Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009001.1

Orthogroup ID

OG0017619

Physical Location & Seq

Genomic Coordinates Reverse (-)

76061 .. 76612

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009001.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atgaaagagatgatcatgaacaacatttttgactccgtcagttccttgtttggctccggagaagaccatataccatggtgcaatcgagacatcatccataggtgtgagatagaagttggagaggcaatgaacaaaggtgagtcgacagaggagcacaagagcaaaagcataatgaggttatcatgggcacttgttcactcaatgcaacgtgaagatgtgcaacgtggaattgacatgctactacaagcaactaataattcaatggccaaaataagtactaactcccctttggatcaacgagagatgctttaccttatggccgttggatactacagaagtggtgaatattcaactagccggcgtcttctgaatcggtgcttagggattgaacaaaaatggagacgggctctgagtctgaagaagacagttgaggatcgaattgtgaaagatggcttcattggaataggaattactgctggtgctattatagcagcaggtgggattgtagctgcatgccttggctaccaggcagcgccactgtcccaatcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006996 GO:0007005 GO:0007031 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016559 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04137 ko04139 map04137 map04139

Pfam Domains

Protein Families

Fis1_TPR_C Fis1_TPR_N

Protein Analysis

183

Amino Acids

20.43

Weight (kDa)

7.69

Isoelectric Point (pI)

45.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017619)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07330
rosa_chinensis	RchiOBHm_Chr5g0011611
rosa_laevigata	RLG00000031846 RLG00000031848
rosa_multiflora	Rmu_co8315781.1_g000001 Rmu_sc0009001.1_g000013
rosa_roxburghii	Rroxscaffold_1G00064890
rosa_rugosa	Rorug04G0458000
rosa_samantha	Rh5BG085200 Rh5CG099100 Rh5DG085000
rosa_wichuraiana	Rw5G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	485
Acc36I	ACCTGC	1 cut(s)	485
AccI	GTMKAC	1 cut(s)	143
AccIII	TCCGGA	1 cut(s)	56
AclWI	GGATC	2 cut(s)	300, 441
AcoI	YGGCCR	2 cut(s)	264, 318
AcuI	CTGAAG	1 cut(s)	437
AcyI	GRCGYC	1 cut(s)	361
AfaI	GTAC	1 cut(s)	277
AgsI	TTSAA	3 cut(s)	261, 351, 389
AjnI	CCWGG	1 cut(s)	525
AluBI	AGCT	1 cut(s)	509
AluI	AGCT	1 cut(s)	509
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	2 cut(s)	81, 394
AlwI	GGATC	2 cut(s)	300, 441
Aor13HI	TCCGGA	1 cut(s)	56
AoxI	GGCC	2 cut(s)	264, 318
ApeKI	GCWGC	3 cut(s)	491, 509, 530
AspLEI	GCGC	1 cut(s)	535
AsuHPI	GGTGA	2 cut(s)	149, 353
BaeGI	GKGCMC	1 cut(s)	190
BalI	TGGCCA	1 cut(s)	266
BanII	GRGCYC	1 cut(s)	409
BarI	GAAGNNNNNNTAC	2 cut(s)	54, 86
BbsI	GAAGAC	3 cut(s)	69, 356, 428
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	3 cut(s)	496, 503, 542
BccI	CCATC	1 cut(s)	443
BceAI	ACGGC	1 cut(s)	305
BciT130I	CCWGG	1 cut(s)	527
BciVI	GTATCC	1 cut(s)	320
BclI	TGATCA	1 cut(s)	12
BcoDI	GTCTC	2 cut(s)	81, 394
BfaI	CTAG	1 cut(s)	354
BfmI	CTRYAG	1 cut(s)	331
BfoI	RGCGCY	1 cut(s)	536
BfuAI	ACCTGC	1 cut(s)	485
BfuI	GTATCC	1 cut(s)	320
BisI	GCNGC	3 cut(s)	492, 510, 531
BlsI	GCNGC	3 cut(s)	493, 511, 532
BmcAI	AGTACT	1 cut(s)	277
Bme1390I	CCNGG	1 cut(s)	527
BmiI	GGNNCC	1 cut(s)	55
BmrFI	CCNGG	1 cut(s)	527
BmsI	GCATC	1 cut(s)	294
BpiI	GAAGAC	3 cut(s)	69, 356, 428
BplI	GAGNNNNNCTC	2 cut(s)	391, 423
Bpu10I	CCTNAGC	1 cut(s)	379
BsaHI	GRCGYC	1 cut(s)	361
BsaJI	CCNNGG	2 cut(s)	74, 517
BsaWI	WCCGGW	1 cut(s)	56
Bse118I	RCCGGY	1 cut(s)	357
Bse3DI	GCAATG	1 cut(s)	132
BseAI	TCCGGA	1 cut(s)	56
BseBI	CCWGG	1 cut(s)	527
BseDI	CCNNGG	2 cut(s)	74, 517
BseGI	GGATG	1 cut(s)	93
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	401
BseRI	GAGGAG	1 cut(s)	164
BseSI	GKGCMC	1 cut(s)	190
BseXI	GCAGC	3 cut(s)	496, 503, 542
BshFI	GGCC	2 cut(s)	266, 320
BsiHKAI	GWGCWC	1 cut(s)	156
BsiSI	CCGG	2 cut(s)	57, 358
BslFI	GGGAC	1 cut(s)	526
BsmAI	GTCTC	2 cut(s)	81, 394
BsmBI	CGTCTC	1 cut(s)	394
BsmFI	GGGAC	1 cut(s)	526
BsnI	GGCC	2 cut(s)	266, 320
Bsp1286I	GDGCHC	3 cut(s)	156, 190, 409
Bsp13I	TCCGGA	1 cut(s)	56
Bsp143I	GATC	3 cut(s)	12, 292, 433
Bsp19I	CCATGG	1 cut(s)	74
BspANI	GGCC	2 cut(s)	266, 320
BspCNI	CTCAG	1 cut(s)	402
BspEI	TCCGGA	1 cut(s)	56
BspHI	TCATGA	1 cut(s)	15
BspLI	GGNNCC	1 cut(s)	55
BspMI	ACCTGC	1 cut(s)	485
BspPI	GGATC	2 cut(s)	300, 441
BsrDI	GCAATG	1 cut(s)	132
BsrFI	RCCGGY	1 cut(s)	357
BssAI	RCCGGY	1 cut(s)	357
BssECI	CCNNGG	2 cut(s)	74, 517
BssMI	GATC	3 cut(s)	12, 292, 433
BssNI	GRCGYC	1 cut(s)	361
BssT1I	CCWWGG	2 cut(s)	74, 517
Bst2UI	CCWGG	1 cut(s)	527
Bst4CI	ACNGT	2 cut(s)	427, 540
BstACI	GRCGYC	1 cut(s)	361
BstC8I	GCNNGC	2 cut(s)	359, 514
BstDEI	CTNAG	2 cut(s)	379, 410
BstDSI	CCRYGG	1 cut(s)	74
BstF5I	GGATG	1 cut(s)	93
BstH2I	RGCGCY	1 cut(s)	536
BstHHI	GCGC	1 cut(s)	535
BstKTI	GATC	3 cut(s)	15, 295, 436
BstMAI	GTCTC	2 cut(s)	81, 394
BstMBI	GATC	3 cut(s)	12, 292, 433
BstMWI	GCNNNNNNNGC	1 cut(s)	488
BstNI	CCWGG	1 cut(s)	527
BstNSI	RCATGY	2 cut(s)	238, 516
BstSCI	CCNGG	1 cut(s)	525
BstSFI	CTRYAG	1 cut(s)	331
BstSLI	GKGCMC	1 cut(s)	190
BstV1I	GCAGC	3 cut(s)	496, 503, 542
BstV2I	GAAGAC	3 cut(s)	69, 356, 428
BsuI	GTATCC	1 cut(s)	320
BsuRI	GGCC	2 cut(s)	266, 320
BtgI	CCRYGG	1 cut(s)	74
BtsCI	GGATG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	536
BveI	ACCTGC	1 cut(s)	485
Cac8I	GCNNGC	2 cut(s)	359, 514
CciI	TCATGA	1 cut(s)	15
CfoI	GCGC	1 cut(s)	535
Cfr10I	RCCGGY	1 cut(s)	357
CseI	GACGC	1 cut(s)	350
Csp6I	GTAC	1 cut(s)	276
CviAII	CATG	5 cut(s)	16, 75, 183, 235, 513
CviJI	RGCY	8 cut(s)	54, 266, 320, 357, 407, 453, 509, 522
CviKI_1	RGCY	8 cut(s)	54, 266, 320, 357, 407, 453, 509, 522
CviQI	GTAC	1 cut(s)	276
DdeI	CTNAG	2 cut(s)	379, 410
DpnI	GATC	3 cut(s)	14, 294, 435
DpnII	GATC	3 cut(s)	12, 292, 433
EaeI	YGGCCR	2 cut(s)	264, 318
Eco130I	CCWWGG	2 cut(s)	74, 517
Eco24I	GRGCYC	1 cut(s)	409
Eco57I	CTGAAG	1 cut(s)	437
EcoRII	CCWGG	1 cut(s)	525
EcoT14I	CCWWGG	2 cut(s)	74, 517
EcoT38I	GRGCYC	1 cut(s)	409
ErhI	CCWWGG	2 cut(s)	74, 517
Esp3I	CGTCTC	1 cut(s)	394
FaeI	CATG	5 cut(s)	19, 78, 186, 238, 516
FaqI	GGGAC	1 cut(s)	526
FatI	CATG	5 cut(s)	15, 74, 182, 234, 512
FbaI	TGATCA	1 cut(s)	12
FblI	GTMKAC	1 cut(s)	143
Fnu4HI	GCNGC	3 cut(s)	492, 510, 531
FokI	GGATG	1 cut(s)	80
FriOI	GRGCYC	1 cut(s)	409
Fsp4HI	GCNGC	3 cut(s)	492, 510, 531
FspBI	CTAG	1 cut(s)	354
GlaI	GCGC	1 cut(s)	534
GluI	GCNGC	3 cut(s)	492, 510, 531
HaeII	RGCGCY	1 cut(s)	536
HaeIII	GGCC	2 cut(s)	266, 320
HapII	CCGG	2 cut(s)	57, 358
HgaI	GACGC	1 cut(s)	350
HhaI	GCGC	1 cut(s)	535
Hin1I	GRCGYC	1 cut(s)	361
Hin1II	CATG	5 cut(s)	19, 78, 186, 238, 516
Hin6I	GCGC	1 cut(s)	533
HinP1I	GCGC	1 cut(s)	533
HincII	GTYRAC	1 cut(s)	144
HindII	GTYRAC	1 cut(s)	144
HinfI	GANTC	4 cut(s)	32, 140, 370, 412
HpaII	CCGG	2 cut(s)	57, 358
HphI	GGTGA	2 cut(s)	149, 353
Hpy166II	GTNNAC	2 cut(s)	144, 196
Hpy188I	TCNGA	3 cut(s)	369, 411, 417
Hpy188III	TCNNGA	3 cut(s)	16, 57, 86
Hpy8I	GTNNAC	2 cut(s)	144, 196
HpyCH4III	ACNGT	2 cut(s)	427, 540
HpyCH4IV	ACGT	2 cut(s)	208, 223
HpyCH4V	TGCA	4 cut(s)	81, 205, 220, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	488
HpyF3I	CTNAG	2 cut(s)	379, 410
HpySE526I	ACGT	2 cut(s)	208, 223
Hsp92I	GRCGYC	1 cut(s)	361
Hsp92II	CATG	5 cut(s)	19, 78, 186, 238, 516
HspAI	GCGC	1 cut(s)	533
Kpn2I	TCCGGA	1 cut(s)	56
KroI	GCCGGC	1 cut(s)	357
KroNI	GCCGGC	1 cut(s)	359
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	3 cut(s)	12, 292, 433
LmnI	GCTCC	2 cut(s)	59, 151
LpnPI	CCDG	6 cut(s)	70, 371, 462, 480, 512, 539
Lsp1109I	GCAGC	3 cut(s)	496, 503, 542
LweI	GCATC	1 cut(s)	294
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	2 cut(s)	208, 223
MalI	GATC	3 cut(s)	14, 294, 435
MboI	GATC	3 cut(s)	12, 292, 433
MboII	GAAGA	5 cut(s)	74, 224, 356, 430, 433
MhlI	GDGCHC	3 cut(s)	156, 190, 409
MlsI	TGGCCA	1 cut(s)	266
MluCI	AATT	4 cut(s)	228, 256, 438, 468
MluNI	TGGCCA	1 cut(s)	266
MlyI	GAGTC	3 cut(s)	26, 149, 421
MmeI	TCCRAC	2 cut(s)	97, 304
MnlI	CCTC	4 cut(s)	115, 142, 168, 424
Mox20I	TGGCCA	1 cut(s)	266
MroI	TCCGGA	1 cut(s)	56
MroNI	GCCGGC	1 cut(s)	357
MscI	TGGCCA	1 cut(s)	266
MslI	CAYNNNNRTG	1 cut(s)	102
Msp20I	TGGCCA	1 cut(s)	266
MspI	CCGG	2 cut(s)	57, 358
MspR9I	CCNGG	1 cut(s)	527
MvaI	CCWGG	1 cut(s)	527
MwoI	GCNNNNNNNGC	1 cut(s)	488
NaeI	GCCGGC	1 cut(s)	359
NcoI	CCATGG	1 cut(s)	74
NdeII	GATC	3 cut(s)	12, 292, 433
NgoMIV	GCCGGC	1 cut(s)	357
NlaIII	CATG	5 cut(s)	19, 78, 186, 238, 516
NlaIV	GGNNCC	1 cut(s)	55
NspI	RCATGY	2 cut(s)	238, 516
PaeI	GCATGC	1 cut(s)	516
PagI	TCATGA	1 cut(s)	15
PaqCI	CACCTGC	1 cut(s)	485
PdiI	GCCGGC	1 cut(s)	359
PfeI	GAWTC	1 cut(s)	370
PflFI	GACNNNGTC	1 cut(s)	35
PkrI	GCNGC	3 cut(s)	493, 511, 532
PleI	GAGTC	3 cut(s)	26, 148, 420
PpsI	GAGTC	3 cut(s)	26, 148, 420
Psp6I	CCWGG	1 cut(s)	525
PspGI	CCWGG	1 cut(s)	525
PspN4I	GGNNCC	1 cut(s)	55
PsyI	GACNNNGTC	1 cut(s)	35
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
RseI	CAYNNNNRTG	1 cut(s)	102
SalI	GTCGAC	1 cut(s)	142
SatI	GCNGC	3 cut(s)	492, 510, 531
Sau3AI	GATC	3 cut(s)	12, 292, 433
ScaI	AGTACT	1 cut(s)	277
SchI	GAGTC	3 cut(s)	26, 149, 421
ScrFI	CCNGG	1 cut(s)	527
SduI	GDGCHC	3 cut(s)	156, 190, 409
SetI	ASST	8 cut(s)	104, 139, 179, 211, 226, 315, 499, 511
SfaNI	GCATC	1 cut(s)	294
SfcI	CTRYAG	1 cut(s)	331
SmiMI	CAYNNNNRTG	1 cut(s)	102
SphI	GCATGC	1 cut(s)	516
Sse9I	AATT	4 cut(s)	228, 256, 438, 468
SspI	AATATT	1 cut(s)	347
SspMI	CTAG	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	525
StyI	CCWWGG	2 cut(s)	74, 517
TaaI	ACNGT	2 cut(s)	427, 540
TaiI	ACGT	2 cut(s)	211, 226
TaqI	TCGA	3 cut(s)	85, 143, 436
TasI	AATT	4 cut(s)	228, 256, 438, 468
TatI	WGTACW	1 cut(s)	275
TfiI	GAWTC	1 cut(s)	370
TscAI	CASTG	1 cut(s)	543
TseI	GCWGC	3 cut(s)	491, 509, 530
TspDTI	ATGAA	4 cut(s)	17, 32, 143, 445
TspGWI	ACGGA	1 cut(s)	25
TspRI	CASTG	1 cut(s)	543
Tth111I	GACNNNGTC	1 cut(s)	35
XceI	RCATGY	2 cut(s)	238, 516
XmiI	GTMKAC	1 cut(s)	143
XspI	CTAG	1 cut(s)	354
ZrmI	AGTACT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.