Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0017619

Physical Location & Seq

Genomic Coordinates Forward (+)

86714668 .. 86715213

Gene Structure 546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00064890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAAAGAGATGATGAACAACATTTTTGACTCCGTCAGTTCCTTGTTTGGCTCCGGAGAAGACCATATACCATGGTGCAATCGAGACGTCATCCATAGGTGTGAGATAGAAGTTAGAGAGGCAATGAACAGAGGTGAGTCAACAGAGGAGCGCAAAAGCAAAAGCATAATAAGGTTATCATGGGCACTTGTGCACTCAATGCAACGTGAAGATGTGCAACGTGGAATTGACATGCTACTACAAGCAACTAATAATTTAATGGCCAAAAGTAGTAACTCCCCTTTGGATCAACGAGATATGCTTTACCTTATGGCTGTTGGATACTACAGAAGTGGTGAATATTCAACTAGCCGGCGTCTTCTGAATCGATGCTTAGGGATTGAACCAAAATGGAGACGGGCTCTGAGTCTAAAGAAGACAGTTGAGGATAGAATTGTGAAAGATGGCTTCATTGGATTAGGAATTACTACTGGTGCTATTATAGCAGCAGGTGGGATTGTAGCTGCATGCCTTGGCTACCAGGCAGCACCACTGTCCCAATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006996 GO:0007005 GO:0007031 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016559 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04137 ko04139 map04137 map04139

Pfam Domains

Protein Families

Fis1_TPR_C Fis1_TPR_N

Protein Analysis

181

Amino Acids

20.32

Weight (kDa)

8.72

Isoelectric Point (pI)

47.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fis1_TPR_N	PF14852	55 - 79	5.2e-08	Fis1 N-terminal tetratricopeptide repeat
Fis1_TPR_C	PF14853	98 - 149	3e-20	Fis1 C-terminal tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017619)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07330
rosa_chinensis	RchiOBHm_Chr5g0011611
rosa_laevigata	RLG00000031846 RLG00000031848
rosa_multiflora	Rmu_co8315781.1_g000001 Rmu_sc0009001.1_g000013
rosa_roxburghii	Rroxscaffold_1G00064890
rosa_rugosa	Rorug04G0458000
rosa_samantha	Rh5BG085200 Rh5CG099100 Rh5DG085000
rosa_wichuraiana	Rw5G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	479
AatII	GACGTC	1 cut(s)	90
Acc36I	ACCTGC	1 cut(s)	479
AccIII	TCCGGA	1 cut(s)	53
AclWI	GGATC	1 cut(s)	294
AcoI	YGGCCR	1 cut(s)	261
AcyI	GRCGYC	2 cut(s)	87, 355
AgsI	TTSAA	2 cut(s)	345, 383
AjnI	CCWGG	1 cut(s)	519
AluBI	AGCT	1 cut(s)	503
AluI	AGCT	1 cut(s)	503
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	2 cut(s)	78, 388
Alw44I	GTGCAC	1 cut(s)	191
AlwI	GGATC	1 cut(s)	294
Aor13HI	TCCGGA	1 cut(s)	53
AoxI	GGCC	1 cut(s)	261
ApaLI	GTGCAC	1 cut(s)	191
ApeKI	GCWGC	3 cut(s)	485, 503, 524
AspLEI	GCGC	1 cut(s)	153
AsuHPI	GGTGA	2 cut(s)	146, 347
BaeGI	GKGCMC	2 cut(s)	187, 195
BalI	TGGCCA	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	403
BarI	GAAGNNNNNNTAC	2 cut(s)	51, 83
BbsI	GAAGAC	3 cut(s)	66, 350, 422
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	3 cut(s)	490, 497, 536
BccI	CCATC	1 cut(s)	437
BciT130I	CCWGG	1 cut(s)	521
BciVI	GTATCC	1 cut(s)	314
BcoDI	GTCTC	2 cut(s)	78, 388
BfaI	CTAG	1 cut(s)	348
BfmI	CTRYAG	1 cut(s)	325
BfuAI	ACCTGC	1 cut(s)	479
BfuI	GTATCC	1 cut(s)	314
BisI	GCNGC	3 cut(s)	486, 504, 525
BlsI	GCNGC	3 cut(s)	487, 505, 526
Bme1390I	CCNGG	1 cut(s)	521
BmiI	GGNNCC	1 cut(s)	52
BmrFI	CCNGG	1 cut(s)	521
BmsI	GCATC	1 cut(s)	359
BpiI	GAAGAC	3 cut(s)	66, 350, 422
BplI	GAGNNNNNCTC	2 cut(s)	385, 417
Bpu10I	CCTNAGC	1 cut(s)	373
Bsa29I	ATCGAT	1 cut(s)	367
BsaHI	GRCGYC	2 cut(s)	87, 355
BsaJI	CCNNGG	2 cut(s)	71, 511
BsaWI	WCCGGW	1 cut(s)	53
Bse118I	RCCGGY	1 cut(s)	351
Bse1I	ACTGG	1 cut(s)	475
Bse3DI	GCAATG	1 cut(s)	129
BseAI	TCCGGA	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	521
BseCI	ATCGAT	1 cut(s)	367
BseDI	CCNNGG	2 cut(s)	71, 511
BseGI	GGATG	1 cut(s)	90
BseMI	GCAATG	1 cut(s)	129
BseMII	CTCAG	1 cut(s)	395
BseNI	ACTGG	1 cut(s)	475
BseRI	GAGGAG	1 cut(s)	161
BseSI	GKGCMC	2 cut(s)	187, 195
BseXI	GCAGC	3 cut(s)	490, 497, 536
BshFI	GGCC	1 cut(s)	263
BshVI	ATCGAT	1 cut(s)	367
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	2 cut(s)	54, 352
BslFI	GGGAC	1 cut(s)	520
BsmAI	GTCTC	2 cut(s)	78, 388
BsmBI	CGTCTC	2 cut(s)	78, 388
BsmFI	GGGAC	1 cut(s)	520
BsnI	GGCC	1 cut(s)	263
Bsp1286I	GDGCHC	3 cut(s)	187, 195, 403
Bsp13I	TCCGGA	1 cut(s)	53
Bsp143I	GATC	1 cut(s)	286
Bsp19I	CCATGG	1 cut(s)	71
BspANI	GGCC	1 cut(s)	263
BspCNI	CTCAG	1 cut(s)	396
BspDI	ATCGAT	1 cut(s)	367
BspEI	TCCGGA	1 cut(s)	53
BspLI	GGNNCC	1 cut(s)	52
BspMI	ACCTGC	1 cut(s)	479
BspPI	GGATC	1 cut(s)	294
BsrDI	GCAATG	1 cut(s)	129
BsrFI	RCCGGY	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	475
BssAI	RCCGGY	1 cut(s)	351
BssECI	CCNNGG	2 cut(s)	71, 511
BssMI	GATC	1 cut(s)	286
BssNI	GRCGYC	2 cut(s)	87, 355
BssT1I	CCWWGG	2 cut(s)	71, 511
Bst2UI	CCWGG	1 cut(s)	521
Bst4CI	ACNGT	2 cut(s)	421, 534
BstACI	GRCGYC	2 cut(s)	87, 355
BstAPI	GCANNNNNTGC	1 cut(s)	199
BstC8I	GCNNGC	2 cut(s)	353, 508
BstDEI	CTNAG	2 cut(s)	373, 404
BstDSI	CCRYGG	1 cut(s)	71
BstF5I	GGATG	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	153
BstKTI	GATC	1 cut(s)	289
BstMAI	GTCTC	2 cut(s)	78, 388
BstMBI	GATC	1 cut(s)	286
BstMWI	GCNNNNNNNGC	2 cut(s)	199, 482
BstNI	CCWGG	1 cut(s)	521
BstNSI	RCATGY	2 cut(s)	235, 510
BstSCI	CCNGG	1 cut(s)	519
BstSFI	CTRYAG	1 cut(s)	325
BstSLI	GKGCMC	2 cut(s)	187, 195
BstV1I	GCAGC	3 cut(s)	490, 497, 536
BstV2I	GAAGAC	3 cut(s)	66, 350, 422
Bsu15I	ATCGAT	1 cut(s)	367
BsuI	GTATCC	1 cut(s)	314
BsuRI	GGCC	1 cut(s)	263
BsuTUI	ATCGAT	1 cut(s)	367
BtgI	CCRYGG	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	530
BveI	ACCTGC	1 cut(s)	479
Cac8I	GCNNGC	2 cut(s)	353, 508
CfoI	GCGC	1 cut(s)	153
Cfr10I	RCCGGY	1 cut(s)	351
ClaI	ATCGAT	1 cut(s)	367
CseI	GACGC	1 cut(s)	344
CviAII	CATG	4 cut(s)	72, 180, 232, 507
CviJI	RGCY	8 cut(s)	51, 263, 314, 351, 401, 447, 503, 516
CviKI_1	RGCY	8 cut(s)	51, 263, 314, 351, 401, 447, 503, 516
DdeI	CTNAG	2 cut(s)	373, 404
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
EaeI	YGGCCR	1 cut(s)	261
Eco130I	CCWWGG	2 cut(s)	71, 511
Eco24I	GRGCYC	1 cut(s)	403
EcoRII	CCWGG	1 cut(s)	519
EcoT14I	CCWWGG	2 cut(s)	71, 511
EcoT38I	GRGCYC	1 cut(s)	403
ErhI	CCWWGG	2 cut(s)	71, 511
Esp3I	CGTCTC	2 cut(s)	78, 388
FaeI	CATG	4 cut(s)	75, 183, 235, 510
FaqI	GGGAC	1 cut(s)	520
FatI	CATG	4 cut(s)	71, 179, 231, 506
Fnu4HI	GCNGC	3 cut(s)	486, 504, 525
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	403
Fsp4HI	GCNGC	3 cut(s)	486, 504, 525
FspBI	CTAG	1 cut(s)	348
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	3 cut(s)	486, 504, 525
HaeIII	GGCC	1 cut(s)	263
HapII	CCGG	2 cut(s)	54, 352
HgaI	GACGC	1 cut(s)	344
HhaI	GCGC	1 cut(s)	153
Hin1I	GRCGYC	2 cut(s)	87, 355
Hin1II	CATG	4 cut(s)	75, 183, 235, 510
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HinfI	GANTC	4 cut(s)	29, 137, 364, 406
HpaII	CCGG	2 cut(s)	54, 352
HphI	GGTGA	2 cut(s)	146, 347
Hpy166II	GTNNAC	2 cut(s)	141, 193
Hpy188I	TCNGA	2 cut(s)	363, 405
Hpy188III	TCNNGA	2 cut(s)	54, 83
Hpy8I	GTNNAC	2 cut(s)	141, 193
HpyCH4III	ACNGT	2 cut(s)	421, 534
HpyCH4IV	ACGT	3 cut(s)	87, 205, 220
HpyCH4V	TGCA	5 cut(s)	78, 193, 202, 217, 506
HpyF10VI	GCNNNNNNNGC	2 cut(s)	199, 482
HpyF3I	CTNAG	2 cut(s)	373, 404
HpySE526I	ACGT	3 cut(s)	87, 205, 220
Hsp92I	GRCGYC	2 cut(s)	87, 355
Hsp92II	CATG	4 cut(s)	75, 183, 235, 510
HspAI	GCGC	1 cut(s)	151
Kpn2I	TCCGGA	1 cut(s)	53
KroI	GCCGGC	1 cut(s)	351
KroNI	GCCGGC	1 cut(s)	353
Kzo9I	GATC	1 cut(s)	286
LmnI	GCTCC	2 cut(s)	56, 148
LpnPI	CCDG	6 cut(s)	67, 365, 456, 474, 506, 533
Lsp1109I	GCAGC	3 cut(s)	490, 497, 536
LweI	GCATC	1 cut(s)	359
MaeI	CTAG	1 cut(s)	348
MaeII	ACGT	3 cut(s)	87, 205, 220
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	4 cut(s)	71, 221, 350, 427
MhlI	GDGCHC	3 cut(s)	187, 195, 403
MlsI	TGGCCA	1 cut(s)	263
MluCI	AATT	4 cut(s)	225, 253, 432, 462
MluNI	TGGCCA	1 cut(s)	263
MlyI	GAGTC	3 cut(s)	23, 146, 415
MmeI	TCCRAC	1 cut(s)	298
MnlI	CCTC	4 cut(s)	112, 125, 139, 418
Mox20I	TGGCCA	1 cut(s)	263
MroI	TCCGGA	1 cut(s)	53
MroNI	GCCGGC	1 cut(s)	351
MscI	TGGCCA	1 cut(s)	263
MseI	TTAA	1 cut(s)	257
MslI	CAYNNNNRTG	1 cut(s)	99
Msp20I	TGGCCA	1 cut(s)	263
MspI	CCGG	2 cut(s)	54, 352
MspR9I	CCNGG	1 cut(s)	521
MvaI	CCWGG	1 cut(s)	521
MwoI	GCNNNNNNNGC	2 cut(s)	199, 482
NaeI	GCCGGC	1 cut(s)	353
NcoI	CCATGG	1 cut(s)	71
NdeII	GATC	1 cut(s)	286
NgoMIV	GCCGGC	1 cut(s)	351
NlaIII	CATG	4 cut(s)	75, 183, 235, 510
NlaIV	GGNNCC	1 cut(s)	52
NspI	RCATGY	2 cut(s)	235, 510
PaeI	GCATGC	1 cut(s)	510
PaqCI	CACCTGC	1 cut(s)	479
PdiI	GCCGGC	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	364
PflFI	GACNNNGTC	1 cut(s)	32
PkrI	GCNGC	3 cut(s)	487, 505, 526
PleI	GAGTC	3 cut(s)	23, 145, 414
PpsI	GAGTC	3 cut(s)	23, 145, 414
Psp6I	CCWGG	1 cut(s)	519
PspGI	CCWGG	1 cut(s)	519
PspN4I	GGNNCC	1 cut(s)	52
PsyI	GACNNNGTC	1 cut(s)	32
RseI	CAYNNNNRTG	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	257
SatI	GCNGC	3 cut(s)	486, 504, 525
Sau3AI	GATC	1 cut(s)	286
SchI	GAGTC	3 cut(s)	23, 146, 415
ScrFI	CCNGG	1 cut(s)	521
SduI	GDGCHC	3 cut(s)	187, 195, 403
SetI	ASST	9 cut(s)	90, 101, 136, 176, 208, 223, 309, 493, 505
SfaNI	GCATC	1 cut(s)	359
SfcI	CTRYAG	1 cut(s)	325
SmiMI	CAYNNNNRTG	1 cut(s)	99
SphI	GCATGC	1 cut(s)	510
Sse9I	AATT	4 cut(s)	225, 253, 432, 462
SspI	AATATT	1 cut(s)	341
SspMI	CTAG	1 cut(s)	348
StyD4I	CCNGG	1 cut(s)	519
StyI	CCWWGG	2 cut(s)	71, 511
TaaI	ACNGT	2 cut(s)	421, 534
TaiI	ACGT	3 cut(s)	90, 208, 223
TaqI	TCGA	2 cut(s)	82, 367
TasI	AATT	4 cut(s)	225, 253, 432, 462
TfiI	GAWTC	1 cut(s)	364
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TscAI	CASTG	1 cut(s)	537
TseI	GCWGC	3 cut(s)	485, 503, 524
TspDTI	ATGAA	4 cut(s)	17, 29, 140, 439
TspGWI	ACGGA	1 cut(s)	22
TspRI	CASTG	1 cut(s)	537
Tth111I	GACNNNGTC	1 cut(s)	32
VneI	GTGCAC	1 cut(s)	191
XceI	RCATGY	2 cut(s)	235, 510
XspI	CTAG	1 cut(s)	348
ZraI	GACGTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.