Rorug04G0458000

Component of the peroxisomal and mitochondrial division machineries. Plays a role in promoting the fission of mitochondria and peroxisomes

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0017619
Physical Location & Seq
Reverse (-)
61108368 .. 61108862
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0458000.1

Sequence Viewer

Length: 495 bp
ATGAATAGGAACAAGGGGAAGACGAAGACGAAGACGAAGACGAAGACGAAGAAAACGGAAAAGGATGAGGTTGAAGAGTTGCTCCAAGCAGCACAGGACGATATGCTGCTCGGTCTATCCGTAGACTCTCACATATCCCGCCTTTCTGACGTGGACCGCCGTTTCCAGGCCCTCAAACTCAAGTCTCCGACTCCACCTAAAGTTGCCGATGCTAATTCCAGTGCGCCTGCTGTCACATCGATTCAAGTGGATGAAGAGCTCAAAGCAGTCCTCGGAGATGACCTGTCCACCAGATTCGCAGCTCTCAAGGCCTCAGTGCCCATGCCCTCCTCCTCCTCCTCTTCTTCTTCCATAATCGCCGCCAGCTCGGCATTGCACGCTGACTACGACGACGACGACGCTGTTGATGAAGATGATGAAGTTGAAAAGTTGATACGTTGGGCCAAGGACGCCGCTCGCCTTGACCCTTCTCCACCCTCCGACGATGAAGAATGA

Protein Analysis

164

Amino Acids

17.76

Weight (kDa)

4.73

Isoelectric Point (pI)

52.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g07330
rosa_chinensis RchiOBHm_Chr5g0011611
rosa_laevigata RLG00000031846 RLG00000031848
rosa_multiflora Rmu_co8315781.1_g000001 Rmu_sc0009001.1_g000013
rosa_roxburghii Rroxscaffold_1G00064890
rosa_rugosa Rorug04G0458000
rosa_samantha Rh5BG085200 Rh5CG099100 Rh5DG085000
rosa_wichuraiana Rw5G007800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 455
AccI GTMKAC 1 cut(s) 123
AciI CCGC 4 cut(s) 139, 157, 360, 453
AcyI GRCGYC 1 cut(s) 450
AfiI CCNNNNNNNGG 1 cut(s) 166
AgsI TTSAA 3 cut(s) 74, 245, 425
AjiI CACGTC 1 cut(s) 151
AjnI CCWGG 1 cut(s) 165
AluBI AGCT 3 cut(s) 259, 302, 366
AluI AGCT 3 cut(s) 259, 302, 366
Alw21I GWGCWC 1 cut(s) 261
Alw26I GTCTC 1 cut(s) 189
AoxI GGCC 3 cut(s) 168, 309, 441
ApeKI GCWGC 3 cut(s) 89, 106, 299
AspLEI GCGC 1 cut(s) 226
AspS9I GGNCC 3 cut(s) 154, 169, 441
AvaII GGWCC 1 cut(s) 154
BaeGI GKGCMC 1 cut(s) 321
BanII GRGCYC 1 cut(s) 261
BbsI GAAGAC 5 cut(s) 26, 32, 38, 44, 50
Bbv12I GWGCWC 1 cut(s) 261
BbvI GCAGC 3 cut(s) 93, 101, 311
BceAI ACGGC 1 cut(s) 144
BciT130I CCWGG 1 cut(s) 167
BcoDI GTCTC 1 cut(s) 189
BglI GCCNNNNNGGC 1 cut(s) 368
BisI GCNGC 5 cut(s) 90, 107, 300, 360, 453
BlsI GCNGC 5 cut(s) 91, 108, 301, 361, 454
Bme1390I CCNGG 1 cut(s) 167
Bme18I GGWCC 1 cut(s) 154
BmgBI CACGTC 1 cut(s) 151
BmgT120I GGNCC 3 cut(s) 154, 169, 441
BmrFI CCNGG 1 cut(s) 167
BmsI GCATC 1 cut(s) 199
BpiI GAAGAC 5 cut(s) 26, 32, 38, 44, 50
BpuEI CTTGAG 2 cut(s) 164, 290
Bsa29I ATCGAT 1 cut(s) 239
BsaHI GRCGYC 1 cut(s) 450
BsaJI CCNNGG 2 cut(s) 271, 444
Bsc4I CCNNNNNNNGG 1 cut(s) 166
Bse1I ACTGG 1 cut(s) 219
Bse3DI GCAATG 1 cut(s) 371
BseBI CCWGG 1 cut(s) 167
BseCI ATCGAT 1 cut(s) 239
BseDI CCNNGG 2 cut(s) 271, 444
BseGI GGATG 2 cut(s) 70, 256
BseLI CCNNNNNNNGG 1 cut(s) 166
BseMI GCAATG 1 cut(s) 371
BseMII CTCAG 1 cut(s) 327
BseNI ACTGG 1 cut(s) 219
BseRI GAGGAG 4 cut(s) 319, 322, 325, 328
BseSI GKGCMC 1 cut(s) 321
BseXI GCAGC 3 cut(s) 93, 101, 311
BshFI GGCC 3 cut(s) 170, 311, 443
BshVI ATCGAT 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 261
BslI CCNNNNNNNGG 1 cut(s) 166
BsmAI GTCTC 1 cut(s) 189
BsnI GGCC 3 cut(s) 170, 311, 443
Bsp1286I GDGCHC 2 cut(s) 261, 321
BspACI CCGC 4 cut(s) 139, 157, 360, 453
BspANI GGCC 3 cut(s) 170, 311, 443
BspCNI CTCAG 1 cut(s) 326
BspDI ATCGAT 1 cut(s) 239
BspQI GCTCTTC 1 cut(s) 249
BsrBI CCGCTC 1 cut(s) 455
BsrDI GCAATG 1 cut(s) 371
BsrI ACTGG 1 cut(s) 219
BssECI CCNNGG 2 cut(s) 271, 444
BssNI GRCGYC 1 cut(s) 450
BssT1I CCWWGG 1 cut(s) 444
Bst2UI CCWGG 1 cut(s) 167
Bst6I CTCTTC 3 cut(s) 69, 249, 346
BstACI GRCGYC 1 cut(s) 450
BstC8I GCNNGC 4 cut(s) 228, 364, 378, 457
BstDEI CTNAG 1 cut(s) 313
BstF5I GGATG 2 cut(s) 70, 256
BstHHI GCGC 1 cut(s) 226
BstMAI GTCTC 1 cut(s) 189
BstMWI GCNNNNNNNGC 4 cut(s) 308, 368, 377, 449
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 165
BstSLI GKGCMC 1 cut(s) 321
BstV1I GCAGC 3 cut(s) 93, 101, 311
BstV2I GAAGAC 5 cut(s) 26, 32, 38, 44, 50
Bsu15I ATCGAT 1 cut(s) 239
BsuRI GGCC 3 cut(s) 170, 311, 443
BsuTUI ATCGAT 1 cut(s) 239
BtrI CACGTC 1 cut(s) 151
BtsCI GGATG 2 cut(s) 70, 256
BtsIMutI CAGTG 2 cut(s) 226, 321
Cac8I GCNNGC 4 cut(s) 228, 364, 378, 457
CfoI GCGC 1 cut(s) 226
Cfr13I GGNCC 3 cut(s) 154, 169, 441
ClaI ATCGAT 1 cut(s) 239
CseI GACGC 2 cut(s) 407, 458
CviAII CATG 1 cut(s) 322
CviJI RGCY 6 cut(s) 170, 259, 302, 311, 366, 443
CviKI_1 RGCY 6 cut(s) 170, 259, 302, 311, 366, 443
DdeI CTNAG 1 cut(s) 313
Eam1104I CTCTTC 3 cut(s) 69, 249, 346
EarI CTCTTC 3 cut(s) 69, 249, 346
Ecl136II GAGCTC 1 cut(s) 259
Eco130I CCWWGG 1 cut(s) 444
Eco147I AGGCCT 1 cut(s) 311
Eco24I GRGCYC 1 cut(s) 261
Eco47I GGWCC 1 cut(s) 154
Eco53kI GAGCTC 1 cut(s) 259
EcoICRI GAGCTC 1 cut(s) 259
EcoO109I RGGNCCY 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 165
EcoT14I CCWWGG 1 cut(s) 444
EcoT38I GRGCYC 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 444
FaeI CATG 1 cut(s) 325
FaiI YATR 4 cut(s) 104, 134, 323, 353
FatI CATG 1 cut(s) 321
FauI CCCGC 1 cut(s) 146
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 5 cut(s) 90, 107, 300, 360, 453
FokI GGATG 2 cut(s) 77, 263
FriOI GRGCYC 1 cut(s) 261
Fsp4HI GCNGC 5 cut(s) 90, 107, 300, 360, 453
GlaI GCGC 1 cut(s) 225
GluI GCNGC 5 cut(s) 90, 107, 300, 360, 453
HaeIII GGCC 3 cut(s) 170, 311, 443
HgaI GACGC 2 cut(s) 407, 458
HhaI GCGC 1 cut(s) 226
Hin1I GRCGYC 1 cut(s) 450
Hin1II CATG 1 cut(s) 325
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HinfI GANTC 4 cut(s) 125, 190, 241, 294
Hpy166II GTNNAC 3 cut(s) 124, 154, 288
Hpy188I TCNGA 4 cut(s) 148, 189, 275, 481
Hpy8I GTNNAC 3 cut(s) 124, 154, 288
Hpy99I CGWCG 5 cut(s) 392, 395, 398, 401, 485
HpyAV CCTTC 1 cut(s) 477
HpyCH4IV ACGT 2 cut(s) 150, 436
HpyCH4V TGCA 1 cut(s) 376
HpyF10VI GCNNNNNNNGC 4 cut(s) 308, 368, 377, 449
HpyF3I CTNAG 1 cut(s) 313
HpySE526I ACGT 2 cut(s) 150, 436
Hsp92I GRCGYC 1 cut(s) 450
Hsp92II CATG 1 cut(s) 325
HspAI GCGC 1 cut(s) 224
LguI GCTCTTC 1 cut(s) 249
LmnI GCTCC 1 cut(s) 87
LpnPI CCDG 8 cut(s) 80, 152, 179, 232, 240, 296, 304, 376
Lsp1109I GCAGC 3 cut(s) 93, 101, 311
LweI GCATC 1 cut(s) 199
MaeII ACGT 2 cut(s) 150, 436
MaeIII GTNAC 1 cut(s) 232
MbiI CCGCTC 1 cut(s) 455
MhlI GDGCHC 2 cut(s) 261, 321
MluCI AATT 1 cut(s) 214
MlyI GAGTC 2 cut(s) 119, 184
MmeI TCCRAC 1 cut(s) 212
MspR9I CCNGG 1 cut(s) 167
MvaI CCWGG 1 cut(s) 167
MwoI GCNNNNNNNGC 4 cut(s) 308, 368, 377, 449
NlaIII CATG 1 cut(s) 325
NmeAIII GCCGAG 1 cut(s) 347
NmuCI GTSAC 1 cut(s) 232
PceI AGGCCT 1 cut(s) 311
PciSI GCTCTTC 1 cut(s) 249
PcsI WCGNNNNNNNCGW 3 cut(s) 117, 384, 393
PfeI GAWTC 2 cut(s) 241, 294
PkrI GCNGC 5 cut(s) 91, 108, 301, 361, 454
PleI GAGTC 2 cut(s) 119, 184
PpsI GAGTC 2 cut(s) 119, 184
Psp124BI GAGCTC 1 cut(s) 261
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PspPI GGNCC 3 cut(s) 154, 169, 441
SacI GAGCTC 1 cut(s) 261
SapI GCTCTTC 1 cut(s) 249
SatI GCNGC 5 cut(s) 90, 107, 300, 360, 453
Sau96I GGNCC 3 cut(s) 154, 169, 441
SchI GAGTC 2 cut(s) 119, 184
ScrFI CCNGG 1 cut(s) 167
SduI GDGCHC 2 cut(s) 261, 321
SetI ASST 8 cut(s) 72, 153, 199, 261, 285, 304, 368, 439
SfaNI GCATC 1 cut(s) 199
SinI GGWCC 1 cut(s) 154
SmlI CTYRAG 2 cut(s) 179, 305
SmoI CTYRAG 2 cut(s) 179, 305
Sse9I AATT 1 cut(s) 214
SseBI AGGCCT 1 cut(s) 311
SsiI CCGC 4 cut(s) 139, 157, 360, 453
SstI GAGCTC 1 cut(s) 261
StuI AGGCCT 1 cut(s) 311
StyD4I CCNGG 1 cut(s) 165
StyI CCWWGG 1 cut(s) 444
TaiI ACGT 2 cut(s) 153, 439
TaqI TCGA 1 cut(s) 239
TaqII GACCGA 1 cut(s) 101
TasI AATT 1 cut(s) 214
TauI GCSGC 2 cut(s) 362, 455
TfiI GAWTC 2 cut(s) 241, 294
TscAI CASTG 2 cut(s) 226, 321
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 3 cut(s) 89, 106, 299
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 4 cut(s) 17, 267, 423, 432
TspGWI ACGGA 2 cut(s) 71, 109
TspRI CASTG 2 cut(s) 226, 321
VpaK11BI GGWCC 1 cut(s) 154
XmiI GTMKAC 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.