MD05G1300100.v1.1

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
43343086 .. 43346588
3503 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1300100.v1.1.491

Sequence Viewer

Length: 1536 bp
ATGGGTTCCCACAAAATTCAATTGGGTTTGGCTCTTTTAATCTGGGCATCACTGGCGTGCCTTTCTTCTAGTCTCCCAAGTGAATACTCCATCGTTGGGCAAGAAATAGTGGAACACTTTCCTGCAGAGGAGAGAGTTGTGGAGCTTTTCAGGCTGTGGAAGCAGAAGCACAGGAAGGTGTATAGGCATGCTGGAGAGCATGAGAGGAGGTTTGAGCATTTCAAGAAGAATCTCAAGTTTGTGTTGGAGAAGAATGCAAAGAAGAGGGATGCAAAGAATGCCCATCGTAGTCAGAGGGTTGGGTTGAATGGGTTTGCTGACATGAGTAATGAGGAGTTCAGGGAGACTTACTTGTCTAAGAAGGTGCAAATGCCCCTTCTCAAAAGGGAGAATCTTAACCTGGTGAAGAAAATGGGGGGCAAACCAGTGAAGTCATGTGATGCTCCTTCTTCTTTCGATTGGAGGAAGAAGGGAGTTGTGACTGGTATCAAGGACCAAGGCAGTTGTGGAAGTTGTTGGGCATTCTCTAGCACTGGAGCTGTTGAAGGAATCAATGCAATAGTCACCGGAGACCTCATTAGCCTTTCAGAACAAGAGCTTGTGGATTGTGACAGTACTAACTATGGATGTGAGGGAGGCTACATGGACTACGCTTTTGAATGGGTTATTAGCAATGGTGGTATTGATACGGAAACTGATTATCCATACACCGGTGTGGATGGTCAATGCAGCACCACCAAGGAGGAAAACAAAGCTGTCACCATTGACGGATATGAAGATGTGGGAGAAACAGACGGCGATCTTTTATGTGCTTCTGTTCAGCAGCCCATTAGTGTTGGTATGGACGGTTCTGCTTGGGATTTCCAACTTTACACCGGAGGTATCTATGACGGTGACTGCTCCTCTGATCCAGACGACATTGACCATGCGGTTCTTATAGTGGGATATGGTTCTGAAGGTGATGAAGATTACTGGATTGTAAAGAATTCATGGGGGACTAGTTGGGGGATGGATGGATACATTTACATTAGAAGGAACACTAGTTTAACATATGGGGTTTGTGCAATCAACGCCATGGCTTCATATCCTACCAAAGAGTCATCTGCACCTTCCCCAGCCTCTCCACCCCCACCTCCTGCGCCGCCGTCACCACCGCCACCACCACCTCCACCACCATCACCACCACCACCACCACCATCTCCGTCACCAAGTGATTGTGGGGACTTCTCCTACTGTCCATCTGATCAAACATGCTGTTGCCTTTATGAATTTTATGGCTTCTGCCTCATCTATGGTTGCTGCGACTATCAGAATGCGGTTTGCTGCACTGGAACTGAATACTGCTGCCCGAGTGATTACCCCATTTGTGATGTCTCTGAGGGCCTCTGTCTCAAGAGTTACGGAGATTACTTGGGAGTATCTGCAAAGAAGAGAAAAATGGCCCATCACAAGCTCCCATGGACTAAGGAGGAGCAAACAGAGAAGACATACCAACCTCTGCAGTGGAAGATGAACCGGTTTGCTGCAATGCGCTAA

Protein Analysis

512

Amino Acids

56.55

Weight (kDa)

5.13

Isoelectric Point (pI)

50.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 50 - 113 1.4e-15 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 149 - 364 9.3e-79 Papain family cysteine protease
Granulin PF00396 417 - 464 1.1e-06 Granulin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013633)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 352
AciI CCGC 4 cut(s) 929, 1142, 1154, 1316
AclWI GGATC 1 cut(s) 902
AcsI RAATTY 3 cut(s) 15, 985, 1268
AcuI CTGAAG 1 cut(s) 975
AdeI CACNNNGTG 1 cut(s) 1211
AfaI GTAC 1 cut(s) 616
AfiI CCNNNNNNNGG 2 cut(s) 96, 710
AgeI ACCGGT 2 cut(s) 710, 1515
AgsI TTSAA 5 cut(s) 20, 223, 307, 545, 659
AhlI ACTAGT 2 cut(s) 998, 1040
AjnI CCWGG 1 cut(s) 399
AleI CACNNNNGTG 2 cut(s) 55, 713
AluBI AGCT 5 cut(s) 145, 539, 598, 755, 1453
AluI AGCT 5 cut(s) 145, 539, 598, 755, 1453
Alw26I GTCTC 5 cut(s) 77, 338, 564, 1378, 1394
AlwI GGATC 1 cut(s) 902
Ama87I CYCGRG 1 cut(s) 1348
AoxI GGCC 2 cut(s) 1381, 1440
ApeKI GCWGC 6 cut(s) 729, 823, 1299, 1323, 1344, 1523
ApoI RAATTY 3 cut(s) 15, 985, 1268
ArsI GACNNNNNNTTYG 2 cut(s) 638, 670
AsiGI ACCGGT 2 cut(s) 710, 1515
Asp700I GAANNNNTTC 1 cut(s) 117
AspLEI GCGC 2 cut(s) 1141, 1533
AspS9I GGNCC 3 cut(s) 493, 1381, 1441
AsuHPI GGTGA 8 cut(s) 415, 556, 751, 905, 971, 1140, 1170, 1197
AvaI CYCGRG 1 cut(s) 1348
AvaII GGWCC 1 cut(s) 493
BbsI GAAGAC 1 cut(s) 1490
BbvI GCAGC 6 cut(s) 741, 835, 1286, 1310, 1331, 1510
BccI CCATC 9 cut(s) 98, 291, 713, 1003, 1007, 1183, 1204, 1246, 1452
BceAI ACGGC 2 cut(s) 811, 1129
BciT130I CCWGG 1 cut(s) 401
BciVI GTATCC 1 cut(s) 1010
BclI TGATCA 1 cut(s) 1243
BcoDI GTCTC 5 cut(s) 77, 338, 564, 1378, 1394
BcuI ACTAGT 2 cut(s) 998, 1040
BfaI CTAG 4 cut(s) 69, 528, 999, 1041
BfmI CTRYAG 2 cut(s) 123, 1499
BfuI GTATCC 1 cut(s) 1010
BisI GCNGC 7 cut(s) 730, 824, 1142, 1300, 1324, 1345, 1524
BlsI GCNGC 7 cut(s) 731, 825, 1143, 1301, 1325, 1346, 1525
BmcAI AGTACT 1 cut(s) 616
Bme1390I CCNGG 1 cut(s) 401
Bme18I GGWCC 1 cut(s) 493
BmeT110I CYCGRG 1 cut(s) 1348
BmgT120I GGNCC 3 cut(s) 493, 1381, 1441
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 1 cut(s) 401
BmsI GCATC 3 cut(s) 56, 259, 430
BpiI GAAGAC 1 cut(s) 1490
BpmI CTGGAG 2 cut(s) 213, 555
BpuEI CTTGAG 2 cut(s) 218, 1376
BsaI GGTCTC 1 cut(s) 564
BsaJI CCNNGG 4 cut(s) 496, 738, 1074, 1457
BsaWI WCCGGW 4 cut(s) 566, 710, 875, 1515
Bsc4I CCNNNNNNNGG 2 cut(s) 96, 710
Bse118I RCCGGY 2 cut(s) 710, 1515
Bse1I ACTGG 6 cut(s) 57, 425, 487, 538, 977, 1333
Bse3DI GCAATG 2 cut(s) 679, 1533
BseBI CCWGG 1 cut(s) 401
BseDI CCNNGG 4 cut(s) 496, 738, 1074, 1457
BseGI GGATG 5 cut(s) 274, 632, 724, 1014, 1018
BseLI CCNNNNNNNGG 2 cut(s) 96, 710
BseMI GCAATG 2 cut(s) 679, 1533
BseMII CTCAG 1 cut(s) 1368
BseNI ACTGG 6 cut(s) 57, 425, 487, 538, 977, 1333
BseRI GAGGAG 5 cut(s) 143, 220, 347, 892, 1484
BseXI GCAGC 6 cut(s) 741, 835, 1286, 1310, 1331, 1510
BseYI CCCAGC 1 cut(s) 1114
BsgI GTGCAG 2 cut(s) 1089, 1309
BshFI GGCC 2 cut(s) 1383, 1442
BshTI ACCGGT 2 cut(s) 710, 1515
BsiHKCI CYCGRG 1 cut(s) 1348
BsiSI CCGG 4 cut(s) 567, 711, 876, 1516
BslFI GGGAC 2 cut(s) 1009, 1235
BslI CCNNNNNNNGG 2 cut(s) 96, 710
BsmAI GTCTC 5 cut(s) 77, 338, 564, 1378, 1394
BsmFI GGGAC 2 cut(s) 1009, 1235
BsmI GAATGC 4 cut(s) 259, 283, 521, 1318
BsnI GGCC 2 cut(s) 1383, 1442
Bso31I GGTCTC 1 cut(s) 564
BsoBI CYCGRG 1 cut(s) 1348
Bsp143I GATC 3 cut(s) 799, 907, 1243
Bsp19I CCATGG 2 cut(s) 1074, 1457
BspACI CCGC 4 cut(s) 929, 1142, 1154, 1316
BspANI GGCC 2 cut(s) 1383, 1442
BspCNI CTCAG 1 cut(s) 1369
BspLI GGNNCC 1 cut(s) 7
BspMAI CTGCAG 2 cut(s) 127, 1503
BspPI GGATC 1 cut(s) 902
BspTNI GGTCTC 1 cut(s) 564
BsrDI GCAATG 2 cut(s) 679, 1533
BsrFI RCCGGY 2 cut(s) 710, 1515
BsrI ACTGG 6 cut(s) 57, 425, 487, 538, 977, 1333
BssAI RCCGGY 2 cut(s) 710, 1515
BssECI CCNNGG 4 cut(s) 496, 738, 1074, 1457
BssMI GATC 3 cut(s) 799, 907, 1243
BssT1I CCWWGG 4 cut(s) 496, 738, 1074, 1457
Bst2UI CCWGG 1 cut(s) 401
Bst4CI ACNGT 4 cut(s) 614, 848, 893, 1235
Bst6I CTCTTC 2 cut(s) 257, 1424
BstAPI GCANNNNNTGC 1 cut(s) 278
BstC8I GCNNGC 2 cut(s) 58, 189
BstDEI CTNAG 3 cut(s) 357, 1377, 1464
BstDSI CCRYGG 2 cut(s) 1074, 1457
BstF5I GGATG 5 cut(s) 274, 632, 724, 1014, 1018
BstHHI GCGC 2 cut(s) 1141, 1533
BstKTI GATC 3 cut(s) 802, 910, 1246
BstMAI GTCTC 5 cut(s) 77, 338, 564, 1378, 1394
BstMBI GATC 3 cut(s) 799, 907, 1243
BstMWI GCNNNNNNNGC 5 cut(s) 53, 151, 160, 278, 1070
BstNI CCWGG 1 cut(s) 401
BstNSI RCATGY 2 cut(s) 191, 1254
BstSCI CCNGG 1 cut(s) 399
BstSFI CTRYAG 2 cut(s) 123, 1499
BstV1I GCAGC 6 cut(s) 741, 835, 1286, 1310, 1331, 1510
BstV2I GAAGAC 1 cut(s) 1490
BsuI GTATCC 1 cut(s) 1010
BsuRI GGCC 2 cut(s) 1383, 1442
BtgI CCRYGG 2 cut(s) 1074, 1457
BtsCI GGATG 5 cut(s) 274, 632, 724, 1014, 1018
BtsI GCAGTG 1 cut(s) 1508
BtsIMutI CAGTG 5 cut(s) 50, 432, 531, 1326, 1508
Cac8I GCNNGC 2 cut(s) 58, 189
CfoI GCGC 2 cut(s) 1141, 1533
Cfr10I RCCGGY 2 cut(s) 710, 1515
Cfr13I GGNCC 3 cut(s) 493, 1381, 1441
CsiI ACCWGGT 1 cut(s) 399
Csp6I GTAC 1 cut(s) 615
CspAI ACCGGT 2 cut(s) 710, 1515
CviQI GTAC 1 cut(s) 615
DdeI CTNAG 3 cut(s) 357, 1377, 1464
DpnI GATC 3 cut(s) 801, 909, 1245
DpnII GATC 3 cut(s) 799, 907, 1243
DraIII CACNNNGTG 1 cut(s) 1211
DrdI GACNNNNNNGTC 1 cut(s) 352
DseDI GACNNNNNNGTC 1 cut(s) 352
Eam1104I CTCTTC 2 cut(s) 257, 1424
EarI CTCTTC 2 cut(s) 257, 1424
Eco130I CCWWGG 4 cut(s) 496, 738, 1074, 1457
Eco31I GGTCTC 1 cut(s) 564
Eco47I GGWCC 1 cut(s) 493
Eco57I CTGAAG 1 cut(s) 975
Eco88I CYCGRG 1 cut(s) 1348
EcoO109I RGGNCCY 1 cut(s) 1381
EcoRI GAATTC 1 cut(s) 985
EcoRII CCWGG 1 cut(s) 399
EcoT14I CCWWGG 4 cut(s) 496, 738, 1074, 1457
ErhI CCWWGG 4 cut(s) 496, 738, 1074, 1457
FaqI GGGAC 2 cut(s) 1009, 1235
FauNDI CATATG 1 cut(s) 1051
FbaI TGATCA 1 cut(s) 1243
Fnu4HI GCNGC 7 cut(s) 730, 824, 1142, 1300, 1324, 1345, 1524
FokI GGATG 5 cut(s) 281, 639, 731, 1021, 1025
Fsp4HI GCNGC 7 cut(s) 730, 824, 1142, 1300, 1324, 1345, 1524
FspBI CTAG 4 cut(s) 69, 528, 999, 1041
GlaI GCGC 2 cut(s) 1140, 1532
GluI GCNGC 7 cut(s) 730, 824, 1142, 1300, 1324, 1345, 1524
GsaI CCCAGC 1 cut(s) 1118
GsuI CTGGAG 2 cut(s) 213, 555
HaeIII GGCC 2 cut(s) 1383, 1442
HapII CCGG 4 cut(s) 567, 711, 876, 1516
HhaI GCGC 2 cut(s) 1141, 1533
Hin6I GCGC 2 cut(s) 1139, 1531
HinP1I GCGC 2 cut(s) 1139, 1531
HinfI GANTC 4 cut(s) 229, 391, 549, 1097
HpaII CCGG 4 cut(s) 567, 711, 876, 1516
HphI GGTGA 8 cut(s) 415, 556, 751, 905, 971, 1140, 1170, 1197
Hpy188I TCNGA 7 cut(s) 294, 589, 907, 955, 1243, 1311, 1378
Hpy188III TCNNGA 3 cut(s) 223, 911, 1393
HpyAV CCTTC 9 cut(s) 169, 355, 386, 456, 463, 539, 950, 1026, 1119
HpyCH4III ACNGT 4 cut(s) 614, 848, 893, 1235
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 151, 160, 278, 1070
HpyF3I CTNAG 3 cut(s) 357, 1377, 1464
HspAI GCGC 2 cut(s) 1139, 1531
Ksp22I TGATCA 1 cut(s) 1243
Kzo9I GATC 3 cut(s) 799, 907, 1243
LmnI GCTCC 6 cut(s) 142, 448, 536, 905, 1458, 1471
Lsp1109I GCAGC 6 cut(s) 741, 835, 1286, 1310, 1331, 1510
LweI GCATC 3 cut(s) 56, 259, 430
MabI ACCWGGT 1 cut(s) 399
MaeI CTAG 4 cut(s) 69, 528, 999, 1041
MaeIII GTNAC 8 cut(s) 478, 562, 608, 757, 893, 1146, 1203, 1397
MalI GATC 3 cut(s) 801, 909, 1245
MboI GATC 3 cut(s) 799, 907, 1243
MfeI CAATTG 1 cut(s) 20
MluCI AATT 4 cut(s) 15, 20, 985, 1268
MlyI GAGTC 1 cut(s) 1106
MmeI TCCRAC 2 cut(s) 225, 889
MroXI GAANNNNTTC 1 cut(s) 117
MseI TTAA 3 cut(s) 38, 396, 1046
MslI CAYNNNNRTG 2 cut(s) 55, 713
MspI CCGG 4 cut(s) 567, 711, 876, 1516
MspR9I CCNGG 1 cut(s) 401
MunI CAATTG 1 cut(s) 20
Mva1269I GAATGC 4 cut(s) 259, 283, 521, 1318
MvaI CCWGG 1 cut(s) 401
MwoI GCNNNNNNNGC 5 cut(s) 53, 151, 160, 278, 1070
NcoI CCATGG 2 cut(s) 1074, 1457
NdeI CATATG 1 cut(s) 1051
NdeII GATC 3 cut(s) 799, 907, 1243
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 7 cut(s) 478, 562, 608, 757, 893, 1146, 1203
NspI RCATGY 2 cut(s) 191, 1254
OliI CACNNNNGTG 2 cut(s) 55, 713
PaeI GCATGC 1 cut(s) 191
PctI GAATGC 4 cut(s) 259, 283, 521, 1318
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 3 cut(s) 229, 391, 549
PinAI ACCGGT 2 cut(s) 710, 1515
PkrI GCNGC 7 cut(s) 731, 825, 1143, 1301, 1325, 1346, 1525
PleI GAGTC 1 cut(s) 1105
PpsI GAGTC 1 cut(s) 1105
Psp6I CCWGG 1 cut(s) 399
PspFI CCCAGC 1 cut(s) 1114
PspGI CCWGG 1 cut(s) 399
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 3 cut(s) 493, 1381, 1441
PsrI GAACNNNNNNTAC 2 cut(s) 832, 864
PstI CTGCAG 2 cut(s) 127, 1503
RsaI GTAC 1 cut(s) 616
RsaNI GTAC 1 cut(s) 615
RseI CAYNNNNRTG 2 cut(s) 55, 713
SaqAI TTAA 3 cut(s) 38, 396, 1046
SatI GCNGC 7 cut(s) 730, 824, 1142, 1300, 1324, 1345, 1524
Sau3AI GATC 3 cut(s) 799, 907, 1243
Sau96I GGNCC 3 cut(s) 493, 1381, 1441
ScaI AGTACT 1 cut(s) 616
SchI GAGTC 1 cut(s) 1106
ScrFI CCNGG 1 cut(s) 401
SexAI ACCWGGT 1 cut(s) 399
SfaNI GCATC 3 cut(s) 56, 259, 430
SfcI CTRYAG 2 cut(s) 123, 1499
SgrAI CRCCGGYG 1 cut(s) 710
SinI GGWCC 1 cut(s) 493
SmiMI CAYNNNNRTG 2 cut(s) 55, 713
SmlI CTYRAG 2 cut(s) 233, 1391
SmoI CTYRAG 2 cut(s) 233, 1391
SpeI ACTAGT 2 cut(s) 998, 1040
SphI GCATGC 1 cut(s) 191
Sse9I AATT 4 cut(s) 15, 20, 985, 1268
SsiI CCGC 4 cut(s) 929, 1142, 1154, 1316
SspMI CTAG 4 cut(s) 69, 528, 999, 1041
StyD4I CCNGG 1 cut(s) 399
StyI CCWWGG 4 cut(s) 496, 738, 1074, 1457
TaaI ACNGT 4 cut(s) 614, 848, 893, 1235
TaqI TCGA 1 cut(s) 456
TasI AATT 4 cut(s) 15, 20, 985, 1268
TatI WGTACW 1 cut(s) 614
TauI GCSGC 1 cut(s) 1144
TfiI GAWTC 3 cut(s) 229, 391, 549
Tru1I TTAA 3 cut(s) 38, 396, 1046
Tru9I TTAA 3 cut(s) 38, 396, 1046
TscAI CASTG 5 cut(s) 57, 432, 538, 1333, 1508
TseFI GTSAC 7 cut(s) 478, 562, 608, 757, 893, 1146, 1203
TseI GCWGC 6 cut(s) 729, 823, 1299, 1323, 1344, 1523
Tsp45I GTSAC 7 cut(s) 478, 562, 608, 757, 893, 1146, 1203
TspDTI ATGAA 6 cut(s) 789, 978, 978, 1071, 1281, 1526
TspGWI ACGGA 4 cut(s) 704, 783, 1191, 1416
TspRI CASTG 5 cut(s) 57, 432, 538, 1333, 1508
VpaK11BI GGWCC 1 cut(s) 493
XapI RAATTY 3 cut(s) 15, 985, 1268
XceI RCATGY 2 cut(s) 191, 1254
XcmI CCANNNNNNNNNTGG 1 cut(s) 503
XmnI GAANNNNTTC 1 cut(s) 117
XspI CTAG 4 cut(s) 69, 528, 999, 1041
ZrmI AGTACT 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.