Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0013633

Physical Location & Seq

Genomic Coordinates Forward (+)

6888900 .. 6892387

Gene Structure 3488 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG080900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGGTTGCCACAAAATTGAACTGGCTCTTGCTTTTTTCATCTGTGCTTCACTAGCTTGCTTCTCTTATGGTCTCCCTAGTGAGTACTCCATAGTGGGAGGTGAAACAGAGAACTTCCCAGCTGAGGAGAGAGTGGTGGAGCTCTTCCGGCTGTGGAGGGAGAAGCACAGAAAGGTGTATAACCATGTTGAGGAGCATGAGAGGAGGTTTGAGAATTTCAAGAGGAATCTCAGGTTTGTGTTGGAGAAACATGCACAGAAAAAGGCTGCAGCTAATAAGCATGATACTCAGAGAGTCGGGTTGAACAAGTTTGCTGATTTGAGCAATGAGGAGTTCAGGGCGATTTATATGCCGAAAAAGGTCCGAATGCCGATCAGCAAAAGGGACAGACTGGTGAGGAAAATGCAGCAGCAAAAGAAAGCAGAGCTGCCTAGGGATGCTCCTGCAAGTTTGGATTGGAGGAAGGCGGGAATTGTCACTCCTGTTAAGGACCAAGGCAGTTGTGGAAGTTGTTGGGCATTTTCTTCCACTGGAGCCATCGAAGGAATAAATGCACTGGACACCGGAGACCTCATTAGTCTTTCGGAGCAAGAACTTGTGGATTGTGACACTACCAACGAAGGCTGCAGTGGAGGCTACATGGACTACGCTTTCGAATGGATTATTAGCAATGGTGGCATTGACACAGAATCTGATTATGCTTACACAGGTGTTGATGGTACCTGCAATGTCACCAAGGAGGAAACCAAAGTTGTCACCATCGATGGCTATACAGATGTTGAAGAGACAGAGACCGGTGTTTTCAATGCTGTGCTTCAGCAACCCATTAGCGTTGGTATGGATGGCTCTGCTTGGGATTTTCAATTATACTCAGGAGTAAGTCTAATTGCTGTTCATTTCACTTCATTTGTTGGCCTTGATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

308

Amino Acids

34.56

Weight (kDa)

5.23

Isoelectric Point (pI)

39.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	49 - 112	5.5e-14	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	148 - 292	1.3e-50	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013633)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07700
malus_domestica	MD05G1300100.v1.1
prunus_persica	Prupe.4G062200_v2.0.a1 Prupe.4G062200_v2.0.a1 Prupe.4G062200_v2.0.a1
pyrus_communis	pycom05g27800 pycom05g27830
rosa_chinensis	RchiOBHm_Chr5g0010931
rosa_laevigata	RLG00000031798
rosa_multiflora	Rmu_sc0001895.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065440
rosa_rugosa	Rorug04G0453800
rosa_samantha	Rh5AG086400 Rh5BG080900 Rh5CG093400 Rh5DG081000
rosa_wichuraiana	Rw0G017430 Rw0G017880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	731
Acc65I	GGTACC	1 cut(s)	719
AccB1I	GGYRCC	1 cut(s)	719
AciI	CCGC	1 cut(s)	467
AcsI	RAATTY	1 cut(s)	214
AcuI	CTGAAG	1 cut(s)	800
AfaI	GTAC	2 cut(s)	86, 721
AfiI	CCNNNNNNNGG	2 cut(s)	124, 190
AgeI	ACCGGT	1 cut(s)	794
AgsI	TTSAA	6 cut(s)	20, 220, 304, 782, 805, 863
AluBI	AGCT	5 cut(s)	56, 122, 142, 272, 427
AluI	AGCT	5 cut(s)	56, 122, 142, 272, 427
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	4 cut(s)	77, 561, 779, 785
AlwNI	CAGNNNCTG	1 cut(s)	692
AoxI	GGCC	1 cut(s)	913
ApeKI	GCWGC	6 cut(s)	266, 269, 406, 409, 427, 624
ApoI	RAATTY	1 cut(s)	214
ArsI	GACNNNNNNTTYG	2 cut(s)	635, 667
AsiGI	ACCGGT	1 cut(s)	794
Asp718I	GGTACC	1 cut(s)	719
AspA2I	CCTAGG	1 cut(s)	431
AspS9I	GGNCC	2 cut(s)	361, 490
AsuHPI	GGTGA	4 cut(s)	113, 406, 724, 748
AsuII	TTCGAA	1 cut(s)	654
AvaII	GGWCC	2 cut(s)	361, 490
AvrII	CCTAGG	1 cut(s)	431
BanI	GGYRCC	1 cut(s)	719
BanII	GRGCYC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	144
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	6 cut(s)	253, 281, 414, 418, 421, 611
BccI	CCATC	5 cut(s)	545, 710, 758, 767, 836
BcgI	CGANNNNNNTGC	2 cut(s)	331, 365
BcoDI	GTCTC	4 cut(s)	77, 561, 779, 785
BfaI	CTAG	3 cut(s)	53, 78, 432
BfmI	CTRYAG	2 cut(s)	267, 625
BfuAI	ACCTGC	1 cut(s)	731
BisI	GCNGC	6 cut(s)	267, 270, 407, 410, 428, 625
BlnI	CCTAGG	1 cut(s)	431
BlsI	GCNGC	6 cut(s)	268, 271, 408, 411, 429, 626
BmcAI	AGTACT	1 cut(s)	86
Bme18I	GGWCC	2 cut(s)	361, 490
BmgT120I	GGNCC	2 cut(s)	361, 490
BmiI	GGNNCC	2 cut(s)	535, 721
BmsI	GCATC	1 cut(s)	427
BpmI	CTGGAG	1 cut(s)	552
Bpu10I	CCTNAGC	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	654
Bsa29I	ATCGAT	1 cut(s)	762
BsaI	GGTCTC	3 cut(s)	77, 561, 785
BsaJI	CCNNGG	3 cut(s)	431, 493, 735
BsaWI	WCCGGW	2 cut(s)	563, 794
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 190
Bse118I	RCCGGY	1 cut(s)	794
Bse1I	ACTGG	4 cut(s)	27, 396, 535, 561
Bse3DI	GCAATG	3 cut(s)	331, 676, 733
BseCI	ATCGAT	1 cut(s)	762
BseDI	CCNNGG	3 cut(s)	431, 493, 735
BseGI	GGATG	2 cut(s)	442, 847
BseLI	CCNNNNNNNGG	2 cut(s)	124, 190
BseMI	GCAATG	3 cut(s)	331, 676, 733
BseMII	CTCAG	4 cut(s)	114, 244, 302, 885
BseNI	ACTGG	4 cut(s)	27, 396, 535, 561
BseRI	GAGGAG	4 cut(s)	140, 206, 217, 344
BseXI	GCAGC	6 cut(s)	253, 281, 414, 418, 421, 611
BseYI	CCCAGC	1 cut(s)	118
BshFI	GGCC	1 cut(s)	915
BshNI	GGYRCC	1 cut(s)	719
BshTI	ACCGGT	1 cut(s)	794
BshVI	ATCGAT	1 cut(s)	762
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	3 cut(s)	148, 564, 795
BslFI	GGGAC	1 cut(s)	398
BslI	CCNNNNNNNGG	2 cut(s)	124, 190
BsmAI	GTCTC	4 cut(s)	77, 561, 779, 785
BsmFI	GGGAC	1 cut(s)	398
BsmI	GAATGC	1 cut(s)	372
BsnI	GGCC	1 cut(s)	915
Bso31I	GGTCTC	3 cut(s)	77, 561, 785
Bsp119I	TTCGAA	1 cut(s)	654
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	372
BspACI	CCGC	1 cut(s)	467
BspANI	GGCC	1 cut(s)	915
BspCNI	CTCAG	4 cut(s)	115, 243, 301, 884
BspDI	ATCGAT	1 cut(s)	762
BspLI	GGNNCC	2 cut(s)	535, 721
BspMAI	CTGCAG	2 cut(s)	271, 629
BspMI	ACCTGC	1 cut(s)	731
BspQI	GCTCTTC	1 cut(s)	149
BspT104I	TTCGAA	1 cut(s)	654
BspT107I	GGYRCC	1 cut(s)	719
BspTNI	GGTCTC	3 cut(s)	77, 561, 785
BsrDI	GCAATG	3 cut(s)	331, 676, 733
BsrFI	RCCGGY	1 cut(s)	794
BsrI	ACTGG	4 cut(s)	27, 396, 535, 561
BssAI	RCCGGY	1 cut(s)	794
BssECI	CCNNGG	3 cut(s)	431, 493, 735
BssMI	GATC	1 cut(s)	372
BssT1I	CCWWGG	3 cut(s)	431, 493, 735
Bst6I	CTCTTC	2 cut(s)	149, 777
BstBI	TTCGAA	1 cut(s)	654
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	4 cut(s)	123, 230, 288, 871
BstF5I	GGATG	2 cut(s)	442, 847
BstKTI	GATC	1 cut(s)	375
BstMAI	GTCTC	4 cut(s)	77, 561, 779, 785
BstMBI	GATC	1 cut(s)	372
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 148, 633, 675
BstNSI	RCATGY	1 cut(s)	254
BstSFI	CTRYAG	2 cut(s)	267, 625
BstV1I	GCAGC	6 cut(s)	253, 281, 414, 418, 421, 611
Bsu15I	ATCGAT	1 cut(s)	762
BsuRI	GGCC	1 cut(s)	915
BsuTUI	ATCGAT	1 cut(s)	762
BtsCI	GGATG	2 cut(s)	442, 847
BtsI	GCAGTG	1 cut(s)	634
BtsIMutI	CAGTG	3 cut(s)	528, 554, 634
BveI	ACCTGC	1 cut(s)	731
Cac8I	GCNNGC	1 cut(s)	58
CaiI	CAGNNNCTG	1 cut(s)	692
Cfr10I	RCCGGY	1 cut(s)	794
Cfr13I	GGNCC	2 cut(s)	361, 490
ClaI	ATCGAT	1 cut(s)	762
Csp6I	GTAC	2 cut(s)	85, 720
CspAI	ACCGGT	1 cut(s)	794
CviAII	CATG	5 cut(s)	185, 197, 251, 281, 640
CviQI	GTAC	2 cut(s)	85, 720
DdeI	CTNAG	4 cut(s)	123, 230, 288, 871
DpnI	GATC	1 cut(s)	374
DpnII	GATC	1 cut(s)	372
Eam1104I	CTCTTC	2 cut(s)	149, 777
EarI	CTCTTC	2 cut(s)	149, 777
Ecl136II	GAGCTC	1 cut(s)	142
Eco130I	CCWWGG	3 cut(s)	431, 493, 735
Eco24I	GRGCYC	1 cut(s)	144
Eco31I	GGTCTC	3 cut(s)	77, 561, 785
Eco32I	GATATC	1 cut(s)	922
Eco47I	GGWCC	2 cut(s)	361, 490
Eco53kI	GAGCTC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	800
EcoICRI	GAGCTC	1 cut(s)	142
EcoRV	GATATC	1 cut(s)	922
EcoT14I	CCWWGG	3 cut(s)	431, 493, 735
EcoT38I	GRGCYC	1 cut(s)	144
ErhI	CCWWGG	3 cut(s)	431, 493, 735
FaeI	CATG	5 cut(s)	188, 200, 254, 284, 643
FaqI	GGGAC	1 cut(s)	398
FatI	CATG	5 cut(s)	184, 196, 250, 280, 639
FauI	CCCGC	1 cut(s)	460
Fnu4HI	GCNGC	6 cut(s)	267, 270, 407, 410, 428, 625
FokI	GGATG	2 cut(s)	449, 854
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	6 cut(s)	267, 270, 407, 410, 428, 625
FspBI	CTAG	3 cut(s)	53, 78, 432
GluI	GCNGC	6 cut(s)	267, 270, 407, 410, 428, 625
GsaI	CCCAGC	1 cut(s)	122
GsuI	CTGGAG	1 cut(s)	552
HaeIII	GGCC	1 cut(s)	915
HapII	CCGG	3 cut(s)	148, 564, 795
Hin1II	CATG	5 cut(s)	188, 200, 254, 284, 643
HinfI	GANTC	3 cut(s)	226, 294, 689
HpaII	CCGG	3 cut(s)	148, 564, 795
HphI	GGTGA	4 cut(s)	113, 406, 724, 748
Hpy188I	TCNGA	5 cut(s)	291, 365, 586, 694, 926
Hpy188III	TCNNGA	2 cut(s)	220, 873
HpyAV	CCTTC	3 cut(s)	457, 536, 614
HpyCH4V	TGCA	7 cut(s)	254, 269, 406, 446, 554, 627, 726
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 148, 633, 675
HpyF3I	CTNAG	4 cut(s)	123, 230, 288, 871
Hsp92II	CATG	5 cut(s)	188, 200, 254, 284, 643
KpnI	GGTACC	1 cut(s)	723
Kzo9I	GATC	1 cut(s)	372
LguI	GCTCTTC	1 cut(s)	149
LmnI	GCTCC	5 cut(s)	139, 193, 445, 533, 586
Lsp1109I	GCAGC	6 cut(s)	253, 281, 414, 418, 421, 611
LweI	GCATC	1 cut(s)	427
MaeI	CTAG	3 cut(s)	53, 78, 432
MaeIII	GTNAC	4 cut(s)	475, 605, 730, 754
MalI	GATC	1 cut(s)	374
MboI	GATC	1 cut(s)	372
MboII	GAAGA	3 cut(s)	136, 516, 794
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	5 cut(s)	15, 214, 471, 863, 885
MlyI	GAGTC	1 cut(s)	303
MmeI	TCCRAC	1 cut(s)	222
MseI	TTAA	1 cut(s)	486
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	3 cut(s)	148, 564, 795
Mva1269I	GAATGC	1 cut(s)	372
MwoI	GCNNNNNNNGC	4 cut(s)	53, 148, 633, 675
NdeII	GATC	1 cut(s)	372
NlaIII	CATG	5 cut(s)	188, 200, 254, 284, 643
NlaIV	GGNNCC	2 cut(s)	535, 721
NmuCI	GTSAC	4 cut(s)	475, 605, 730, 754
NspI	RCATGY	1 cut(s)	254
NspV	TTCGAA	1 cut(s)	654
PciSI	GCTCTTC	1 cut(s)	149
PctI	GAATGC	1 cut(s)	372
PfeI	GAWTC	2 cut(s)	226, 689
PinAI	ACCGGT	1 cut(s)	794
PkrI	GCNGC	6 cut(s)	268, 271, 408, 411, 429, 626
PleI	GAGTC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	302
Psp124BI	GAGCTC	1 cut(s)	144
PspFI	CCCAGC	1 cut(s)	118
PspN4I	GGNNCC	2 cut(s)	535, 721
PspPI	GGNCC	2 cut(s)	361, 490
PstI	CTGCAG	2 cut(s)	271, 629
PstNI	CAGNNNCTG	1 cut(s)	692
PvuII	CAGCTG	1 cut(s)	122
RsaI	GTAC	2 cut(s)	86, 721
RsaNI	GTAC	2 cut(s)	85, 720
SacI	GAGCTC	1 cut(s)	144
SapI	GCTCTTC	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	486
SatI	GCNGC	6 cut(s)	267, 270, 407, 410, 428, 625
Sau3AI	GATC	1 cut(s)	372
Sau96I	GGNCC	2 cut(s)	361, 490
ScaI	AGTACT	1 cut(s)	86
SchI	GAGTC	1 cut(s)	303
SduI	GDGCHC	1 cut(s)	144
SfaNI	GCATC	1 cut(s)	427
SfcI	CTRYAG	2 cut(s)	267, 625
SfuI	TTCGAA	1 cut(s)	654
SinI	GGWCC	2 cut(s)	361, 490
Sse9I	AATT	5 cut(s)	15, 214, 471, 863, 885
SsiI	CCGC	1 cut(s)	467
SspMI	CTAG	3 cut(s)	53, 78, 432
SstI	GAGCTC	1 cut(s)	144
StyI	CCWWGG	3 cut(s)	431, 493, 735
TaqI	TCGA	3 cut(s)	540, 654, 762
TasI	AATT	5 cut(s)	15, 214, 471, 863, 885
TatI	WGTACW	1 cut(s)	84
TfiI	GAWTC	2 cut(s)	226, 689
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TscAI	CASTG	3 cut(s)	535, 561, 634
TseFI	GTSAC	4 cut(s)	475, 605, 730, 754
TseI	GCWGC	6 cut(s)	266, 269, 406, 409, 427, 624
Tsp45I	GTSAC	4 cut(s)	475, 605, 730, 754
TspDTI	ATGAA	3 cut(s)	28, 884, 894
TspRI	CASTG	3 cut(s)	535, 561, 634
VpaK11BI	GGWCC	2 cut(s)	361, 490
XapI	RAATTY	1 cut(s)	214
XceI	RCATGY	1 cut(s)	254
XcmI	CCANNNNNNNNNTGG	1 cut(s)	500
XmaJI	CCTAGG	1 cut(s)	431
XspI	CTAG	3 cut(s)	53, 78, 432
ZrmI	AGTACT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.