FvH4_3g07700

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
4526642 .. 4529972
3331 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g07700.t1

Sequence Viewer

Length: 1560 bp
ATGGGTTGCCACAGAATTGAACTGGCTCTTGCATTTTTCATCTGTGCATCACTAGCTTGCTTGTCTTATAGTCTCCCTACTGAGTACTCCATAGTGGGAAGTGAAACAGTGAACTTTCCAGCTGAGGAGAGAGTGGTGGAGCTCTTTAGGCTGTGGAGGGAGAAGCACAGGAAGGTGTATAAGCATGCTGAGGAGCATGAGAAGAGGTTTGAGAATTTCAAGAGGAATCTCAGGTTTGTGTTGGAGAAACATGCACAGAAAAAGGCTGCAGCTAATAAGCATGACACTCAGAAAGTTGGGTTGAACAAGTTTGCCGATTTGAGCAATGAGGAGTTCAGGGCGATTTATATGCCGACAAAGATTCAAATGCCGATCAGCAAAAGGGAAAGAATGGCGAGGAGAATGCAGCAGCAAGCAAAAGCAGAGCTGCCAAAGGATGCTCCTTCAAGTTTGGATTGGAGGAAGAAGGGAATTGTCACTCCTATTAAGGACCAAGGCAGTTGTGGAAGTTGTTGGGCATTTTCTTCCACCGGAGGCATCGAAGGAATAAATGCGCTGGTCACCGGAGACCTCATTAGCCTTTCGGAGCAAGAACTTGTGGATTGTGACACTACCAACTATGGCTGTAGTGGAGGCTACATGGACTACGCCTTTGAATGGGTTATTAGCAATGGTGGCATTGACACAGAAGCTGATTATCCTTACACCAGTACCACAGGTTTTGGTGGCACCTGCAACGTCACCAAGGAGGAAACCAAAGTTGTCACCATTGATGGCTATACAGATGTTGAAGAGACAGAGACCGGTCTTTTCAATGCTGTGCTTCAGCAACCCATTTCCGTTGGTATAGATGGCTCTACGTGGGATTTTCAACTATACTCAAGTGGAATTTATGATGGTGATTGCTCTGATGATCCAAATAACATTGATCATGCCGTTCTAATAGTAGGATATGGTTCTGAAAGCGGTGAAGATTACTGGATTGTAAAGAATTCATGGGGAACTAGTTGGGGGATGGAAGGATACTTTTACCTCAGAAGGAATACCGATTTGCCATATGGGGTTTGTGCAGTCAATGCCATGGCTTCATATCCTACCAAAGAGTCATCTGCACCCACTCCTTATCCATCTCCAACTCCTCCACCACCTCCTACACCTGTCTCTCCACCACCCCCACCAGTGACACCGCCACCACCAACTCCAGTGACACCACCACCACCCTCTCCTTCTCCAAGCCAATGCGGAGACTTCTCCTATTGTCCAGCTGATGAGACATGTTGTTGCCTCTATGAATTCTTTGACTACTGCTTCATCTATGGTTGCTGTCCATATGAGAATGCGGTTTGCTGCACTGGAACCGAATACTGCTGTCCAAGTGATTACCCCATTTGCGATGTTGAGGAGGGCCTATGTCTTAAGAATGGCAGAGACTACTTGGGAGTAGCTGCAAGGAAGAGAAAGATTGCCAAGCACAAGTTCCCATGGACTAAAGTAGAGCAAACCGAGAAGACATACCATCCTCTACAGTGGAAGTTGAACCGATTTGCTGCAATGCGCTAG

Protein Analysis

520

Amino Acids

58.0

Weight (kDa)

5.22

Isoelectric Point (pI)

48.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 49 - 112 2e-14 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 148 - 366 7.5e-80 Papain family cysteine protease
Granulin PF00396 425 - 472 6.4e-08 Granulin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013633)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 740
Acc36I ACCTGC 1 cut(s) 740
AccB1I GGYRCC 1 cut(s) 728
AciI CCGC 4 cut(s) 966, 1187, 1242, 1340
AclWI GGATC 1 cut(s) 908
AcsI RAATTY 4 cut(s) 214, 888, 991, 1292
AcuI CTGAAG 1 cut(s) 809
AfaI GTAC 2 cut(s) 86, 712
AfiI CCNNNNNNNGG 1 cut(s) 657
AflII CTTAAG 1 cut(s) 1415
AflIII ACRYGT 1 cut(s) 1274
AgeI ACCGGT 1 cut(s) 803
AhlI ACTAGT 1 cut(s) 1004
AjuI GAANNNNNNNTTGG 2 cut(s) 1460, 1492
AluBI AGCT 8 cut(s) 56, 122, 142, 272, 427, 692, 1265, 1445
AluI AGCT 8 cut(s) 56, 122, 142, 272, 427, 692, 1265, 1445
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 8 cut(s) 77, 561, 788, 794, 1165, 1239, 1265, 1422
AlwI GGATC 1 cut(s) 908
AlwNI CAGNNNCTG 1 cut(s) 692
AoxI GGCC 1 cut(s) 1405
ApeKI GCWGC 8 cut(s) 266, 269, 406, 409, 427, 1347, 1445, 1547
ApoI RAATTY 4 cut(s) 214, 888, 991, 1292
ArsI GACNNNNNNTTYG 2 cut(s) 635, 667
AsiGI ACCGGT 1 cut(s) 803
AspLEI GCGC 2 cut(s) 556, 1557
AspS9I GGNCC 2 cut(s) 490, 1405
AsuHPI GGTGA 5 cut(s) 553, 733, 757, 911, 980
AvaII GGWCC 1 cut(s) 490
BaeI ACNNNNGTAYC 2 cut(s) 694, 727
BanI GGYRCC 1 cut(s) 728
BanII GRGCYC 1 cut(s) 144
BbsI GAAGAC 1 cut(s) 1514
Bbv12I GWGCWC 1 cut(s) 144
BbvCI CCTCAGC 2 cut(s) 123, 189
BbvI GCAGC 8 cut(s) 253, 281, 414, 418, 421, 1334, 1432, 1534
BccI CCATC 6 cut(s) 767, 845, 890, 1009, 1135, 1524
BceAI ACGGC 1 cut(s) 920
BcgI CGANNNNNNTGC 4 cut(s) 331, 365, 385, 419
BciVI GTATCC 1 cut(s) 1016
BclI TGATCA 1 cut(s) 928
BcoDI GTCTC 8 cut(s) 77, 561, 788, 794, 1165, 1239, 1265, 1422
BcuI ACTAGT 1 cut(s) 1004
BfaI CTAG 3 cut(s) 53, 1005, 1558
BfmI CTRYAG 3 cut(s) 267, 625, 1523
BfrI CTTAAG 1 cut(s) 1415
BfuAI ACCTGC 1 cut(s) 740
BfuI GTATCC 1 cut(s) 1016
BisI GCNGC 8 cut(s) 267, 270, 407, 410, 428, 1348, 1446, 1548
BlsI GCNGC 8 cut(s) 268, 271, 408, 411, 429, 1349, 1447, 1549
BmcAI AGTACT 1 cut(s) 86
Bme18I GGWCC 1 cut(s) 490
BmgT120I GGNCC 2 cut(s) 490, 1405
BmiI GGNNCC 2 cut(s) 730, 1357
BmsI GCATC 3 cut(s) 56, 427, 546
BpiI GAAGAC 1 cut(s) 1514
BpmI CTGGAG 1 cut(s) 1185
Bpu10I CCTNAGC 2 cut(s) 123, 189
BpuEI CTTGAG 1 cut(s) 865
BsaAI YACGTR 1 cut(s) 861
BsaI GGTCTC 2 cut(s) 561, 794
BsaJI CCNNGG 4 cut(s) 493, 744, 1080, 1481
BsaWI WCCGGW 3 cut(s) 530, 563, 803
Bsc4I CCNNNNNNNGG 1 cut(s) 657
Bse118I RCCGGY 1 cut(s) 803
Bse1I ACTGG 6 cut(s) 27, 708, 983, 1178, 1202, 1357
Bse3DI GCAATG 3 cut(s) 331, 676, 1557
BseDI CCNNGG 4 cut(s) 493, 744, 1080, 1481
BseGI GGATG 3 cut(s) 442, 1020, 1516
BseLI CCNNNNNNNGG 1 cut(s) 657
BseMI GCAATG 3 cut(s) 331, 676, 1557
BseMII CTCAG 6 cut(s) 72, 114, 180, 244, 302, 1048
BseNI ACTGG 6 cut(s) 27, 708, 983, 1178, 1202, 1357
BseRI GAGGAG 6 cut(s) 140, 206, 344, 412, 1128, 1415
BseXI GCAGC 8 cut(s) 253, 281, 414, 418, 421, 1334, 1432, 1534
BsgI GTGCAG 3 cut(s) 1089, 1095, 1333
BshFI GGCC 1 cut(s) 1407
BshNI GGYRCC 1 cut(s) 728
BshTI ACCGGT 1 cut(s) 803
BsiHKAI GWGCWC 1 cut(s) 144
BsiSI CCGG 3 cut(s) 531, 564, 804
BslI CCNNNNNNNGG 1 cut(s) 657
BsmAI GTCTC 8 cut(s) 77, 561, 788, 794, 1165, 1239, 1265, 1422
BsmI GAATGC 2 cut(s) 408, 1342
BsnI GGCC 1 cut(s) 1407
Bso31I GGTCTC 2 cut(s) 561, 794
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 3 cut(s) 372, 913, 928
Bsp19I CCATGG 2 cut(s) 1080, 1481
BspACI CCGC 4 cut(s) 966, 1187, 1242, 1340
BspANI GGCC 1 cut(s) 1407
BspCNI CTCAG 6 cut(s) 73, 115, 181, 243, 301, 1047
BspLI GGNNCC 2 cut(s) 730, 1357
BspMAI CTGCAG 1 cut(s) 271
BspMI ACCTGC 1 cut(s) 740
BspPI GGATC 1 cut(s) 908
BspT107I GGYRCC 1 cut(s) 728
BspTI CTTAAG 1 cut(s) 1415
BspTNI GGTCTC 2 cut(s) 561, 794
BsrDI GCAATG 3 cut(s) 331, 676, 1557
BsrFI RCCGGY 1 cut(s) 803
BsrI ACTGG 6 cut(s) 27, 708, 983, 1178, 1202, 1357
BssAI RCCGGY 1 cut(s) 803
BssECI CCNNGG 4 cut(s) 493, 744, 1080, 1481
BssMI GATC 3 cut(s) 372, 913, 928
BssT1I CCWWGG 4 cut(s) 493, 744, 1080, 1481
Bst4CI ACNGT 2 cut(s) 109, 1527
Bst6I CTCTTC 3 cut(s) 197, 786, 1448
BstAFI CTTAAG 1 cut(s) 1415
BstAPI GCANNNNNTGC 1 cut(s) 1076
BstBAI YACGTR 1 cut(s) 861
BstC8I GCNNGC 3 cut(s) 58, 186, 414
BstDEI CTNAG 6 cut(s) 81, 123, 189, 230, 288, 1034
BstDSI CCRYGG 2 cut(s) 1080, 1481
BstEII GGTNACC 1 cut(s) 559
BstF5I GGATG 3 cut(s) 442, 1020, 1516
BstHHI GCGC 2 cut(s) 556, 1557
BstKTI GATC 3 cut(s) 375, 916, 931
BstMAI GTCTC 8 cut(s) 77, 561, 788, 794, 1165, 1239, 1265, 1422
BstMBI GATC 3 cut(s) 372, 913, 928
BstMWI GCNNNNNNNGC 4 cut(s) 53, 148, 675, 1076
BstNSI RCATGY 3 cut(s) 188, 254, 1278
BstPI GGTNACC 1 cut(s) 559
BstSFI CTRYAG 3 cut(s) 267, 625, 1523
BstV1I GCAGC 8 cut(s) 253, 281, 414, 418, 421, 1334, 1432, 1534
BstV2I GAAGAC 1 cut(s) 1514
BsuI GTATCC 1 cut(s) 1016
BsuRI GGCC 1 cut(s) 1407
BtgI CCRYGG 2 cut(s) 1080, 1481
BtgZI GCGATG 1 cut(s) 1407
BtsCI GGATG 3 cut(s) 442, 1020, 1516
BtsIMutI CAGTG 5 cut(s) 114, 1185, 1209, 1350, 1532
BveI ACCTGC 1 cut(s) 740
Cac8I GCNNGC 3 cut(s) 58, 186, 414
CaiI CAGNNNCTG 1 cut(s) 692
CfoI GCGC 2 cut(s) 556, 1557
Cfr10I RCCGGY 1 cut(s) 803
Cfr13I GGNCC 2 cut(s) 490, 1405
Csp6I GTAC 2 cut(s) 85, 711
CspAI ACCGGT 1 cut(s) 803
CspCI CAANNNNNGTGG 2 cut(s) 703, 738
CviQI GTAC 2 cut(s) 85, 711
DdeI CTNAG 6 cut(s) 81, 123, 189, 230, 288, 1034
DpnI GATC 3 cut(s) 374, 915, 930
DpnII GATC 3 cut(s) 372, 913, 928
Eam1104I CTCTTC 3 cut(s) 197, 786, 1448
EarI CTCTTC 3 cut(s) 197, 786, 1448
Ecl136II GAGCTC 1 cut(s) 142
Eco130I CCWWGG 4 cut(s) 493, 744, 1080, 1481
Eco24I GRGCYC 1 cut(s) 144
Eco31I GGTCTC 2 cut(s) 561, 794
Eco47I GGWCC 1 cut(s) 490
Eco53kI GAGCTC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 809
Eco91I GGTNACC 1 cut(s) 559
EcoICRI GAGCTC 1 cut(s) 142
EcoO109I RGGNCCY 1 cut(s) 1405
EcoO65I GGTNACC 1 cut(s) 559
EcoRI GAATTC 2 cut(s) 991, 1292
EcoT14I CCWWGG 4 cut(s) 493, 744, 1080, 1481
EcoT38I GRGCYC 1 cut(s) 144
ErhI CCWWGG 4 cut(s) 493, 744, 1080, 1481
FauNDI CATATG 2 cut(s) 1057, 1330
FbaI TGATCA 1 cut(s) 928
Fnu4HI GCNGC 8 cut(s) 267, 270, 407, 410, 428, 1348, 1446, 1548
FokI GGATG 3 cut(s) 449, 1027, 1503
FriOI GRGCYC 1 cut(s) 144
Fsp4HI GCNGC 8 cut(s) 267, 270, 407, 410, 428, 1348, 1446, 1548
FspBI CTAG 3 cut(s) 53, 1005, 1558
GlaI GCGC 2 cut(s) 555, 1556
GluI GCNGC 8 cut(s) 267, 270, 407, 410, 428, 1348, 1446, 1548
GsuI CTGGAG 1 cut(s) 1185
HaeIII GGCC 1 cut(s) 1407
HapII CCGG 3 cut(s) 531, 564, 804
HhaI GCGC 2 cut(s) 556, 1557
Hin6I GCGC 2 cut(s) 554, 1555
HinP1I GCGC 2 cut(s) 554, 1555
HinfI GANTC 3 cut(s) 226, 361, 1103
HpaII CCGG 3 cut(s) 531, 564, 804
HphI GGTGA 5 cut(s) 553, 733, 757, 911, 980
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 5 cut(s) 291, 586, 910, 961, 1037
Hpy188III TCNNGA 1 cut(s) 220
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 7 cut(s) 166, 453, 460, 536, 1013, 1032, 1236
HpyCH4III ACNGT 2 cut(s) 109, 1527
HpyCH4IV ACGT 2 cut(s) 738, 860
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 148, 675, 1076
HpyF3I CTNAG 6 cut(s) 81, 123, 189, 230, 288, 1034
HpySE526I ACGT 2 cut(s) 738, 860
HspAI GCGC 2 cut(s) 554, 1555
Ksp22I TGATCA 1 cut(s) 928
Kzo9I GATC 3 cut(s) 372, 913, 928
LmnI GCTCC 4 cut(s) 139, 193, 445, 586
Lsp1109I GCAGC 8 cut(s) 253, 281, 414, 418, 421, 1334, 1432, 1534
LweI GCATC 3 cut(s) 56, 427, 546
MaeI CTAG 3 cut(s) 53, 1005, 1558
MaeII ACGT 2 cut(s) 738, 860
MaeIII GTNAC 7 cut(s) 475, 559, 605, 739, 763, 1180, 1204
MalI GATC 3 cut(s) 374, 915, 930
MboI GATC 3 cut(s) 372, 913, 928
MboII GAAGA 7 cut(s) 214, 475, 516, 803, 983, 1465, 1519
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 6 cut(s) 15, 214, 471, 888, 991, 1292
MlyI GAGTC 1 cut(s) 1112
MmeI TCCRAC 2 cut(s) 222, 1157
MseI TTAA 2 cut(s) 486, 1416
MspA1I CMGCKG 2 cut(s) 122, 1265
MspCI CTTAAG 1 cut(s) 1415
MspI CCGG 3 cut(s) 531, 564, 804
Mva1269I GAATGC 2 cut(s) 408, 1342
MwoI GCNNNNNNNGC 4 cut(s) 53, 148, 675, 1076
NcoI CCATGG 2 cut(s) 1080, 1481
NdeI CATATG 2 cut(s) 1057, 1330
NdeII GATC 3 cut(s) 372, 913, 928
NlaIV GGNNCC 2 cut(s) 730, 1357
NmuCI GTSAC 7 cut(s) 475, 559, 605, 739, 763, 1180, 1204
NspI RCATGY 3 cut(s) 188, 254, 1278
PaeI GCATGC 1 cut(s) 188
PaqCI CACCTGC 1 cut(s) 740
PciI ACATGT 1 cut(s) 1274
PctI GAATGC 2 cut(s) 408, 1342
PfeI GAWTC 2 cut(s) 226, 361
PinAI ACCGGT 1 cut(s) 803
PkrI GCNGC 8 cut(s) 268, 271, 408, 411, 429, 1349, 1447, 1549
PleI GAGTC 1 cut(s) 1111
PpsI GAGTC 1 cut(s) 1111
Ppu21I YACGTR 1 cut(s) 861
PscI ACATGT 1 cut(s) 1274
Psp124BI GAGCTC 1 cut(s) 144
PspEI GGTNACC 1 cut(s) 559
PspN4I GGNNCC 2 cut(s) 730, 1357
PspPI GGNCC 2 cut(s) 490, 1405
PstI CTGCAG 1 cut(s) 271
PstNI CAGNNNCTG 1 cut(s) 692
PvuII CAGCTG 2 cut(s) 122, 1265
RsaI GTAC 2 cut(s) 86, 712
RsaNI GTAC 2 cut(s) 85, 711
SacI GAGCTC 1 cut(s) 144
SaqAI TTAA 2 cut(s) 486, 1416
SatI GCNGC 8 cut(s) 267, 270, 407, 410, 428, 1348, 1446, 1548
Sau3AI GATC 3 cut(s) 372, 913, 928
Sau96I GGNCC 2 cut(s) 490, 1405
ScaI AGTACT 1 cut(s) 86
SchI GAGTC 1 cut(s) 1112
SduI GDGCHC 1 cut(s) 144
SfaNI GCATC 3 cut(s) 56, 427, 546
SfcI CTRYAG 3 cut(s) 267, 625, 1523
SinI GGWCC 1 cut(s) 490
SmlI CTYRAG 2 cut(s) 880, 1415
SmoI CTYRAG 2 cut(s) 880, 1415
SpeI ACTAGT 1 cut(s) 1004
SphI GCATGC 1 cut(s) 188
Sse9I AATT 6 cut(s) 15, 214, 471, 888, 991, 1292
SsiI CCGC 4 cut(s) 966, 1187, 1242, 1340
SspMI CTAG 3 cut(s) 53, 1005, 1558
SstI GAGCTC 1 cut(s) 144
StyI CCWWGG 4 cut(s) 493, 744, 1080, 1481
TaaI ACNGT 2 cut(s) 109, 1527
TaiI ACGT 2 cut(s) 741, 863
TaqI TCGA 1 cut(s) 540
TasI AATT 6 cut(s) 15, 214, 471, 888, 991, 1292
TatI WGTACW 1 cut(s) 84
TfiI GAWTC 2 cut(s) 226, 361
Tru1I TTAA 2 cut(s) 486, 1416
Tru9I TTAA 2 cut(s) 486, 1416
TscAI CASTG 5 cut(s) 114, 1185, 1209, 1357, 1532
TseFI GTSAC 7 cut(s) 475, 559, 605, 739, 763, 1180, 1204
TseI GCWGC 8 cut(s) 266, 269, 406, 409, 427, 1347, 1445, 1547
Tsp45I GTSAC 7 cut(s) 475, 559, 605, 739, 763, 1180, 1204
TspDTI ATGAA 5 cut(s) 28, 984, 1077, 1300, 1305
TspGWI ACGGA 1 cut(s) 829
TspRI CASTG 5 cut(s) 114, 1185, 1209, 1357, 1532
Vha464I CTTAAG 1 cut(s) 1415
VpaK11BI GGWCC 1 cut(s) 490
XapI RAATTY 4 cut(s) 214, 888, 991, 1292
XceI RCATGY 3 cut(s) 188, 254, 1278
XcmI CCANNNNNNNNNTGG 1 cut(s) 500
XspI CTAG 3 cut(s) 53, 1005, 1558
ZrmI AGTACT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.