Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0017619

Physical Location & Seq

Genomic Coordinates Forward (+)

4352885 .. 4353594

Gene Structure 710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g07330.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGAACAACATTTTCCACTCCGTCGGTTCCTTGTTCGGCTCCGGAGAAGATCACATCCCATGGAGCGATGGAAACATCATCCATGGGTGTGAGATAGAAGTTGCAGAGGCGATGAGCAAAGGTGAGACGACAGAGAAGGACAAGAGAGAAAGAATAATTAGGTTATCATGGGCACTTGTTCACTCAAGGCAACATCAAGATGTGCAACGTGGAATAGACATGCTGCTGCAAGCAGCTGAAACTTCAATGGCCAAAAATACCAATTCCCTTTTGGATCAACAAGAGATGCGTTATCTTCGGGCGGTCGGATACTACAGAAGTGGTGCATATTCAACTAGCCGGCGTCTTCTGGACCGGTGCTTAGAGATTGAACCAGAATGGAAACAGGCTCTTCGTCTTAAGAAGACAGTAGAGGATCGAATTGTGAAAGATGGATTCATTGGAATAGGTATTACTGCTGGTGCTGTTATAGCAGCATGTGGGATTGTGGCTGTCTTGGTTACCAGCAAGTGCCGCCGTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006996 GO:0007005 GO:0007031 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016559 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04137 ko04139 map04137 map04139

Pfam Domains

Protein Families

Fis1_TPR_C Fis1_TPR_N

Protein Analysis

175

Amino Acids

19.5

Weight (kDa)

8.37

Isoelectric Point (pI)

46.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fis1_TPR_N	PF14852	54 - 75	2.1e-08	Fis1 N-terminal tetratricopeptide repeat
Fis1_TPR_C	PF14853	95 - 145	3.4e-20	Fis1 C-terminal tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017619)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07330
rosa_chinensis	RchiOBHm_Chr5g0011611
rosa_laevigata	RLG00000031846 RLG00000031848
rosa_multiflora	Rmu_co8315781.1_g000001 Rmu_sc0009001.1_g000013
rosa_roxburghii	Rroxscaffold_1G00064890
rosa_rugosa	Rorug04G0458000
rosa_samantha	Rh5BG085200 Rh5CG099100 Rh5DG085000
rosa_wichuraiana	Rw5G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	41
AciI	CCGC	2 cut(s)	302, 514
AclWI	GGATC	2 cut(s)	282, 423
AcoI	YGGCCR	1 cut(s)	249
AcyI	GRCGYC	1 cut(s)	343
AflII	CTTAAG	1 cut(s)	398
AgeI	ACCGGT	1 cut(s)	354
AgsI	TTSAA	3 cut(s)	246, 333, 371
AluBI	AGCT	1 cut(s)	236
AluI	AGCT	1 cut(s)	236
Alw26I	GTCTC	1 cut(s)	119
AlwI	GGATC	2 cut(s)	282, 423
Aor13HI	TCCGGA	1 cut(s)	41
AoxI	GGCC	1 cut(s)	249
ApeKI	GCWGC	4 cut(s)	223, 226, 233, 473
AsiGI	ACCGGT	1 cut(s)	354
AspS9I	GGNCC	1 cut(s)	352
AsuHPI	GGTGA	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	352
BaeGI	GKGCMC	1 cut(s)	175
BalI	TGGCCA	1 cut(s)	251
BbsI	GAAGAC	2 cut(s)	338, 410
BbvI	GCAGC	4 cut(s)	210, 213, 245, 485
BccI	CCATC	2 cut(s)	62, 425
BceAI	ACGGC	1 cut(s)	501
BciVI	GTATCC	1 cut(s)	302
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	1 cut(s)	336
BfmI	CTRYAG	1 cut(s)	313
BfrI	CTTAAG	1 cut(s)	398
BfuI	GTATCC	1 cut(s)	302
BisI	GCNGC	5 cut(s)	224, 227, 234, 474, 514
BlsI	GCNGC	5 cut(s)	225, 228, 235, 475, 515
Bme18I	GGWCC	1 cut(s)	352
BmgT120I	GGNCC	1 cut(s)	352
BmiI	GGNNCC	2 cut(s)	28, 40
BmsI	GCATC	1 cut(s)	276
BpiI	GAAGAC	2 cut(s)	338, 410
BpuEI	CTTGAG	1 cut(s)	169
BsaHI	GRCGYC	1 cut(s)	343
BsaJI	CCNNGG	2 cut(s)	59, 82
BsaWI	WCCGGW	2 cut(s)	41, 354
Bse118I	RCCGGY	2 cut(s)	339, 354
BseAI	TCCGGA	1 cut(s)	41
BseDI	CCNNGG	2 cut(s)	59, 82
BseGI	GGATG	2 cut(s)	54, 78
BseSI	GKGCMC	1 cut(s)	175
BseXI	GCAGC	4 cut(s)	210, 213, 245, 485
Bsh1285I	CGRYCG	1 cut(s)	306
BshFI	GGCC	1 cut(s)	251
BshTI	ACCGGT	1 cut(s)	354
BsiEI	CGRYCG	1 cut(s)	306
BsiSI	CCGG	3 cut(s)	42, 340, 355
BslFI	GGGAC	1 cut(s)	504
BsmAI	GTCTC	1 cut(s)	119
BsmBI	CGTCTC	1 cut(s)	119
BsmFI	GGGAC	1 cut(s)	504
BsnI	GGCC	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp13I	TCCGGA	1 cut(s)	41
Bsp143I	GATC	3 cut(s)	49, 274, 415
Bsp19I	CCATGG	2 cut(s)	59, 82
BspACI	CCGC	2 cut(s)	302, 514
BspANI	GGCC	1 cut(s)	251
BspEI	TCCGGA	1 cut(s)	41
BspLI	GGNNCC	2 cut(s)	28, 40
BspPI	GGATC	2 cut(s)	282, 423
BspQI	GCTCTTC	1 cut(s)	396
BspTI	CTTAAG	1 cut(s)	398
BsrFI	RCCGGY	2 cut(s)	339, 354
BssAI	RCCGGY	2 cut(s)	339, 354
BssECI	CCNNGG	2 cut(s)	59, 82
BssMI	GATC	3 cut(s)	49, 274, 415
BssNI	GRCGYC	1 cut(s)	343
BssT1I	CCWWGG	2 cut(s)	59, 82
Bst4CI	ACNGT	1 cut(s)	409
Bst6I	CTCTTC	1 cut(s)	396
BstACI	GRCGYC	1 cut(s)	343
BstAFI	CTTAAG	1 cut(s)	398
BstC8I	GCNNGC	2 cut(s)	231, 341
BstDEI	CTNAG	1 cut(s)	361
BstDSI	CCRYGG	2 cut(s)	59, 82
BstEII	GGTNACC	1 cut(s)	499
BstF5I	GGATG	2 cut(s)	54, 78
BstKTI	GATC	3 cut(s)	52, 277, 418
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	3 cut(s)	49, 274, 415
BstMCI	CGRYCG	1 cut(s)	306
BstMWI	GCNNNNNNNGC	2 cut(s)	470, 513
BstNSI	RCATGY	2 cut(s)	223, 480
BstPI	GGTNACC	1 cut(s)	499
BstSFI	CTRYAG	1 cut(s)	313
BstSLI	GKGCMC	1 cut(s)	175
BstV1I	GCAGC	4 cut(s)	210, 213, 245, 485
BstV2I	GAAGAC	2 cut(s)	338, 410
BsuI	GTATCC	1 cut(s)	302
BsuRI	GGCC	1 cut(s)	251
BtgI	CCRYGG	2 cut(s)	59, 82
BtgZI	GCGATG	2 cut(s)	81, 125
BtsCI	GGATG	2 cut(s)	54, 78
Cac8I	GCNNGC	2 cut(s)	231, 341
Cfr10I	RCCGGY	2 cut(s)	339, 354
Cfr13I	GGNCC	1 cut(s)	352
CseI	GACGC	1 cut(s)	332
CspAI	ACCGGT	1 cut(s)	354
CviAII	CATG	5 cut(s)	60, 83, 168, 220, 477
CviJI	RGCY	6 cut(s)	39, 236, 251, 339, 389, 491
CviKI_1	RGCY	6 cut(s)	39, 236, 251, 339, 389, 491
DdeI	CTNAG	1 cut(s)	361
DpnI	GATC	3 cut(s)	51, 276, 417
DpnII	GATC	3 cut(s)	49, 274, 415
EaeI	YGGCCR	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
Eco130I	CCWWGG	2 cut(s)	59, 82
Eco47I	GGWCC	1 cut(s)	352
Eco91I	GGTNACC	1 cut(s)	499
EcoO65I	GGTNACC	1 cut(s)	499
EcoT14I	CCWWGG	2 cut(s)	59, 82
ErhI	CCWWGG	2 cut(s)	59, 82
Esp3I	CGTCTC	1 cut(s)	119
FaeI	CATG	5 cut(s)	63, 86, 171, 223, 480
FaiI	YATR	7 cut(s)	61, 84, 169, 221, 328, 470, 478
FaqI	GGGAC	1 cut(s)	504
FatI	CATG	5 cut(s)	59, 82, 167, 219, 476
Fnu4HI	GCNGC	5 cut(s)	224, 227, 234, 474, 514
FokI	GGATG	2 cut(s)	41, 65
Fsp4HI	GCNGC	5 cut(s)	224, 227, 234, 474, 514
FspBI	CTAG	1 cut(s)	336
GluI	GCNGC	5 cut(s)	224, 227, 234, 474, 514
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	3 cut(s)	42, 340, 355
HgaI	GACGC	1 cut(s)	332
Hin1I	GRCGYC	1 cut(s)	343
Hin1II	CATG	5 cut(s)	63, 86, 171, 223, 480
HinfI	GANTC	1 cut(s)	435
HpaII	CCGG	3 cut(s)	42, 340, 355
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	1 cut(s)	308
Hpy188III	TCNNGA	3 cut(s)	42, 197, 350
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4IV	ACGT	1 cut(s)	208
HpyCH4V	TGCA	4 cut(s)	104, 205, 229, 326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	470, 513
HpyF3I	CTNAG	1 cut(s)	361
HpySE526I	ACGT	1 cut(s)	208
Hsp92I	GRCGYC	1 cut(s)	343
Hsp92II	CATG	5 cut(s)	63, 86, 171, 223, 480
Kpn2I	TCCGGA	1 cut(s)	41
KroI	GCCGGC	1 cut(s)	339
KroNI	GCCGGC	1 cut(s)	341
Kzo9I	GATC	3 cut(s)	49, 274, 415
LguI	GCTCTTC	1 cut(s)	396
LmnI	GCTCC	2 cut(s)	44, 63
LpnPI	CCDG	8 cut(s)	55, 335, 353, 368, 371, 387, 444, 517
Lsp1109I	GCAGC	4 cut(s)	210, 213, 245, 485
LweI	GCATC	1 cut(s)	276
MaeI	CTAG	1 cut(s)	336
MaeII	ACGT	1 cut(s)	208
MaeIII	GTNAC	1 cut(s)	499
MalI	GATC	3 cut(s)	51, 276, 417
MboI	GATC	3 cut(s)	49, 274, 415
MboII	GAAGA	5 cut(s)	59, 287, 338, 383, 415
MhlI	GDGCHC	1 cut(s)	175
MlsI	TGGCCA	1 cut(s)	251
MluCI	AATT	3 cut(s)	156, 262, 420
MluNI	TGGCCA	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	286
MnlI	CCTC	2 cut(s)	100, 406
Mox20I	TGGCCA	1 cut(s)	251
MroI	TCCGGA	1 cut(s)	41
MroNI	GCCGGC	1 cut(s)	339
MscI	TGGCCA	1 cut(s)	251
MseI	TTAA	1 cut(s)	399
MslI	CAYNNNNRTG	2 cut(s)	87, 198
Msp20I	TGGCCA	1 cut(s)	251
MspA1I	CMGCKG	1 cut(s)	236
MspCI	CTTAAG	1 cut(s)	398
MspI	CCGG	3 cut(s)	42, 340, 355
MwoI	GCNNNNNNNGC	2 cut(s)	470, 513
NaeI	GCCGGC	1 cut(s)	341
NcoI	CCATGG	2 cut(s)	59, 82
NdeII	GATC	3 cut(s)	49, 274, 415
NgoMIV	GCCGGC	1 cut(s)	339
NlaIII	CATG	5 cut(s)	63, 86, 171, 223, 480
NlaIV	GGNNCC	2 cut(s)	28, 40
NspI	RCATGY	2 cut(s)	223, 480
PciSI	GCTCTTC	1 cut(s)	396
PdiI	GCCGGC	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	435
PinAI	ACCGGT	1 cut(s)	354
PkrI	GCNGC	5 cut(s)	225, 228, 235, 475, 515
PspEI	GGTNACC	1 cut(s)	499
PspN4I	GGNNCC	2 cut(s)	28, 40
PspPI	GGNCC	1 cut(s)	352
PvuII	CAGCTG	1 cut(s)	236
RseI	CAYNNNNRTG	2 cut(s)	87, 198
SapI	GCTCTTC	1 cut(s)	396
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	5 cut(s)	224, 227, 234, 474, 514
Sau3AI	GATC	3 cut(s)	49, 274, 415
Sau96I	GGNCC	1 cut(s)	352
SduI	GDGCHC	1 cut(s)	175
SetI	ASST	5 cut(s)	124, 164, 211, 238, 451
SfaNI	GCATC	1 cut(s)	276
SfcI	CTRYAG	1 cut(s)	313
SinI	GGWCC	1 cut(s)	352
SmiMI	CAYNNNNRTG	2 cut(s)	87, 198
SmlI	CTYRAG	2 cut(s)	184, 398
SmoI	CTYRAG	2 cut(s)	184, 398
Sse9I	AATT	3 cut(s)	156, 262, 420
SsiI	CCGC	2 cut(s)	302, 514
SspMI	CTAG	1 cut(s)	336
StyI	CCWWGG	2 cut(s)	59, 82
TaaI	ACNGT	1 cut(s)	409
TaiI	ACGT	1 cut(s)	211
TaqI	TCGA	1 cut(s)	418
TasI	AATT	3 cut(s)	156, 262, 420
TauI	GCSGC	1 cut(s)	516
TfiI	GAWTC	1 cut(s)	435
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TseI	GCWGC	4 cut(s)	223, 226, 233, 473
TspDTI	ATGAA	2 cut(s)	17, 427
TspGWI	ACGGA	1 cut(s)	10
Vha464I	CTTAAG	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	352
XceI	RCATGY	2 cut(s)	223, 480
XcmI	CCANNNNNNNNNTGG	1 cut(s)	268
XspI	CTAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.