT	2 cut(s)	466, 558
AclWI	GGATC	1 cut(s)	401
AcuI	CTGAAG	2 cut(s)	618, 870
AfaI	GTAC	2 cut(s)	161, 839
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	5 cut(s)	248, 379, 601, 704, 755
Alw21I	GWGCWC	1 cut(s)	436
Alw26I	GTCTC	3 cut(s)	475, 488, 772
Alw44I	GTGCAC	1 cut(s)	432
AlwI	GGATC	1 cut(s)	401
Ama87I	CYCGRG	1 cut(s)	1028
ApaLI	GTGCAC	1 cut(s)	432
ArsI	GACNNNNNNTTYG	2 cut(s)	916, 948
AspLEI	GCGC	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	165
AsuHPI	GGTGA	5 cut(s)	350, 758, 917, 940, 1046
AvaI	CYCGRG	1 cut(s)	1028
AvaII	GGWCC	1 cut(s)	165
BaeGI	GKGCMC	1 cut(s)	436
BarI	GAAGNNNNNNTAC	4 cut(s)	525, 557, 616, 648
BauI	CACGAG	1 cut(s)	528
BbsI	GAAGAC	1 cut(s)	526
Bbv12I	GWGCWC	1 cut(s)	436
BccI	CCATC	5 cut(s)	103, 936, 943, 969, 1024
BceAI	ACGGC	1 cut(s)	835
BcoDI	GTCTC	3 cut(s)	475, 488, 772
BfaI	CTAG	2 cut(s)	24, 149
BfmI	CTRYAG	1 cut(s)	569
BfuAI	ACCTGC	1 cut(s)	31
BlpI	GCTNAGC	1 cut(s)	890
Bme18I	GGWCC	1 cut(s)	165
BmeT110I	CYCGRG	1 cut(s)	1028
BmgT120I	GGNCC	1 cut(s)	165
BmiI	GGNNCC	1 cut(s)	256
BmsI	GCATC	6 cut(s)	120, 148, 331, 335, 436, 884
BpiI	GAAGAC	1 cut(s)	526
BplI	GAGNNNNNCTC	4 cut(s)	752, 784, 806, 838
BpmI	CTGGAG	1 cut(s)	283
Bpu10I	CCTNAGC	1 cut(s)	318
Bpu1102I	GCTNAGC	1 cut(s)	890
BsaAI	YACGTR	1 cut(s)	994
BsaI	GGTCTC	1 cut(s)	772
BsaJI	CCNNGG	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse1I	ACTGG	3 cut(s)	91, 300, 702
Bse3DI	GCAATG	1 cut(s)	426
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	4 cut(s)	10, 947, 980, 1016
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	4 cut(s)	114, 716, 783, 837
BseNI	ACTGG	3 cut(s)	91, 300, 702
BseRI	GAGGAG	1 cut(s)	786
BseSI	GKGCMC	1 cut(s)	436
BsgI	GTGCAG	1 cut(s)	309
Bsh1236I	CGCG	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	436
BsiHKCI	CYCGRG	1 cut(s)	1028
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	3 cut(s)	475, 488, 772
BsmFI	GGGAC	1 cut(s)	97
Bso31I	GGTCTC	1 cut(s)	772
BsoBI	CYCGRG	1 cut(s)	1028
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp1407I	TGTACA	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	406, 1024
Bsp1720I	GCTNAGC	1 cut(s)	890
BspACI	CCGC	5 cut(s)	503, 578, 758, 781, 1009
BspCNI	CTCAG	4 cut(s)	113, 717, 782, 836
BspFNI	CGCG	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	256
BspMAI	CTGCAG	1 cut(s)	573
BspMI	ACCTGC	1 cut(s)	31
BspPI	GGATC	1 cut(s)	401
BspTNI	GGTCTC	1 cut(s)	772
BsrDI	GCAATG	1 cut(s)	426
BsrGI	TGTACA	1 cut(s)	159
BsrI	ACTGG	3 cut(s)	91, 300, 702
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	2 cut(s)	406, 1024
BssSI	CACGAG	1 cut(s)	528
Bst2BI	CACGAG	1 cut(s)	528
Bst4CI	ACNGT	2 cut(s)	159, 226
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstAUI	TGTACA	1 cut(s)	159
BstBAI	YACGTR	1 cut(s)	994
BstC8I	GCNNGC	4 cut(s)	21, 60, 573, 1007
BstDEI	CTNAG	6 cut(s)	100, 318, 725, 769, 823, 890
BstF5I	GGATG	4 cut(s)	10, 947, 980, 1016
BstFNI	CGCG	1 cut(s)	174
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	2 cut(s)	409, 1027
BstMAI	GTCTC	3 cut(s)	475, 488, 772
BstMBI	GATC	2 cut(s)	406, 1024
BstNSI	RCATGY	1 cut(s)	356
BstSFI	CTRYAG	1 cut(s)	569
BstSLI	GKGCMC	1 cut(s)	436
BstUI	CGCG	1 cut(s)	174
BstV2I	GAAGAC	1 cut(s)	526
BstX2I	RGATCY	1 cut(s)	406
BstXI	CCANNNNNNTGG	1 cut(s)	942
BstYI	RGATCY	1 cut(s)	406
BtsCI	GGATG	4 cut(s)	10, 947, 980, 1016
BtsIMutI	CAGTG	3 cut(s)	307, 695, 874
BveI	ACCTGC	1 cut(s)	31
Cac8I	GCNNGC	4 cut(s)	21, 60, 573, 1007
CfoI	GCGC	1 cut(s)	176
Cfr13I	GGNCC	1 cut(s)	165
Csp6I	GTAC	2 cut(s)	160, 838
CviAII	CATG	2 cut(s)	353, 610
CviQI	GTAC	2 cut(s)	160, 838
DdeI	CTNAG	6 cut(s)	100, 318, 725, 769, 823, 890
DpnI	GATC	2 cut(s)	408, 1026
DpnII	GATC	2 cut(s)	406, 1024
Eco31I	GGTCTC	1 cut(s)	772
Eco47I	GGWCC	1 cut(s)	165
Eco57I	CTGAAG	2 cut(s)	618, 870
Eco88I	CYCGRG	1 cut(s)	1028
FaeI	CATG	2 cut(s)	356, 613
FalI	AAGNNNNNCTT	2 cut(s)	661, 693
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	2 cut(s)	352, 609
FokI	GGATG	4 cut(s)	17, 954, 987, 1003
FspBI	CTAG	2 cut(s)	24, 149
GlaI	GCGC	1 cut(s)	175
GsuI	CTGGAG	1 cut(s)	283
HhaI	GCGC	1 cut(s)	176
Hin1II	CATG	2 cut(s)	356, 613
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HindIII	AAGCTT	2 cut(s)	630, 892
HinfI	GANTC	4 cut(s)	788, 805, 931, 1012
HphI	GGTGA	5 cut(s)	350, 758, 917, 940, 1046
Hpy166II	GTNNAC	3 cut(s)	168, 222, 434
Hpy188III	TCNNGA	4 cut(s)	516, 551, 682, 939
Hpy8I	GTNNAC	3 cut(s)	168, 222, 434
HpyAV	CCTTC	3 cut(s)	698, 877, 944
HpyCH4III	ACNGT	2 cut(s)	159, 226
HpyCH4IV	ACGT	3 cut(s)	466, 558, 993
HpyF3I	CTNAG	6 cut(s)	100, 318, 725, 769, 823, 890
HpySE526I	ACGT	3 cut(s)	466, 558, 993
Hsp92II	CATG	2 cut(s)	356, 613
HspAI	GCGC	1 cut(s)	174
Kzo9I	GATC	2 cut(s)	406, 1024
LmnI	GCTCC	3 cut(s)	36, 799, 886
LweI	GCATC	6 cut(s)	120, 148, 331, 335, 436, 884
MaeI	CTAG	2 cut(s)	24, 149
MaeII	ACGT	3 cut(s)	466, 558, 993
MaeIII	GTNAC	2 cut(s)	302, 905
MalI	GATC	2 cut(s)	408, 1026
MboI	GATC	2 cut(s)	406, 1024
MboII	GAAGA	4 cut(s)	383, 384, 455, 531
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	1 cut(s)	436
MluCI	AATT	2 cut(s)	596, 715
MlyI	GAGTC	2 cut(s)	797, 940
MmeI	TCCRAC	2 cut(s)	927, 1007
MnlI	CCTC	7 cut(s)	115, 129, 262, 678, 742, 807, 965
MseI	TTAA	2 cut(s)	204, 413
MslI	CAYNNNNRTG	1 cut(s)	940
MspA1I	CMGCKG	4 cut(s)	578, 638, 781, 1009
MvnI	CGCG	1 cut(s)	174
NdeII	GATC	2 cut(s)	406, 1024
NlaIII	CATG	2 cut(s)	356, 613
NlaIV	GGNNCC	1 cut(s)	256
NmuCI	GTSAC	2 cut(s)	302, 905
NspI	RCATGY	1 cut(s)	356
PcsI	WCGNNNNNNNCGW	1 cut(s)	472
PfeI	GAWTC	2 cut(s)	805, 1012
PleI	GAGTC	2 cut(s)	796, 939
PpsI	GAGTC	2 cut(s)	796, 939
Ppu21I	YACGTR	1 cut(s)	994
PsiI	TTATAA	1 cut(s)	237
Psp1406I	AACGTT	2 cut(s)	466, 558
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	165
PstI	CTGCAG	1 cut(s)	573
PsuI	RGATCY	1 cut(s)	406
PvuII	CAGCTG	1 cut(s)	638
RsaI	GTAC	2 cut(s)	161, 839
RsaNI	GTAC	2 cut(s)	160, 838
RseI	CAYNNNNRTG	1 cut(s)	940
SaqAI	TTAA	2 cut(s)	204, 413
Sau3AI	GATC	2 cut(s)	406, 1024
Sau96I	GGNCC	1 cut(s)	165
SchI	GAGTC	2 cut(s)	797, 940
SduI	GDGCHC	1 cut(s)	436
SfaNI	GCATC	6 cut(s)	120, 148, 331, 335, 436, 884
SfcI	CTRYAG	1 cut(s)	569
SinI	GGWCC	1 cut(s)	165
SmiMI	CAYNNNNRTG	1 cut(s)	940
Sse9I	AATT	2 cut(s)	596, 715
SsiI	CCGC	5 cut(s)	503, 578, 758, 781, 1009
SspMI	CTAG	2 cut(s)	24, 149
TaaI	ACNGT	2 cut(s)	159, 226
TaiI	ACGT	3 cut(s)	469, 561, 996
TaqI	TCGA	1 cut(s)	475
TasI	AATT	2 cut(s)	596, 715
TatI	WGTACW	2 cut(s)	159, 837
TfiI	GAWTC	2 cut(s)	805, 1012
Tru1I	TTAA	2 cut(s)	204, 413
Tru9I	TTAA	2 cut(s)	204, 413
TscAI	CASTG	3 cut(s)	307, 702, 874
TseFI	GTSAC	2 cut(s)	302, 905
Tsp45I	GTSAC	2 cut(s)	302, 905
TspDTI	ATGAA	2 cut(s)	108, 605
TspGWI	ACGGA	1 cut(s)	399
TspRI	CASTG	3 cut(s)	307, 702, 874
VneI	GTGCAC	1 cut(s)	432
VpaK11BI	GGWCC	1 cut(s)	165
XceI	RCATGY	1 cut(s)	356
XspI	CTAG	2 cut(s)	24, 149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.