Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0013633

Physical Location & Seq

Genomic Coordinates Forward (+)

7399003 .. 7401613

Gene Structure 2611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG093400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGGTTGCCACAAAATTGAACTGGCTCTTGCTTTTTTCATCTGTGCTTCCCTAGCTTGCTTCTCTTATGGTCTCCCTAGTGAGTACTCCATAGTGGGAGGTGAAACAGTGAACTTCCCAGCTGAGGAGAGAGTGGTGGAGCTCTTCAGGCTGTGGAGGGAGAAGCACAGAAAGGTGTATAACCATGTTGAGGAGCATGAGAGGAGGTTTGAGAATTTCAAGAGGAATCTCAGGTTTGTGTTGGAGAAACATGCACAGAAAAAGGCTGCAGCTATTAAGCATGATACTCAGAGAGTCGGGTTGAACAAGTTTGCTGATTTGAGCAATGAGGAGTTCAGGGCGATTTATATGCCGAAAAAGGTCCGAATGCCGATCAGCAAAAGGGACAGACTGGAGGAAACCAAAGTTGTCACCATCGATGGCTATACAGATGTCGAAGAGACAGAGACCGGTGTTTTCAATGCTGTGCTTCAGCAACCCATTAGCGTTGGTATGGATGGCTCTGCTTTGGATTTTCAATTATACACCGGAGGAATTTATGACGGTGATTGCTCCGACGATCCAAATGACATTGATCATGCCGTTCTAATAGTAGGATATGGTTCTGAAAACGGTGAAGATTACTGGATTGTAAAGAATTCATGGGGAACTAGTTGGGGGATTGAAGGATACTTTTACCTCAGAAGGAACACCGATTTGCCATATGGGGTTTGTGCAGTCAATGCCATGGCTTCATATCCTACCAAAGAGTCAGTTGCACCCTCTCCTTATCCATCTCCAACTCCTCCACCACCACCTCCTACACCTGTCTCTCCACCACCGCCACCAGTGACACCGCCACCACCACCACCACCCTCTCCTTCACCAAGCCAATGCGGAGACTTCTCCTATTGTCCAGCTGATGAGACATGTTGTTGCCTCTATGAATTCTTTGACTACTGCTTGATTTATGGTTGCTGTGAATATGAGAATGCGGTTTGCTGCACTGGAACTGAATACTGCTGTCCAAGTGACTATCCCATTTGTGATATCGAGGAAGGCCTGTGTCTTAAGAATGGCAGAGACTACTTGGGAGTAGCTGCAAAGAAGAGAAAGATTGCCAAGCACAAGTTCCCATGGACTAAAGTAGAGCAAACCGAGAAGACATACCACCCTCTACAGTGGAAGATGAACCGGTTTGCTGCAATGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

397

Amino Acids

44.91

Weight (kDa)

5.51

Isoelectric Point (pI)

55.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	49 - 112	1.5e-13	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	128 - 248	3.4e-33	Papain family cysteine protease
Granulin	PF00396	303 - 350	5.1e-07	Granulin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013633)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07700
malus_domestica	MD05G1300100.v1.1
prunus_persica	Prupe.4G062200_v2.0.a1 Prupe.4G062200_v2.0.a1 Prupe.4G062200_v2.0.a1
pyrus_communis	pycom05g27800 pycom05g27830
rosa_chinensis	RchiOBHm_Chr5g0010931
rosa_laevigata	RLG00000031798
rosa_multiflora	Rmu_sc0001895.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065440
rosa_rugosa	Rorug04G0453800
rosa_samantha	Rh5AG086400 Rh5BG080900 Rh5CG093400 Rh5DG081000
rosa_wichuraiana	Rw0G017430 Rw0G017880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	821, 836, 876, 974
AclWI	GGATC	1 cut(s)	554
AcsI	RAATTY	4 cut(s)	214, 534, 637, 926
AcuI	CTGAAG	2 cut(s)	130, 455
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	2 cut(s)	124, 190
AflII	CTTAAG	1 cut(s)	1049
AflIII	ACRYGT	1 cut(s)	908
AgeI	ACCGGT	2 cut(s)	449, 1173
AgsI	TTSAA	6 cut(s)	20, 220, 304, 460, 518, 665
AhlI	ACTAGT	1 cut(s)	650
AjuI	GAANNNNNNNTTGG	2 cut(s)	1094, 1126
AluBI	AGCT	6 cut(s)	56, 122, 142, 272, 899, 1079
AluI	AGCT	6 cut(s)	56, 122, 142, 272, 899, 1079
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	7 cut(s)	77, 434, 440, 814, 873, 899, 1056
AlwI	GGATC	1 cut(s)	554
AoxI	GGCC	1 cut(s)	1039
ApeKI	GCWGC	5 cut(s)	266, 269, 981, 1079, 1181
ApoI	RAATTY	4 cut(s)	214, 534, 637, 926
AsiGI	ACCGGT	2 cut(s)	449, 1173
AspLEI	GCGC	1 cut(s)	1191
AspS9I	GGNCC	1 cut(s)	361
AsuHPI	GGTGA	5 cut(s)	113, 403, 557, 626, 855
AvaII	GGWCC	1 cut(s)	361
BanII	GRGCYC	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	1148
Bbv12I	GWGCWC	1 cut(s)	144
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	5 cut(s)	253, 281, 968, 1066, 1168
BccI	CCATC	4 cut(s)	413, 422, 491, 781
BceAI	ACGGC	1 cut(s)	566
BcgI	CGANNNNNNTGC	2 cut(s)	331, 365
BciVI	GTATCC	1 cut(s)	662
BclI	TGATCA	1 cut(s)	574
BcoDI	GTCTC	7 cut(s)	77, 434, 440, 814, 873, 899, 1056
BcuI	ACTAGT	1 cut(s)	650
BfaI	CTAG	3 cut(s)	53, 78, 651
BfmI	CTRYAG	2 cut(s)	267, 1157
BfrI	CTTAAG	1 cut(s)	1049
BfuI	GTATCC	1 cut(s)	662
BisI	GCNGC	5 cut(s)	267, 270, 982, 1080, 1182
BlsI	GCNGC	5 cut(s)	268, 271, 983, 1081, 1183
BmcAI	AGTACT	1 cut(s)	86
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	361
BpiI	GAAGAC	1 cut(s)	1148
BpmI	CTGGAG	1 cut(s)	413
Bpu10I	CCTNAGC	1 cut(s)	123
Bsa29I	ATCGAT	1 cut(s)	417
BsaI	GGTCTC	2 cut(s)	77, 440
BsaJI	CCNNGG	2 cut(s)	726, 1115
BsaWI	WCCGGW	3 cut(s)	449, 527, 1173
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 190
Bse118I	RCCGGY	2 cut(s)	449, 1173
Bse1I	ACTGG	5 cut(s)	27, 396, 629, 827, 991
Bse3DI	GCAATG	2 cut(s)	331, 1191
BseCI	ATCGAT	1 cut(s)	417
BseDI	CCNNGG	2 cut(s)	726, 1115
BseGI	GGATG	1 cut(s)	502
BseLI	CCNNNNNNNGG	2 cut(s)	124, 190
BseMI	GCAATG	2 cut(s)	331, 1191
BseMII	CTCAG	4 cut(s)	114, 244, 302, 694
BseNI	ACTGG	5 cut(s)	27, 396, 629, 827, 991
BseRI	GAGGAG	5 cut(s)	140, 206, 217, 344, 774
BseXI	GCAGC	5 cut(s)	253, 281, 968, 1066, 1168
BseYI	CCCAGC	1 cut(s)	118
BsgI	GTGCAG	2 cut(s)	735, 967
BshFI	GGCC	1 cut(s)	1041
BshTI	ACCGGT	2 cut(s)	449, 1173
BshVI	ATCGAT	1 cut(s)	417
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	3 cut(s)	450, 528, 1174
BslFI	GGGAC	1 cut(s)	398
BslI	CCNNNNNNNGG	2 cut(s)	124, 190
BsmAI	GTCTC	7 cut(s)	77, 434, 440, 814, 873, 899, 1056
BsmFI	GGGAC	1 cut(s)	398
BsmI	GAATGC	2 cut(s)	372, 976
BsnI	GGCC	1 cut(s)	1041
Bso31I	GGTCTC	2 cut(s)	77, 440
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	3 cut(s)	372, 559, 574
Bsp19I	CCATGG	2 cut(s)	726, 1115
BspACI	CCGC	4 cut(s)	821, 836, 876, 974
BspANI	GGCC	1 cut(s)	1041
BspCNI	CTCAG	4 cut(s)	115, 243, 301, 693
BspDI	ATCGAT	1 cut(s)	417
BspMAI	CTGCAG	1 cut(s)	271
BspPI	GGATC	1 cut(s)	554
BspQI	GCTCTTC	1 cut(s)	149
BspTI	CTTAAG	1 cut(s)	1049
BspTNI	GGTCTC	2 cut(s)	77, 440
BsrDI	GCAATG	2 cut(s)	331, 1191
BsrFI	RCCGGY	2 cut(s)	449, 1173
BsrI	ACTGG	5 cut(s)	27, 396, 629, 827, 991
BssAI	RCCGGY	2 cut(s)	449, 1173
BssECI	CCNNGG	2 cut(s)	726, 1115
BssMI	GATC	3 cut(s)	372, 559, 574
BssT1I	CCWWGG	2 cut(s)	726, 1115
Bst4CI	ACNGT	4 cut(s)	109, 545, 614, 1161
Bst6I	CTCTTC	3 cut(s)	149, 432, 1082
BstAFI	CTTAAG	1 cut(s)	1049
BstAPI	GCANNNNNTGC	1 cut(s)	722
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	4 cut(s)	123, 230, 288, 680
BstDSI	CCRYGG	2 cut(s)	726, 1115
BstF5I	GGATG	1 cut(s)	502
BstHHI	GCGC	1 cut(s)	1191
BstKTI	GATC	3 cut(s)	375, 562, 577
BstMAI	GTCTC	7 cut(s)	77, 434, 440, 814, 873, 899, 1056
BstMBI	GATC	3 cut(s)	372, 559, 574
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 148, 722
BstNSI	RCATGY	2 cut(s)	254, 912
BstSFI	CTRYAG	2 cut(s)	267, 1157
BstV1I	GCAGC	5 cut(s)	253, 281, 968, 1066, 1168
BstV2I	GAAGAC	1 cut(s)	1148
Bsu15I	ATCGAT	1 cut(s)	417
BsuI	GTATCC	1 cut(s)	662
BsuRI	GGCC	1 cut(s)	1041
BsuTUI	ATCGAT	1 cut(s)	417
BtgI	CCRYGG	2 cut(s)	726, 1115
BtsCI	GGATG	1 cut(s)	502
BtsIMutI	CAGTG	4 cut(s)	114, 834, 984, 1166
Cac8I	GCNNGC	1 cut(s)	58
CfoI	GCGC	1 cut(s)	1191
Cfr10I	RCCGGY	2 cut(s)	449, 1173
Cfr13I	GGNCC	1 cut(s)	361
ClaI	ATCGAT	1 cut(s)	417
Csp6I	GTAC	1 cut(s)	85
CspAI	ACCGGT	2 cut(s)	449, 1173
CviAII	CATG	9 cut(s)	185, 197, 251, 281, 578, 642, 727, 909, 1116
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	4 cut(s)	123, 230, 288, 680
DpnI	GATC	3 cut(s)	374, 561, 576
DpnII	GATC	3 cut(s)	372, 559, 574
Eam1104I	CTCTTC	3 cut(s)	149, 432, 1082
EarI	CTCTTC	3 cut(s)	149, 432, 1082
Ecl136II	GAGCTC	1 cut(s)	142
Eco130I	CCWWGG	2 cut(s)	726, 1115
Eco147I	AGGCCT	1 cut(s)	1041
Eco24I	GRGCYC	1 cut(s)	144
Eco31I	GGTCTC	2 cut(s)	77, 440
Eco32I	GATATC	1 cut(s)	1030
Eco47I	GGWCC	1 cut(s)	361
Eco53kI	GAGCTC	1 cut(s)	142
Eco57I	CTGAAG	2 cut(s)	130, 455
EcoICRI	GAGCTC	1 cut(s)	142
EcoRI	GAATTC	2 cut(s)	637, 926
EcoRV	GATATC	1 cut(s)	1030
EcoT14I	CCWWGG	2 cut(s)	726, 1115
EcoT38I	GRGCYC	1 cut(s)	144
ErhI	CCWWGG	2 cut(s)	726, 1115
FaeI	CATG	9 cut(s)	188, 200, 254, 284, 581, 645, 730, 912, 1119
FaqI	GGGAC	1 cut(s)	398
FatI	CATG	9 cut(s)	184, 196, 250, 280, 577, 641, 726, 908, 1115
FauNDI	CATATG	1 cut(s)	703
FbaI	TGATCA	1 cut(s)	574
Fnu4HI	GCNGC	5 cut(s)	267, 270, 982, 1080, 1182
FokI	GGATG	1 cut(s)	509
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	5 cut(s)	267, 270, 982, 1080, 1182
FspBI	CTAG	3 cut(s)	53, 78, 651
GlaI	GCGC	1 cut(s)	1190
GluI	GCNGC	5 cut(s)	267, 270, 982, 1080, 1182
GsaI	CCCAGC	1 cut(s)	122
GsuI	CTGGAG	1 cut(s)	413
HaeIII	GGCC	1 cut(s)	1041
HapII	CCGG	3 cut(s)	450, 528, 1174
HhaI	GCGC	1 cut(s)	1191
Hin1II	CATG	9 cut(s)	188, 200, 254, 284, 581, 645, 730, 912, 1119
Hin6I	GCGC	1 cut(s)	1189
HinP1I	GCGC	1 cut(s)	1189
HinfI	GANTC	3 cut(s)	226, 294, 749
HpaII	CCGG	3 cut(s)	450, 528, 1174
HphI	GGTGA	5 cut(s)	113, 403, 557, 626, 855
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	5 cut(s)	291, 365, 556, 607, 683
Hpy188III	TCNNGA	1 cut(s)	220
Hpy8I	GTNNAC	1 cut(s)	112
Hpy99I	CGWCG	1 cut(s)	560
HpyAV	CCTTC	4 cut(s)	659, 678, 870, 1031
HpyCH4III	ACNGT	4 cut(s)	109, 545, 614, 1161
HpyCH4V	TGCA	7 cut(s)	254, 269, 716, 758, 984, 1082, 1184
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 148, 722
HpyF3I	CTNAG	4 cut(s)	123, 230, 288, 680
Hsp92II	CATG	9 cut(s)	188, 200, 254, 284, 581, 645, 730, 912, 1119
HspAI	GCGC	1 cut(s)	1189
Ksp22I	TGATCA	1 cut(s)	574
Kzo9I	GATC	3 cut(s)	372, 559, 574
LguI	GCTCTTC	1 cut(s)	149
LmnI	GCTCC	3 cut(s)	139, 193, 557
Lsp1109I	GCAGC	5 cut(s)	253, 281, 968, 1066, 1168
MaeI	CTAG	3 cut(s)	53, 78, 651
MaeIII	GTNAC	3 cut(s)	409, 829, 1010
MalI	GATC	3 cut(s)	374, 561, 576
MboI	GATC	3 cut(s)	372, 559, 574
MboII	GAAGA	6 cut(s)	136, 449, 629, 1099, 1153, 1177
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	6 cut(s)	15, 214, 518, 534, 637, 926
MlyI	GAGTC	2 cut(s)	303, 758
MmeI	TCCRAC	3 cut(s)	222, 579, 803
MseI	TTAA	2 cut(s)	276, 1050
MspA1I	CMGCKG	2 cut(s)	122, 899
MspCI	CTTAAG	1 cut(s)	1049
MspI	CCGG	3 cut(s)	450, 528, 1174
Mva1269I	GAATGC	2 cut(s)	372, 976
MwoI	GCNNNNNNNGC	3 cut(s)	53, 148, 722
NcoI	CCATGG	2 cut(s)	726, 1115
NdeI	CATATG	1 cut(s)	703
NdeII	GATC	3 cut(s)	372, 559, 574
NlaIII	CATG	9 cut(s)	188, 200, 254, 284, 581, 645, 730, 912, 1119
NmuCI	GTSAC	3 cut(s)	409, 829, 1010
NspI	RCATGY	2 cut(s)	254, 912
PceI	AGGCCT	1 cut(s)	1041
PciI	ACATGT	1 cut(s)	908
PciSI	GCTCTTC	1 cut(s)	149
PctI	GAATGC	2 cut(s)	372, 976
PfeI	GAWTC	1 cut(s)	226
PinAI	ACCGGT	2 cut(s)	449, 1173
PkrI	GCNGC	5 cut(s)	268, 271, 983, 1081, 1183
PleI	GAGTC	2 cut(s)	302, 757
PpsI	GAGTC	2 cut(s)	302, 757
PscI	ACATGT	1 cut(s)	908
Psp124BI	GAGCTC	1 cut(s)	144
PspFI	CCCAGC	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	361
PstI	CTGCAG	1 cut(s)	271
PvuII	CAGCTG	2 cut(s)	122, 899
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SacI	GAGCTC	1 cut(s)	144
SapI	GCTCTTC	1 cut(s)	149
SaqAI	TTAA	2 cut(s)	276, 1050
SatI	GCNGC	5 cut(s)	267, 270, 982, 1080, 1182
Sau3AI	GATC	3 cut(s)	372, 559, 574
Sau96I	GGNCC	1 cut(s)	361
ScaI	AGTACT	1 cut(s)	86
SchI	GAGTC	2 cut(s)	303, 758
SduI	GDGCHC	1 cut(s)	144
SfcI	CTRYAG	2 cut(s)	267, 1157
SinI	GGWCC	1 cut(s)	361
SmlI	CTYRAG	1 cut(s)	1049
SmoI	CTYRAG	1 cut(s)	1049
SpeI	ACTAGT	1 cut(s)	650
Sse9I	AATT	6 cut(s)	15, 214, 518, 534, 637, 926
SseBI	AGGCCT	1 cut(s)	1041
SsiI	CCGC	4 cut(s)	821, 836, 876, 974
SspMI	CTAG	3 cut(s)	53, 78, 651
SstI	GAGCTC	1 cut(s)	144
StuI	AGGCCT	1 cut(s)	1041
StyI	CCWWGG	2 cut(s)	726, 1115
TaaI	ACNGT	4 cut(s)	109, 545, 614, 1161
TaqI	TCGA	3 cut(s)	417, 435, 1032
TasI	AATT	6 cut(s)	15, 214, 518, 534, 637, 926
TatI	WGTACW	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	2 cut(s)	276, 1050
Tru9I	TTAA	2 cut(s)	276, 1050
TscAI	CASTG	4 cut(s)	114, 834, 991, 1166
TseFI	GTSAC	3 cut(s)	409, 829, 1010
TseI	GCWGC	5 cut(s)	266, 269, 981, 1079, 1181
Tsp45I	GTSAC	3 cut(s)	409, 829, 1010
TspDTI	ATGAA	5 cut(s)	28, 630, 723, 939, 1184
TspRI	CASTG	4 cut(s)	114, 834, 991, 1166
Vha464I	CTTAAG	1 cut(s)	1049
VpaK11BI	GGWCC	1 cut(s)	361
XapI	RAATTY	4 cut(s)	214, 534, 637, 926
XceI	RCATGY	2 cut(s)	254, 912
XspI	CTAG	3 cut(s)	53, 78, 651
ZrmI	AGTACT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.