Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0017619

Physical Location & Seq

Genomic Coordinates Reverse (-)

7857675 .. 7858415

Gene Structure 741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG099100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAAAGAAATGATCATGAACAACATTTTTGACTCCGTCAGTTCCTTGTTTGGCTCCGGAGAAGACCATATACCGTGGTGCAATCGAGACATCATCCATAGGTGTGAAATAGAAGTTGGAGAGGCAATGAACAAAGGTGAGTCGACAGAGGAGCACAAGAGCAAAAGCATAATGAGGTTATCATGGGCACTTGTTCACTCAATGCAACGTGAAGATGTGCATCGTGGAATTGACATGCTACTACAAGCAACTAATAATTCAATGGCCAAAAGTACTAACTCCCCTTTGGATCAACGAGAGATGCTTTACCTTATGGCCGTTGGATACTACAGAAGTGGTGAATATTCAACTAGCCGGCGTCTTCTGAATCGGTGCTTAGGGATTGAACCAAAATGGAGACGGGCTCTGAGTCTGAAGAAGACAGTTGAGGATCGAATTGTGAAAGATGGCTTCATTGGAATAGGAATTACTGCTGGTGCTATTATAGCAGCAGGTGGGATTGTAGCTGCATGCCTTGGCTACCAGGCAGCGCCACTGTCCCAATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006996 GO:0007005 GO:0007031 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016559 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04137 ko04139 map04137 map04139

Pfam Domains

Protein Families

Fis1_TPR_C Fis1_TPR_N

Protein Analysis

182

Amino Acids

20.3

Weight (kDa)

7.71

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fis1_TPR_N	PF14852	56 - 80	1.9e-07	Fis1 N-terminal tetratricopeptide repeat
Fis1_TPR_C	PF14853	99 - 150	2.5e-20	Fis1 C-terminal tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017619)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07330
rosa_chinensis	RchiOBHm_Chr5g0011611
rosa_laevigata	RLG00000031846 RLG00000031848
rosa_multiflora	Rmu_co8315781.1_g000001 Rmu_sc0009001.1_g000013
rosa_roxburghii	Rroxscaffold_1G00064890
rosa_rugosa	Rorug04G0458000
rosa_samantha	Rh5BG085200 Rh5CG099100 Rh5DG085000
rosa_wichuraiana	Rw5G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	482
Acc36I	ACCTGC	1 cut(s)	482
AccI	GTMKAC	1 cut(s)	143
AccIII	TCCGGA	1 cut(s)	56
AclWI	GGATC	2 cut(s)	297, 438
AcoI	YGGCCR	2 cut(s)	264, 315
AcuI	CTGAAG	1 cut(s)	434
AcyI	GRCGYC	1 cut(s)	358
AfaI	GTAC	1 cut(s)	274
AgsI	TTSAA	3 cut(s)	261, 348, 386
AjnI	CCWGG	1 cut(s)	522
AjuI	GAANNNNNNNTTGG	2 cut(s)	99, 131
AluBI	AGCT	1 cut(s)	506
AluI	AGCT	1 cut(s)	506
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	2 cut(s)	81, 391
AlwI	GGATC	2 cut(s)	297, 438
Aor13HI	TCCGGA	1 cut(s)	56
AoxI	GGCC	2 cut(s)	264, 315
ApeKI	GCWGC	3 cut(s)	488, 506, 527
AspLEI	GCGC	1 cut(s)	532
AsuHPI	GGTGA	2 cut(s)	149, 350
BaeGI	GKGCMC	1 cut(s)	190
BalI	TGGCCA	1 cut(s)	266
BanII	GRGCYC	1 cut(s)	406
BarI	GAAGNNNNNNTAC	2 cut(s)	54, 86
BbsI	GAAGAC	3 cut(s)	69, 353, 425
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	3 cut(s)	493, 500, 539
BccI	CCATC	1 cut(s)	440
BceAI	ACGGC	1 cut(s)	302
BciT130I	CCWGG	1 cut(s)	524
BciVI	GTATCC	1 cut(s)	317
BclI	TGATCA	1 cut(s)	12
BcoDI	GTCTC	2 cut(s)	81, 391
BfaI	CTAG	1 cut(s)	351
BfmI	CTRYAG	1 cut(s)	328
BfoI	RGCGCY	1 cut(s)	533
BfuAI	ACCTGC	1 cut(s)	482
BfuI	GTATCC	1 cut(s)	317
BisI	GCNGC	3 cut(s)	489, 507, 528
BlsI	GCNGC	3 cut(s)	490, 508, 529
BmcAI	AGTACT	1 cut(s)	274
Bme1390I	CCNGG	1 cut(s)	524
BmiI	GGNNCC	1 cut(s)	55
BmrFI	CCNGG	1 cut(s)	524
BmsI	GCATC	2 cut(s)	229, 291
BpiI	GAAGAC	3 cut(s)	69, 353, 425
BplI	GAGNNNNNCTC	2 cut(s)	388, 420
Bpu10I	CCTNAGC	1 cut(s)	376
BsaBI	GATNNNNATC	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	358
BsaJI	CCNNGG	2 cut(s)	74, 514
BsaWI	WCCGGW	1 cut(s)	56
Bse118I	RCCGGY	1 cut(s)	354
Bse3DI	GCAATG	1 cut(s)	132
Bse8I	GATNNNNATC	1 cut(s)	219
BseAI	TCCGGA	1 cut(s)	56
BseBI	CCWGG	1 cut(s)	524
BseDI	CCNNGG	2 cut(s)	74, 514
BseGI	GGATG	1 cut(s)	93
BseJI	GATNNNNATC	1 cut(s)	219
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	398
BseRI	GAGGAG	1 cut(s)	164
BseSI	GKGCMC	1 cut(s)	190
BseXI	GCAGC	3 cut(s)	493, 500, 539
BshFI	GGCC	2 cut(s)	266, 317
BsiHKAI	GWGCWC	1 cut(s)	156
BsiSI	CCGG	2 cut(s)	57, 355
BslFI	GGGAC	1 cut(s)	523
BsmAI	GTCTC	2 cut(s)	81, 391
BsmBI	CGTCTC	1 cut(s)	391
BsmFI	GGGAC	1 cut(s)	523
BsnI	GGCC	2 cut(s)	266, 317
Bsp1286I	GDGCHC	3 cut(s)	156, 190, 406
Bsp13I	TCCGGA	1 cut(s)	56
Bsp143I	GATC	3 cut(s)	12, 289, 430
BspANI	GGCC	2 cut(s)	266, 317
BspCNI	CTCAG	1 cut(s)	399
BspEI	TCCGGA	1 cut(s)	56
BspHI	TCATGA	1 cut(s)	15
BspLI	GGNNCC	1 cut(s)	55
BspMI	ACCTGC	1 cut(s)	482
BspPI	GGATC	2 cut(s)	297, 438
BsrDI	GCAATG	1 cut(s)	132
BsrFI	RCCGGY	1 cut(s)	354
BssAI	RCCGGY	1 cut(s)	354
BssECI	CCNNGG	2 cut(s)	74, 514
BssMI	GATC	3 cut(s)	12, 289, 430
BssNI	GRCGYC	1 cut(s)	358
BssT1I	CCWWGG	1 cut(s)	514
Bst2UI	CCWGG	1 cut(s)	524
Bst4CI	ACNGT	3 cut(s)	75, 424, 537
BstACI	GRCGYC	1 cut(s)	358
BstC8I	GCNNGC	2 cut(s)	356, 511
BstDEI	CTNAG	2 cut(s)	376, 407
BstDSI	CCRYGG	1 cut(s)	74
BstF5I	GGATG	1 cut(s)	93
BstH2I	RGCGCY	1 cut(s)	533
BstHHI	GCGC	1 cut(s)	532
BstKTI	GATC	3 cut(s)	15, 292, 433
BstMAI	GTCTC	2 cut(s)	81, 391
BstMBI	GATC	3 cut(s)	12, 289, 430
BstMWI	GCNNNNNNNGC	1 cut(s)	485
BstNI	CCWGG	1 cut(s)	524
BstNSI	RCATGY	2 cut(s)	238, 513
BstSCI	CCNGG	1 cut(s)	522
BstSFI	CTRYAG	1 cut(s)	328
BstSLI	GKGCMC	1 cut(s)	190
BstV1I	GCAGC	3 cut(s)	493, 500, 539
BstV2I	GAAGAC	3 cut(s)	69, 353, 425
BsuI	GTATCC	1 cut(s)	317
BsuRI	GGCC	2 cut(s)	266, 317
BtgI	CCRYGG	1 cut(s)	74
BtsCI	GGATG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	533
BveI	ACCTGC	1 cut(s)	482
Cac8I	GCNNGC	2 cut(s)	356, 511
CciI	TCATGA	1 cut(s)	15
CfoI	GCGC	1 cut(s)	532
Cfr10I	RCCGGY	1 cut(s)	354
CseI	GACGC	1 cut(s)	347
Csp6I	GTAC	1 cut(s)	273
CviAII	CATG	4 cut(s)	16, 183, 235, 510
CviJI	RGCY	8 cut(s)	54, 266, 317, 354, 404, 450, 506, 519
CviKI_1	RGCY	8 cut(s)	54, 266, 317, 354, 404, 450, 506, 519
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	2 cut(s)	376, 407
DpnI	GATC	3 cut(s)	14, 291, 432
DpnII	GATC	3 cut(s)	12, 289, 430
EaeI	YGGCCR	2 cut(s)	264, 315
Eco130I	CCWWGG	1 cut(s)	514
Eco24I	GRGCYC	1 cut(s)	406
Eco57I	CTGAAG	1 cut(s)	434
EcoRII	CCWGG	1 cut(s)	522
EcoT14I	CCWWGG	1 cut(s)	514
EcoT38I	GRGCYC	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	514
Esp3I	CGTCTC	1 cut(s)	391
FaeI	CATG	4 cut(s)	19, 186, 238, 513
FaqI	GGGAC	1 cut(s)	523
FatI	CATG	4 cut(s)	15, 182, 234, 509
FbaI	TGATCA	1 cut(s)	12
FblI	GTMKAC	1 cut(s)	143
Fnu4HI	GCNGC	3 cut(s)	489, 507, 528
FokI	GGATG	1 cut(s)	80
FriOI	GRGCYC	1 cut(s)	406
Fsp4HI	GCNGC	3 cut(s)	489, 507, 528
FspBI	CTAG	1 cut(s)	351
GlaI	GCGC	1 cut(s)	531
GluI	GCNGC	3 cut(s)	489, 507, 528
HaeII	RGCGCY	1 cut(s)	533
HaeIII	GGCC	2 cut(s)	266, 317
HapII	CCGG	2 cut(s)	57, 355
HgaI	GACGC	1 cut(s)	347
HhaI	GCGC	1 cut(s)	532
Hin1I	GRCGYC	1 cut(s)	358
Hin1II	CATG	4 cut(s)	19, 186, 238, 513
Hin6I	GCGC	1 cut(s)	530
HinP1I	GCGC	1 cut(s)	530
HincII	GTYRAC	1 cut(s)	144
HindII	GTYRAC	1 cut(s)	144
HinfI	GANTC	4 cut(s)	32, 140, 367, 409
HpaII	CCGG	2 cut(s)	57, 355
HphI	GGTGA	2 cut(s)	149, 350
Hpy166II	GTNNAC	2 cut(s)	144, 196
Hpy188I	TCNGA	3 cut(s)	366, 408, 414
Hpy188III	TCNNGA	3 cut(s)	16, 57, 86
Hpy8I	GTNNAC	2 cut(s)	144, 196
HpyCH4III	ACNGT	3 cut(s)	75, 424, 537
HpyCH4IV	ACGT	1 cut(s)	208
HpyCH4V	TGCA	4 cut(s)	81, 205, 220, 509
HpyF10VI	GCNNNNNNNGC	1 cut(s)	485
HpyF3I	CTNAG	2 cut(s)	376, 407
HpySE526I	ACGT	1 cut(s)	208
Hsp92I	GRCGYC	1 cut(s)	358
Hsp92II	CATG	4 cut(s)	19, 186, 238, 513
HspAI	GCGC	1 cut(s)	530
Kpn2I	TCCGGA	1 cut(s)	56
KroI	GCCGGC	1 cut(s)	354
KroNI	GCCGGC	1 cut(s)	356
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	3 cut(s)	12, 289, 430
LmnI	GCTCC	2 cut(s)	59, 151
LpnPI	CCDG	6 cut(s)	70, 368, 459, 477, 509, 536
Lsp1109I	GCAGC	3 cut(s)	493, 500, 539
LweI	GCATC	2 cut(s)	229, 291
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	1 cut(s)	208
MalI	GATC	3 cut(s)	14, 291, 432
MboI	GATC	3 cut(s)	12, 289, 430
MboII	GAAGA	5 cut(s)	74, 224, 353, 427, 430
MhlI	GDGCHC	3 cut(s)	156, 190, 406
MlsI	TGGCCA	1 cut(s)	266
MluCI	AATT	4 cut(s)	228, 256, 435, 465
MluNI	TGGCCA	1 cut(s)	266
MlyI	GAGTC	3 cut(s)	26, 149, 418
MmeI	TCCRAC	2 cut(s)	97, 301
MnlI	CCTC	4 cut(s)	115, 142, 168, 421
Mox20I	TGGCCA	1 cut(s)	266
MroI	TCCGGA	1 cut(s)	56
MroNI	GCCGGC	1 cut(s)	354
MscI	TGGCCA	1 cut(s)	266
MslI	CAYNNNNRTG	1 cut(s)	102
Msp20I	TGGCCA	1 cut(s)	266
MspI	CCGG	2 cut(s)	57, 355
MspR9I	CCNGG	1 cut(s)	524
MvaI	CCWGG	1 cut(s)	524
MwoI	GCNNNNNNNGC	1 cut(s)	485
NaeI	GCCGGC	1 cut(s)	356
NdeII	GATC	3 cut(s)	12, 289, 430
NgoMIV	GCCGGC	1 cut(s)	354
NlaIII	CATG	4 cut(s)	19, 186, 238, 513
NlaIV	GGNNCC	1 cut(s)	55
NspI	RCATGY	2 cut(s)	238, 513
PaeI	GCATGC	1 cut(s)	513
PagI	TCATGA	1 cut(s)	15
PaqCI	CACCTGC	1 cut(s)	482
PdiI	GCCGGC	1 cut(s)	356
PfeI	GAWTC	1 cut(s)	367
PflFI	GACNNNGTC	1 cut(s)	35
PkrI	GCNGC	3 cut(s)	490, 508, 529
PleI	GAGTC	3 cut(s)	26, 148, 417
PpsI	GAGTC	3 cut(s)	26, 148, 417
Psp6I	CCWGG	1 cut(s)	522
PspGI	CCWGG	1 cut(s)	522
PspN4I	GGNNCC	1 cut(s)	55
PsyI	GACNNNGTC	1 cut(s)	35
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
RseI	CAYNNNNRTG	1 cut(s)	102
SalI	GTCGAC	1 cut(s)	142
SatI	GCNGC	3 cut(s)	489, 507, 528
Sau3AI	GATC	3 cut(s)	12, 289, 430
ScaI	AGTACT	1 cut(s)	274
SchI	GAGTC	3 cut(s)	26, 149, 418
ScrFI	CCNGG	1 cut(s)	524
SduI	GDGCHC	3 cut(s)	156, 190, 406
SetI	ASST	7 cut(s)	104, 139, 179, 211, 312, 496, 508
SfaNI	GCATC	2 cut(s)	229, 291
SfcI	CTRYAG	1 cut(s)	328
SmiMI	CAYNNNNRTG	1 cut(s)	102
SphI	GCATGC	1 cut(s)	513
Sse9I	AATT	4 cut(s)	228, 256, 435, 465
SspI	AATATT	1 cut(s)	344
SspMI	CTAG	1 cut(s)	351
StyD4I	CCNGG	1 cut(s)	522
StyI	CCWWGG	1 cut(s)	514
TaaI	ACNGT	3 cut(s)	75, 424, 537
TaiI	ACGT	1 cut(s)	211
TaqI	TCGA	3 cut(s)	85, 143, 433
TasI	AATT	4 cut(s)	228, 256, 435, 465
TatI	WGTACW	1 cut(s)	272
TfiI	GAWTC	1 cut(s)	367
TscAI	CASTG	1 cut(s)	540
TseI	GCWGC	3 cut(s)	488, 506, 527
TspDTI	ATGAA	4 cut(s)	17, 32, 143, 442
TspGWI	ACGGA	1 cut(s)	25
TspRI	CASTG	1 cut(s)	540
Tth111I	GACNNNGTC	1 cut(s)	35
XceI	RCATGY	2 cut(s)	238, 513
XmiI	GTMKAC	1 cut(s)	143
XspI	CTAG	1 cut(s)	351
ZrmI	AGTACT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.