Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0013633

Physical Location & Seq

Genomic Coordinates Reverse (-)

28683162 .. 28683799

Gene Structure 638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g27800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGACTACGCTTTTGAATGGGTTATTAGCAATGGTGGTATTGATGCGGAAACTGATTATCCATACACCGGTGTGGATGGTACATGCAGCACCACCAAGGTCTGGTTCCTCACTATAGCTTATAATGAGGAAAACAAAGCCGTCTCCATTGACGGATATGATGATGTGGGAGAAACAGACGGTGATCTTTTATGTGCTGCTGTTCAGCAGCCCATTAGTGTTGGTATGGACGGTTCTGCTTGGGATTTCCAACTTTACACCGGAGGTATCTATGAGGGTGACTGCTCCTCTGATCCAACCGACATTGACCATGCAGCTCTTATAGTGGGATATGGTTCTGAGGGTGATGAAGATTACTGGATTGTAAAGAATTCATGGGGGACTAGTTGGGGGATGGGCGGATACATTTACATTAGAAGGAACACTAGTTTAACATATGGGGTTTGTGCAATCAAAGTATGTACATTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

158

Amino Acids

17.12

Weight (kDa)

4.05

Isoelectric Point (pI)

13.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013633)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07700
malus_domestica	MD05G1300100.v1.1
prunus_persica	Prupe.4G062200_v2.0.a1 Prupe.4G062200_v2.0.a1 Prupe.4G062200_v2.0.a1
pyrus_communis	pycom05g27800 pycom05g27830
rosa_chinensis	RchiOBHm_Chr5g0010931
rosa_laevigata	RLG00000031798
rosa_multiflora	Rmu_sc0001895.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065440
rosa_rugosa	Rorug04G0453800
rosa_samantha	Rh5AG086400 Rh5BG080900 Rh5CG093400 Rh5DG081000
rosa_wichuraiana	Rw0G017430 Rw0G017880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	123
AccB7I	CCANNNNNTGG	1 cut(s)	102
AciI	CCGC	2 cut(s)	47, 399
AclWI	GGATC	1 cut(s)	287
AcsI	RAATTY	1 cut(s)	370
AfaI	GTAC	2 cut(s)	82, 463
AfiI	CCNNNNNNNGG	2 cut(s)	68, 102
AgeI	ACCGGT	1 cut(s)	68
AgsI	TTSAA	2 cut(s)	17, 469
AhlI	ACTAGT	2 cut(s)	383, 425
AjuI	GAANNNNNNNTTGG	2 cut(s)	89, 121
AleI	CACNNNNGTG	1 cut(s)	71
AluBI	AGCT	2 cut(s)	119, 317
AluI	AGCT	2 cut(s)	119, 317
Alw26I	GTCTC	1 cut(s)	148
AlwI	GGATC	1 cut(s)	287
ApeKI	GCWGC	4 cut(s)	87, 197, 208, 314
ApoI	RAATTY	1 cut(s)	370
ArsI	GACNNNNNNTTYG	1 cut(s)	28
AsiGI	ACCGGT	1 cut(s)	68
AsuHPI	GGTGA	3 cut(s)	194, 290, 356
BbvI	GCAGC	4 cut(s)	99, 184, 220, 326
BccI	CCATC	2 cut(s)	71, 388
BceAI	ACGGC	1 cut(s)	125
BciVI	GTATCC	1 cut(s)	395
BcoDI	GTCTC	1 cut(s)	148
BcuI	ACTAGT	2 cut(s)	383, 425
BfaI	CTAG	2 cut(s)	384, 426
BfmI	CTRYAG	1 cut(s)	114
BfuI	GTATCC	1 cut(s)	395
BisI	GCNGC	4 cut(s)	88, 198, 209, 315
BlsI	GCNGC	4 cut(s)	89, 199, 210, 316
BmiI	GGNNCC	1 cut(s)	107
BmsI	GCATC	1 cut(s)	34
BsaJI	CCNNGG	1 cut(s)	96
BsaWI	WCCGGW	2 cut(s)	68, 260
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 102
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	362
Bse3DI	GCAATG	1 cut(s)	37
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	2 cut(s)	82, 399
BseLI	CCNNNNNNNGG	2 cut(s)	68, 102
BseMI	GCAATG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	1 cut(s)	362
BseRI	GAGGAG	1 cut(s)	277
BseXI	GCAGC	4 cut(s)	99, 184, 220, 326
BshTI	ACCGGT	1 cut(s)	68
BsiSI	CCGG	2 cut(s)	69, 261
BslFI	GGGAC	1 cut(s)	394
BslI	CCNNNNNNNGG	2 cut(s)	68, 102
BsmAI	GTCTC	1 cut(s)	148
BsmBI	CGTCTC	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	394
Bsp1407I	TGTACA	1 cut(s)	461
Bsp143I	GATC	2 cut(s)	184, 292
BspACI	CCGC	2 cut(s)	47, 399
BspCNI	CTCAG	1 cut(s)	331
BspLI	GGNNCC	1 cut(s)	107
BspPI	GGATC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	37
BsrFI	RCCGGY	1 cut(s)	68
BsrGI	TGTACA	1 cut(s)	461
BsrI	ACTGG	1 cut(s)	362
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	2 cut(s)	184, 292
BssT1I	CCWWGG	1 cut(s)	96
Bst4CI	ACNGT	2 cut(s)	182, 233
BstAUI	TGTACA	1 cut(s)	461
BstDEI	CTNAG	1 cut(s)	339
BstF5I	GGATG	2 cut(s)	82, 399
BstKTI	GATC	2 cut(s)	187, 295
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	2 cut(s)	184, 292
BstNSI	RCATGY	1 cut(s)	87
BstSFI	CTRYAG	1 cut(s)	114
BstV1I	GCAGC	4 cut(s)	99, 184, 220, 326
BsuI	GTATCC	1 cut(s)	395
BtsCI	GGATG	2 cut(s)	82, 399
Cfr10I	RCCGGY	1 cut(s)	68
Csp6I	GTAC	2 cut(s)	81, 462
CspAI	ACCGGT	1 cut(s)	68
CviAII	CATG	3 cut(s)	84, 311, 375
CviJI	RGCY	4 cut(s)	119, 140, 211, 317
CviKI_1	RGCY	4 cut(s)	119, 140, 211, 317
CviQI	GTAC	2 cut(s)	81, 462
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	2 cut(s)	186, 294
DpnII	GATC	2 cut(s)	184, 292
EciI	GGCGGA	1 cut(s)	414
Eco130I	CCWWGG	1 cut(s)	96
EcoRI	GAATTC	1 cut(s)	370
EcoT14I	CCWWGG	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	96
Esp3I	CGTCTC	1 cut(s)	148
FaeI	CATG	3 cut(s)	87, 314, 378
FaqI	GGGAC	1 cut(s)	394
FatI	CATG	3 cut(s)	83, 310, 374
FauNDI	CATATG	1 cut(s)	436
Fnu4HI	GCNGC	4 cut(s)	88, 198, 209, 315
FokI	GGATG	2 cut(s)	89, 406
Fsp4HI	GCNGC	4 cut(s)	88, 198, 209, 315
FspBI	CTAG	2 cut(s)	384, 426
GluI	GCNGC	4 cut(s)	88, 198, 209, 315
HapII	CCGG	2 cut(s)	69, 261
Hin1II	CATG	3 cut(s)	87, 314, 378
HpaII	CCGG	2 cut(s)	69, 261
HphI	GGTGA	3 cut(s)	194, 290, 356
Hpy188I	TCNGA	2 cut(s)	292, 340
HpyAV	CCTTC	1 cut(s)	411
HpyCH4III	ACNGT	2 cut(s)	182, 233
HpyCH4V	TGCA	3 cut(s)	87, 314, 449
HpyF3I	CTNAG	1 cut(s)	339
Hsp92II	CATG	3 cut(s)	87, 314, 378
Kzo9I	GATC	2 cut(s)	184, 292
LmnI	GCTCC	1 cut(s)	290
LpnPI	CCDG	4 cut(s)	82, 88, 274, 343
Lsp1109I	GCAGC	4 cut(s)	99, 184, 220, 326
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	2 cut(s)	384, 426
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	2 cut(s)	186, 294
MboI	GATC	2 cut(s)	184, 292
MboII	GAAGA	1 cut(s)	362
MluCI	AATT	2 cut(s)	370, 469
MmeI	TCCRAC	2 cut(s)	274, 320
MnlI	CCTC	6 cut(s)	119, 121, 257, 268, 298, 334
MseI	TTAA	2 cut(s)	431, 472
MslI	CAYNNNNRTG	1 cut(s)	71
MspI	CCGG	2 cut(s)	69, 261
NdeI	CATATG	1 cut(s)	436
NdeII	GATC	2 cut(s)	184, 292
NlaIII	CATG	3 cut(s)	87, 314, 378
NlaIV	GGNNCC	1 cut(s)	107
NmuCI	GTSAC	1 cut(s)	278
NspI	RCATGY	1 cut(s)	87
OliI	CACNNNNGTG	1 cut(s)	71
PflMI	CCANNNNNTGG	1 cut(s)	102
PinAI	ACCGGT	1 cut(s)	68
PkrI	GCNGC	4 cut(s)	89, 199, 210, 316
PsiI	TTATAA	1 cut(s)	123
PspN4I	GGNNCC	1 cut(s)	107
PsrI	GAACNNNNNNTAC	2 cut(s)	217, 249
RsaI	GTAC	2 cut(s)	82, 463
RsaNI	GTAC	2 cut(s)	81, 462
RseI	CAYNNNNRTG	1 cut(s)	71
SaqAI	TTAA	2 cut(s)	431, 472
SatI	GCNGC	4 cut(s)	88, 198, 209, 315
Sau3AI	GATC	2 cut(s)	184, 292
SetI	ASST	4 cut(s)	102, 121, 268, 319
SfaNI	GCATC	1 cut(s)	34
SfcI	CTRYAG	1 cut(s)	114
SgrAI	CRCCGGYG	1 cut(s)	68
SmiMI	CAYNNNNRTG	1 cut(s)	71
SpeI	ACTAGT	2 cut(s)	383, 425
Sse9I	AATT	2 cut(s)	370, 469
SsiI	CCGC	2 cut(s)	47, 399
SspMI	CTAG	2 cut(s)	384, 426
StyI	CCWWGG	1 cut(s)	96
TaaI	ACNGT	2 cut(s)	182, 233
TasI	AATT	2 cut(s)	370, 469
TatI	WGTACW	1 cut(s)	461
Tru1I	TTAA	2 cut(s)	431, 472
Tru9I	TTAA	2 cut(s)	431, 472
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	4 cut(s)	87, 197, 208, 314
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	2 cut(s)	363, 363
TspGWI	ACGGA	1 cut(s)	168
Van91I	CCANNNNNTGG	1 cut(s)	102
XapI	RAATTY	1 cut(s)	370
XceI	RCATGY	1 cut(s)	87
XspI	CTAG	2 cut(s)	384, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.