Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0017619

Physical Location & Seq

Genomic Coordinates Reverse (-)

8692970 .. 8693521

Gene Structure 552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031846

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAAAGAGATGATGAACAACATTTTTGACTCCGTCAGTTCCTTGGTTGGCTCCGGAGAAGACCATATACCATGGTGCAATCGAGACATCATCCATAGGTGTGAGATAGAAGTTAGAGAGGCAATGAACAAAGGTGAGTCGACAGAGGTGCACAAGAGCAAAAGCATAATGAGGTTATCATGGGCACTTGTTCACTCAATGCAACGTGAAGATGTGCAACGTGGAATTGACATGCTACTACAAGCAACTAATAATTCAATGGCCAAAAGTACCAACTTCCCTTTGGATCAACGAGAGATGCTTTACCTTATGGCCGTTGGATACTACAGAAGTGGTGAATATTCAGCTAGCCGGCGTCTTCTGAATCGGTGCTTAGGGATTGAACCAAAATGGAGACGGGCTCTGAGTCTGAAGAAGACAGTTGAGGATCGAATTGTGAAAGATGGCTTCATTGGAATAGGAATTACTGCTGGTGCTATTATAGCAGCAGGTGGGATTGTAGCTGCATGCCTTGGCTACCAGGCAGCTCCACTGGCCAATCGTAGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006996 GO:0007005 GO:0007031 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016559 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04137 ko04139 map04137 map04139

Pfam Domains

Protein Families

Fis1_TPR_C Fis1_TPR_N

Protein Analysis

184

Amino Acids

20.47

Weight (kDa)

8.7

Isoelectric Point (pI)

41.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fis1_TPR_N	PF14852	55 - 79	1.5e-08	Fis1 N-terminal tetratricopeptide repeat
Fis1_TPR_C	PF14853	98 - 149	9.3e-20	Fis1 C-terminal tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017619)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07330
rosa_chinensis	RchiOBHm_Chr5g0011611
rosa_laevigata	RLG00000031846 RLG00000031848
rosa_multiflora	Rmu_co8315781.1_g000001 Rmu_sc0009001.1_g000013
rosa_roxburghii	Rroxscaffold_1G00064890
rosa_rugosa	Rorug04G0458000
rosa_samantha	Rh5BG085200 Rh5CG099100 Rh5DG085000
rosa_wichuraiana	Rw5G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	479
Acc36I	ACCTGC	1 cut(s)	479
AccI	GTMKAC	1 cut(s)	140
AccIII	TCCGGA	1 cut(s)	53
AclWI	GGATC	2 cut(s)	294, 435
AcoI	YGGCCR	3 cut(s)	261, 312, 534
AcuI	CTGAAG	1 cut(s)	431
AcyI	GRCGYC	1 cut(s)	355
AfaI	GTAC	1 cut(s)	271
AgsI	TTSAA	2 cut(s)	258, 383
AjnI	CCWGG	1 cut(s)	519
AluBI	AGCT	3 cut(s)	347, 503, 527
AluI	AGCT	3 cut(s)	347, 503, 527
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	2 cut(s)	78, 388
Alw44I	GTGCAC	1 cut(s)	149
AlwI	GGATC	2 cut(s)	294, 435
Aor13HI	TCCGGA	1 cut(s)	53
AoxI	GGCC	3 cut(s)	261, 312, 534
ApaLI	GTGCAC	1 cut(s)	149
ApeKI	GCWGC	3 cut(s)	485, 503, 524
AsuHPI	GGTGA	2 cut(s)	146, 347
AsuNHI	GCTAGC	1 cut(s)	347
BaeGI	GKGCMC	2 cut(s)	153, 187
BalI	TGGCCA	2 cut(s)	263, 536
BanII	GRGCYC	1 cut(s)	403
BarI	GAAGNNNNNNTAC	2 cut(s)	51, 83
BbsI	GAAGAC	3 cut(s)	66, 350, 422
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	3 cut(s)	490, 497, 536
BccI	CCATC	1 cut(s)	437
BceAI	ACGGC	1 cut(s)	299
BcgI	CGANNNNNNTGC	2 cut(s)	130, 164
BciT130I	CCWGG	1 cut(s)	521
BciVI	GTATCC	1 cut(s)	314
BcoDI	GTCTC	2 cut(s)	78, 388
BfaI	CTAG	1 cut(s)	348
BfmI	CTRYAG	1 cut(s)	325
BfuAI	ACCTGC	1 cut(s)	479
BfuI	GTATCC	1 cut(s)	314
BisI	GCNGC	3 cut(s)	486, 504, 525
BlsI	GCNGC	3 cut(s)	487, 505, 526
Bme1390I	CCNGG	1 cut(s)	521
BmiI	GGNNCC	1 cut(s)	52
BmrFI	CCNGG	1 cut(s)	521
BmsI	GCATC	1 cut(s)	288
BmtI	GCTAGC	1 cut(s)	351
BpiI	GAAGAC	3 cut(s)	66, 350, 422
BplI	GAGNNNNNCTC	2 cut(s)	385, 417
Bpu10I	CCTNAGC	1 cut(s)	373
BsaHI	GRCGYC	1 cut(s)	355
BsaJI	CCNNGG	3 cut(s)	42, 71, 511
BsaWI	WCCGGW	1 cut(s)	53
Bse118I	RCCGGY	1 cut(s)	351
Bse1I	ACTGG	1 cut(s)	537
Bse3DI	GCAATG	1 cut(s)	129
BseAI	TCCGGA	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	521
BseDI	CCNNGG	3 cut(s)	42, 71, 511
BseGI	GGATG	1 cut(s)	90
BseMI	GCAATG	1 cut(s)	129
BseMII	CTCAG	1 cut(s)	395
BseNI	ACTGG	1 cut(s)	537
BseSI	GKGCMC	2 cut(s)	153, 187
BseXI	GCAGC	3 cut(s)	490, 497, 536
BshFI	GGCC	3 cut(s)	263, 314, 536
BsiHKAI	GWGCWC	1 cut(s)	153
BsiSI	CCGG	2 cut(s)	54, 352
BsmAI	GTCTC	2 cut(s)	78, 388
BsmBI	CGTCTC	1 cut(s)	388
BsnI	GGCC	3 cut(s)	263, 314, 536
Bsp1286I	GDGCHC	3 cut(s)	153, 187, 403
Bsp13I	TCCGGA	1 cut(s)	53
Bsp143I	GATC	2 cut(s)	286, 427
Bsp19I	CCATGG	1 cut(s)	71
BspANI	GGCC	3 cut(s)	263, 314, 536
BspCNI	CTCAG	1 cut(s)	396
BspEI	TCCGGA	1 cut(s)	53
BspLI	GGNNCC	1 cut(s)	52
BspMI	ACCTGC	1 cut(s)	479
BspOI	GCTAGC	1 cut(s)	351
BspPI	GGATC	2 cut(s)	294, 435
BsrDI	GCAATG	1 cut(s)	129
BsrFI	RCCGGY	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	537
BssAI	RCCGGY	1 cut(s)	351
BssECI	CCNNGG	3 cut(s)	42, 71, 511
BssMI	GATC	2 cut(s)	286, 427
BssNI	GRCGYC	1 cut(s)	355
BssT1I	CCWWGG	3 cut(s)	42, 71, 511
Bst2UI	CCWGG	1 cut(s)	521
Bst4CI	ACNGT	1 cut(s)	421
BstACI	GRCGYC	1 cut(s)	355
BstC8I	GCNNGC	3 cut(s)	349, 353, 508
BstDEI	CTNAG	2 cut(s)	373, 404
BstDSI	CCRYGG	1 cut(s)	71
BstF5I	GGATG	1 cut(s)	90
BstKTI	GATC	2 cut(s)	289, 430
BstMAI	GTCTC	2 cut(s)	78, 388
BstMBI	GATC	2 cut(s)	286, 427
BstMWI	GCNNNNNNNGC	2 cut(s)	482, 533
BstNI	CCWGG	1 cut(s)	521
BstNSI	RCATGY	2 cut(s)	235, 510
BstSCI	CCNGG	1 cut(s)	519
BstSFI	CTRYAG	1 cut(s)	325
BstSLI	GKGCMC	2 cut(s)	153, 187
BstV1I	GCAGC	3 cut(s)	490, 497, 536
BstV2I	GAAGAC	3 cut(s)	66, 350, 422
BsuI	GTATCC	1 cut(s)	314
BsuRI	GGCC	3 cut(s)	263, 314, 536
BtgI	CCRYGG	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	530
BveI	ACCTGC	1 cut(s)	479
Cac8I	GCNNGC	3 cut(s)	349, 353, 508
Cfr10I	RCCGGY	1 cut(s)	351
CseI	GACGC	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	270
CviAII	CATG	4 cut(s)	72, 180, 232, 507
CviQI	GTAC	1 cut(s)	270
DdeI	CTNAG	2 cut(s)	373, 404
DpnI	GATC	2 cut(s)	288, 429
DpnII	GATC	2 cut(s)	286, 427
EaeI	YGGCCR	3 cut(s)	261, 312, 534
Eco130I	CCWWGG	3 cut(s)	42, 71, 511
Eco24I	GRGCYC	1 cut(s)	403
Eco57I	CTGAAG	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	519
EcoT14I	CCWWGG	3 cut(s)	42, 71, 511
EcoT38I	GRGCYC	1 cut(s)	403
ErhI	CCWWGG	3 cut(s)	42, 71, 511
Esp3I	CGTCTC	1 cut(s)	388
FaeI	CATG	4 cut(s)	75, 183, 235, 510
FatI	CATG	4 cut(s)	71, 179, 231, 506
FblI	GTMKAC	1 cut(s)	140
Fnu4HI	GCNGC	3 cut(s)	486, 504, 525
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	403
Fsp4HI	GCNGC	3 cut(s)	486, 504, 525
FspBI	CTAG	1 cut(s)	348
GluI	GCNGC	3 cut(s)	486, 504, 525
HaeIII	GGCC	3 cut(s)	263, 314, 536
HapII	CCGG	2 cut(s)	54, 352
HgaI	GACGC	1 cut(s)	344
Hin1I	GRCGYC	1 cut(s)	355
Hin1II	CATG	4 cut(s)	75, 183, 235, 510
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HinfI	GANTC	4 cut(s)	29, 137, 364, 406
HpaII	CCGG	2 cut(s)	54, 352
HphI	GGTGA	2 cut(s)	146, 347
Hpy166II	GTNNAC	3 cut(s)	141, 151, 193
Hpy188I	TCNGA	3 cut(s)	363, 405, 411
Hpy188III	TCNNGA	2 cut(s)	54, 83
Hpy8I	GTNNAC	3 cut(s)	141, 151, 193
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4IV	ACGT	2 cut(s)	205, 220
HpyCH4V	TGCA	5 cut(s)	78, 151, 202, 217, 506
HpyF10VI	GCNNNNNNNGC	2 cut(s)	482, 533
HpyF3I	CTNAG	2 cut(s)	373, 404
HpySE526I	ACGT	2 cut(s)	205, 220
Hsp92I	GRCGYC	1 cut(s)	355
Hsp92II	CATG	4 cut(s)	75, 183, 235, 510
Kpn2I	TCCGGA	1 cut(s)	53
KroI	GCCGGC	1 cut(s)	351
KroNI	GCCGGC	1 cut(s)	353
Kzo9I	GATC	2 cut(s)	286, 427
LmnI	GCTCC	2 cut(s)	56, 532
LpnPI	CCDG	7 cut(s)	67, 365, 456, 474, 506, 518, 533
Lsp1109I	GCAGC	3 cut(s)	490, 497, 536
LweI	GCATC	1 cut(s)	288
MaeI	CTAG	1 cut(s)	348
MaeII	ACGT	2 cut(s)	205, 220
MalI	GATC	2 cut(s)	288, 429
MboI	GATC	2 cut(s)	286, 427
MboII	GAAGA	5 cut(s)	71, 221, 350, 424, 427
MhlI	GDGCHC	3 cut(s)	153, 187, 403
MlsI	TGGCCA	2 cut(s)	263, 536
MluCI	AATT	4 cut(s)	225, 253, 432, 462
MluNI	TGGCCA	2 cut(s)	263, 536
MlyI	GAGTC	3 cut(s)	23, 146, 415
MmeI	TCCRAC	1 cut(s)	298
MnlI	CCTC	4 cut(s)	112, 139, 165, 418
Mox20I	TGGCCA	2 cut(s)	263, 536
MroI	TCCGGA	1 cut(s)	53
MroNI	GCCGGC	1 cut(s)	351
MscI	TGGCCA	2 cut(s)	263, 536
MslI	CAYNNNNRTG	1 cut(s)	99
Msp20I	TGGCCA	2 cut(s)	263, 536
MspI	CCGG	2 cut(s)	54, 352
MspR9I	CCNGG	1 cut(s)	521
MvaI	CCWGG	1 cut(s)	521
MwoI	GCNNNNNNNGC	2 cut(s)	482, 533
NaeI	GCCGGC	1 cut(s)	353
NcoI	CCATGG	1 cut(s)	71
NdeII	GATC	2 cut(s)	286, 427
NgoMIV	GCCGGC	1 cut(s)	351
NheI	GCTAGC	1 cut(s)	347
NlaIII	CATG	4 cut(s)	75, 183, 235, 510
NlaIV	GGNNCC	1 cut(s)	52
NspI	RCATGY	2 cut(s)	235, 510
PaeI	GCATGC	1 cut(s)	510
PaqCI	CACCTGC	1 cut(s)	479
PdiI	GCCGGC	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	364
PflFI	GACNNNGTC	1 cut(s)	32
PkrI	GCNGC	3 cut(s)	487, 505, 526
PleI	GAGTC	3 cut(s)	23, 145, 414
PpsI	GAGTC	3 cut(s)	23, 145, 414
Psp6I	CCWGG	1 cut(s)	519
PspGI	CCWGG	1 cut(s)	519
PspN4I	GGNNCC	1 cut(s)	52
PsyI	GACNNNGTC	1 cut(s)	32
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
RseI	CAYNNNNRTG	1 cut(s)	99
SalI	GTCGAC	1 cut(s)	139
SatI	GCNGC	3 cut(s)	486, 504, 525
Sau3AI	GATC	2 cut(s)	286, 427
SchI	GAGTC	3 cut(s)	23, 146, 415
ScrFI	CCNGG	1 cut(s)	521
SduI	GDGCHC	3 cut(s)	153, 187, 403
SfaNI	GCATC	1 cut(s)	288
SfcI	CTRYAG	1 cut(s)	325
SmiMI	CAYNNNNRTG	1 cut(s)	99
SphI	GCATGC	1 cut(s)	510
Sse9I	AATT	4 cut(s)	225, 253, 432, 462
SspI	AATATT	1 cut(s)	341
SspMI	CTAG	1 cut(s)	348
StyD4I	CCNGG	1 cut(s)	519
StyI	CCWWGG	3 cut(s)	42, 71, 511
TaaI	ACNGT	1 cut(s)	421
TaiI	ACGT	2 cut(s)	208, 223
TaqI	TCGA	3 cut(s)	82, 140, 430
TasI	AATT	4 cut(s)	225, 253, 432, 462
TfiI	GAWTC	1 cut(s)	364
TscAI	CASTG	1 cut(s)	537
TseI	GCWGC	3 cut(s)	485, 503, 524
TspDTI	ATGAA	4 cut(s)	17, 29, 140, 439
TspGWI	ACGGA	1 cut(s)	22
TspRI	CASTG	1 cut(s)	537
Tth111I	GACNNNGTC	1 cut(s)	32
VneI	GTGCAC	1 cut(s)	149
XceI	RCATGY	2 cut(s)	235, 510
XcmI	CCANNNNNNNNNTGG	1 cut(s)	280
XmiI	GTMKAC	1 cut(s)	140
XspI	CTAG	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.