Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0013633

Physical Location & Seq

Genomic Coordinates Reverse (-)

28706403 .. 28708429

Gene Structure 2027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g27830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGGTTCCCACAAAATTCAATTGGGTTTGGCTCTTTTCATCTGGGCATCACTGGCGTGCCTTTCTTCTAGTCTCCCAAGTGAATACTCCATTGTTGGGCAAGAAATAGTGGAACACTTTCCTGCAGAGGAGAGAGTTGTGGAGCTTTTCAGGCTGTGGAAGCAGAAGCACAGGAAGGTGTATAGGCATGCTGGAGAGCATGAGAGGAGGTTTGAGCATTTCAAGAAGAATCTCAAGTTTGTGTTGGAGAAGAATGCAAGGAAGAGGGATGCAAAAAATGCCCATCGTAGTCAGAGGGTTGGGTTGAATGGGTTTGCTGACATGAGTAATGAGGAGTTCAGGAAGACTTACTTGTCCAAGAAGGTGCAAATGCCCCTTCTCAAAAGGGAGAATCTTAACCTGGTGAAGAAAATGGGGGGCAAACCAGTGAAGTCATGTGATGCTCCTTCTTCTTTCGATTGGAGGAAGAAGGGAGTTGTGACTGCTGTCAAGGACCAAGGCAGTTGTGTCTCTAGCACTGGAGCTATTGAAGGAGTCAACGCAATAGTCACTGGAGACCTCATTAGCCTTTCAGAGCAAGAGCTTGTGGATTGTGACAGCAGTAACGAAGGATGTGAGGGAGGCTACATGGACTACGCTTTTGAATGGGTTATTAGCAATGGTGGTATTGATACGGAAACTGATTACCCATACAGCGGTGTGGATGGTACATGCAGCATCACCAAGGTCTGGTTCCTCACTATAGCTTATAATGCTTCTGTCTGGAACAAATTTTATCCACTCTTCATTTGTTCTAATTTGTGTGCTGCCTTACACAGGAGGAAACCAAAGCCGTCTCCATTGACGGATATGAAGATGTGGGAGAAACAGACGCTGATCTTTTATGTGCTGCTGTTCAGCAGCCCGTTAGTGTTGGTATGGACGGTTCTGCTTGGGATTTCCAACTTTACACCGGAGGTATCTACGACGGTGAGTGCTCCTCTGATCCAAACGACATTGACCATGCAGTTCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

339

Amino Acids

38.18

Weight (kDa)

8.88

Isoelectric Point (pI)

42.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013633)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07700
malus_domestica	MD05G1300100.v1.1
prunus_persica	Prupe.4G062200_v2.0.a1 Prupe.4G062200_v2.0.a1 Prupe.4G062200_v2.0.a1
pyrus_communis	pycom05g27800 pycom05g27830
rosa_chinensis	RchiOBHm_Chr5g0010931
rosa_laevigata	RLG00000031798
rosa_multiflora	Rmu_sc0001895.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065440
rosa_rugosa	Rorug04G0453800
rosa_samantha	Rh5AG086400 Rh5BG080900 Rh5CG093400 Rh5DG081000
rosa_wichuraiana	Rw0G017430 Rw0G017880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	750
AasI	GACNNNNNNGTC	1 cut(s)	352
AccB7I	CCANNNNNTGG	1 cut(s)	729
AciI	CCGC	1 cut(s)	696
AclWI	GGATC	1 cut(s)	979
AcsI	RAATTY	2 cut(s)	15, 770
AfaI	GTAC	1 cut(s)	709
AfiI	CCNNNNNNNGG	4 cut(s)	96, 695, 729, 816
AgsI	TTSAA	5 cut(s)	20, 223, 307, 530, 644
AjnI	CCWGG	1 cut(s)	399
AjuI	GAANNNNNNNTTGG	2 cut(s)	716, 748
AleI	CACNNNNGTG	1 cut(s)	55
AluBI	AGCT	4 cut(s)	145, 524, 583, 746
AluI	AGCT	4 cut(s)	145, 524, 583, 746
Alw21I	GWGCWC	1 cut(s)	979
Alw26I	GTCTC	4 cut(s)	77, 514, 549, 840
AlwI	GGATC	1 cut(s)	979
AlwNI	CAGNNNCTG	1 cut(s)	874
ApeKI	GCWGC	4 cut(s)	714, 806, 889, 900
ApoI	RAATTY	2 cut(s)	15, 770
ArsI	GACNNNNNNTTYG	2 cut(s)	623, 655
Asp700I	GAANNNNTTC	1 cut(s)	117
AspS9I	GGNCC	1 cut(s)	493
AsuHPI	GGTGA	3 cut(s)	415, 712, 982
AvaII	GGWCC	1 cut(s)	493
BbsI	GAAGAC	1 cut(s)	350
Bbv12I	GWGCWC	1 cut(s)	979
BbvI	GCAGC	4 cut(s)	726, 793, 876, 912
BccI	CCATC	2 cut(s)	291, 698
BceAI	ACGGC	1 cut(s)	817
BciT130I	CCWGG	1 cut(s)	401
BcoDI	GTCTC	4 cut(s)	77, 514, 549, 840
BfaI	CTAG	2 cut(s)	69, 513
BfmI	CTRYAG	2 cut(s)	123, 741
BisI	GCNGC	4 cut(s)	715, 807, 890, 901
BlsI	GCNGC	4 cut(s)	716, 808, 891, 902
Bme1390I	CCNGG	1 cut(s)	401
Bme18I	GGWCC	1 cut(s)	493
BmgT120I	GGNCC	1 cut(s)	493
BmiI	GGNNCC	2 cut(s)	7, 734
BmrFI	CCNGG	1 cut(s)	401
BmsI	GCATC	4 cut(s)	56, 259, 430, 726
BoxI	GACNNNNGTC	1 cut(s)	485
BpiI	GAAGAC	1 cut(s)	350
BplI	GAGNNNNNCTC	2 cut(s)	964, 996
BpmI	CTGGAG	3 cut(s)	213, 540, 573
BpuEI	CTTGAG	1 cut(s)	218
BsaI	GGTCTC	1 cut(s)	549
BsaJI	CCNNGG	2 cut(s)	496, 723
BsaWI	WCCGGW	1 cut(s)	952
Bsc4I	CCNNNNNNNGG	4 cut(s)	96, 695, 729, 816
Bse1I	ACTGG	4 cut(s)	57, 425, 523, 556
Bse3DI	GCAATG	1 cut(s)	664
BseBI	CCWGG	1 cut(s)	401
BseDI	CCNNGG	2 cut(s)	496, 723
BseGI	GGATG	3 cut(s)	274, 617, 709
BseLI	CCNNNNNNNGG	4 cut(s)	96, 695, 729, 816
BseMI	GCAATG	1 cut(s)	664
BseNI	ACTGG	4 cut(s)	57, 425, 523, 556
BseRI	GAGGAG	4 cut(s)	143, 220, 347, 969
BseXI	GCAGC	4 cut(s)	726, 793, 876, 912
BsiHKAI	GWGCWC	1 cut(s)	979
BsiSI	CCGG	1 cut(s)	953
BslI	CCNNNNNNNGG	4 cut(s)	96, 695, 729, 816
BsmAI	GTCTC	4 cut(s)	77, 514, 549, 840
BsmBI	CGTCTC	1 cut(s)	840
BsmI	GAATGC	1 cut(s)	259
Bso31I	GGTCTC	1 cut(s)	549
Bsp1286I	GDGCHC	1 cut(s)	979
Bsp143I	GATC	2 cut(s)	876, 984
BspACI	CCGC	1 cut(s)	696
BspLI	GGNNCC	2 cut(s)	7, 734
BspMAI	CTGCAG	1 cut(s)	127
BspPI	GGATC	1 cut(s)	979
BspTNI	GGTCTC	1 cut(s)	549
BsrDI	GCAATG	1 cut(s)	664
BsrI	ACTGG	4 cut(s)	57, 425, 523, 556
BssECI	CCNNGG	2 cut(s)	496, 723
BssMI	GATC	2 cut(s)	876, 984
BssT1I	CCWWGG	2 cut(s)	496, 723
Bst2UI	CCWGG	1 cut(s)	401
Bst4CI	ACNGT	2 cut(s)	925, 970
Bst6I	CTCTTC	2 cut(s)	257, 788
BstAPI	GCANNNNNTGC	1 cut(s)	278
BstC8I	GCNNGC	2 cut(s)	58, 189
BstENI	CCTNNNNNAGG	1 cut(s)	814
BstF5I	GGATG	3 cut(s)	274, 617, 709
BstKTI	GATC	2 cut(s)	879, 987
BstMAI	GTCTC	4 cut(s)	77, 514, 549, 840
BstMBI	GATC	2 cut(s)	876, 984
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 151, 160, 278, 752
BstNI	CCWGG	1 cut(s)	401
BstNSI	RCATGY	2 cut(s)	191, 714
BstPAI	GACNNNNGTC	1 cut(s)	485
BstSCI	CCNGG	1 cut(s)	399
BstSFI	CTRYAG	2 cut(s)	123, 741
BstV1I	GCAGC	4 cut(s)	726, 793, 876, 912
BstV2I	GAAGAC	1 cut(s)	350
BtsCI	GGATG	3 cut(s)	274, 617, 709
BtsIMutI	CAGTG	4 cut(s)	50, 432, 516, 549
Cac8I	GCNNGC	2 cut(s)	58, 189
CaiI	CAGNNNCTG	1 cut(s)	874
Cfr13I	GGNCC	1 cut(s)	493
CseI	GACGC	1 cut(s)	880
CsiI	ACCWGGT	1 cut(s)	399
Csp6I	GTAC	1 cut(s)	708
CviAII	CATG	7 cut(s)	188, 200, 322, 435, 628, 711, 1003
CviQI	GTAC	1 cut(s)	708
DpnI	GATC	2 cut(s)	878, 986
DpnII	GATC	2 cut(s)	876, 984
DrdI	GACNNNNNNGTC	1 cut(s)	352
DseDI	GACNNNNNNGTC	1 cut(s)	352
Eam1104I	CTCTTC	2 cut(s)	257, 788
EarI	CTCTTC	2 cut(s)	257, 788
Eco130I	CCWWGG	2 cut(s)	496, 723
Eco31I	GGTCTC	1 cut(s)	549
Eco47I	GGWCC	1 cut(s)	493
EcoNI	CCTNNNNNAGG	1 cut(s)	814
EcoRII	CCWGG	1 cut(s)	399
EcoT14I	CCWWGG	2 cut(s)	496, 723
ErhI	CCWWGG	2 cut(s)	496, 723
Esp3I	CGTCTC	1 cut(s)	840
FaeI	CATG	7 cut(s)	191, 203, 325, 438, 631, 714, 1006
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FatI	CATG	7 cut(s)	187, 199, 321, 434, 627, 710, 1002
Fnu4HI	GCNGC	4 cut(s)	715, 807, 890, 901
FokI	GGATG	3 cut(s)	281, 624, 716
Fsp4HI	GCNGC	4 cut(s)	715, 807, 890, 901
FspBI	CTAG	2 cut(s)	69, 513
GluI	GCNGC	4 cut(s)	715, 807, 890, 901
GsuI	CTGGAG	3 cut(s)	213, 540, 573
HapII	CCGG	1 cut(s)	953
HgaI	GACGC	1 cut(s)	880
Hin1II	CATG	7 cut(s)	191, 203, 325, 438, 631, 714, 1006
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HinfI	GANTC	3 cut(s)	229, 391, 534
HpaII	CCGG	1 cut(s)	953
HphI	GGTGA	3 cut(s)	415, 712, 982
Hpy166II	GTNNAC	1 cut(s)	538
Hpy188I	TCNGA	3 cut(s)	294, 574, 984
Hpy188III	TCNNGA	3 cut(s)	223, 340, 763
Hpy8I	GTNNAC	1 cut(s)	538
Hpy99I	CGWCG	1 cut(s)	970
HpyAV	CCTTC	7 cut(s)	169, 355, 386, 456, 463, 524, 602
HpyCH4III	ACNGT	2 cut(s)	925, 970
HpyCH4V	TGCA	6 cut(s)	125, 257, 272, 367, 714, 1006
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 151, 160, 278, 752
Hsp92II	CATG	7 cut(s)	191, 203, 325, 438, 631, 714, 1006
Kzo9I	GATC	2 cut(s)	876, 984
LmnI	GCTCC	4 cut(s)	142, 448, 521, 982
Lsp1109I	GCAGC	4 cut(s)	726, 793, 876, 912
LweI	GCATC	4 cut(s)	56, 259, 430, 726
MabI	ACCWGGT	1 cut(s)	399
MaeI	CTAG	2 cut(s)	69, 513
MaeIII	GTNAC	4 cut(s)	478, 547, 593, 602
MalI	GATC	2 cut(s)	878, 986
MboI	GATC	2 cut(s)	876, 984
MfeI	CAATTG	1 cut(s)	20
MhlI	GDGCHC	1 cut(s)	979
MluCI	AATT	4 cut(s)	15, 20, 770, 796
MlyI	GAGTC	1 cut(s)	543
MmeI	TCCRAC	2 cut(s)	225, 966
MroXI	GAANNNNTTC	1 cut(s)	117
MseI	TTAA	1 cut(s)	396
MslI	CAYNNNNRTG	1 cut(s)	55
MspA1I	CMGCKG	1 cut(s)	696
MspI	CCGG	1 cut(s)	953
MspR9I	CCNGG	1 cut(s)	401
MunI	CAATTG	1 cut(s)	20
Mva1269I	GAATGC	1 cut(s)	259
MvaI	CCWGG	1 cut(s)	401
MwoI	GCNNNNNNNGC	5 cut(s)	53, 151, 160, 278, 752
NdeII	GATC	2 cut(s)	876, 984
NlaIII	CATG	7 cut(s)	191, 203, 325, 438, 631, 714, 1006
NlaIV	GGNNCC	2 cut(s)	7, 734
NmuCI	GTSAC	3 cut(s)	478, 547, 593
NspI	RCATGY	2 cut(s)	191, 714
OliI	CACNNNNGTG	1 cut(s)	55
PaeI	GCATGC	1 cut(s)	191
PctI	GAATGC	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	117
PfeI	GAWTC	2 cut(s)	229, 391
PflMI	CCANNNNNTGG	1 cut(s)	729
PkrI	GCNGC	4 cut(s)	716, 808, 891, 902
PleI	GAGTC	1 cut(s)	542
PpsI	GAGTC	1 cut(s)	542
PshAI	GACNNNNGTC	1 cut(s)	485
PsiI	TTATAA	1 cut(s)	750
Psp6I	CCWGG	1 cut(s)	399
PspGI	CCWGG	1 cut(s)	399
PspN4I	GGNNCC	2 cut(s)	7, 734
PspPI	GGNCC	1 cut(s)	493
PsrI	GAACNNNNNNTAC	2 cut(s)	909, 941
PstI	CTGCAG	1 cut(s)	127
PstNI	CAGNNNCTG	1 cut(s)	874
RsaI	GTAC	1 cut(s)	709
RsaNI	GTAC	1 cut(s)	708
RseI	CAYNNNNRTG	1 cut(s)	55
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	4 cut(s)	715, 807, 890, 901
Sau3AI	GATC	2 cut(s)	876, 984
Sau96I	GGNCC	1 cut(s)	493
SchI	GAGTC	1 cut(s)	543
ScrFI	CCNGG	1 cut(s)	401
SduI	GDGCHC	1 cut(s)	979
SexAI	ACCWGGT	1 cut(s)	399
SfaNI	GCATC	4 cut(s)	56, 259, 430, 726
SfcI	CTRYAG	2 cut(s)	123, 741
SinI	GGWCC	1 cut(s)	493
SmiMI	CAYNNNNRTG	1 cut(s)	55
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
SphI	GCATGC	1 cut(s)	191
Sse9I	AATT	4 cut(s)	15, 20, 770, 796
SsiI	CCGC	1 cut(s)	696
SspMI	CTAG	2 cut(s)	69, 513
StyD4I	CCNGG	1 cut(s)	399
StyI	CCWWGG	2 cut(s)	496, 723
TaaI	ACNGT	2 cut(s)	925, 970
TaqI	TCGA	1 cut(s)	456
TasI	AATT	4 cut(s)	15, 20, 770, 796
TfiI	GAWTC	2 cut(s)	229, 391
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TscAI	CASTG	4 cut(s)	57, 432, 523, 556
TseFI	GTSAC	3 cut(s)	478, 547, 593
TseI	GCWGC	4 cut(s)	714, 806, 889, 900
Tsp45I	GTSAC	3 cut(s)	478, 547, 593
TspDTI	ATGAA	3 cut(s)	28, 775, 866
TspGWI	ACGGA	2 cut(s)	689, 860
TspRI	CASTG	4 cut(s)	57, 432, 523, 556
Van91I	CCANNNNNTGG	1 cut(s)	729
VpaK11BI	GGWCC	1 cut(s)	493
XagI	CCTNNNNNAGG	1 cut(s)	814
XapI	RAATTY	2 cut(s)	15, 770
XceI	RCATGY	2 cut(s)	191, 714
XmnI	GAANNNNTTC	1 cut(s)	117
XspI	CTAG	2 cut(s)	69, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.