FvH4_3g08290

Pathogenesis-related genes transcriptional activator PTI5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016284
Physical Location & Seq
Reverse (-)
4851587 .. 4852102
516 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g08290.t1

Sequence Viewer

Length: 516 bp
ATGGTTTTAGCTTCCCAGAACGAGCTTCCATTGAATGAGAACGACTCGCAAGACATGGTCATATGCCAAGCTCTAAACGAAGCCATGGCTCTGAGTCGCTCATCCTTGCCTGAAACACACCAAATCCCGAATCACCAATCGACTTCAAATGGCCTCAAACCTGTTAAGAACGTCGGAAAGAAGCACTATAGAGGCGTAAGGCGTCGTCCATGGGGTAAATACGCAGCTGAAATCCGCGACTCTGCGCGACACGGTGCACGTGTATGGCTAGGCACGTTTAACACGGCCGAAGAAGCTGCCTTGGCATATGATCAAGCTGCTTTTCGAATGAGAGGTACCAAGGCCATACTCAACTTTCCAGCTGAATTTGTTGCTTCGTTGTCAATACAAAGAGTTGCGCCAAGCTTTAATGTACCCAGTTGCTTAAATAACAGTACTGGCACAACCATGGAGGCACCAGAAACATCAGAATCTGAGAGGAAAACAAGTACTACGGTGGAGGCACCATATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
AP2

Protein Analysis

172

Amino Acids

18.87

Weight (kDa)

8.62

Isoelectric Point (pI)

55.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 62 - 112 3.1e-16 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016284)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08290
malus_domestica MD05G1306900.v1.1 MD10G1286300.v1.1
prunus_persica Prupe.4G055500_v2.0.a1
pyrus_communis pycom05g28380
rosa_chinensis RchiOBHm_Chr5g0009711
rosa_laevigata RLG00000031682
rosa_multiflora Rmu_sc0005805.1_g000005
rosa_roxburghii Rroxscaffold_1G00066500
rosa_rugosa Rorug04G0445100
rosa_samantha Rh5AG076600 Rh5BG071800 Rh5CG084400 Rh5DG072400
rosa_wichuraiana Rw5G007060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 335
AccB1I GGYRCC 3 cut(s) 335, 454, 502
AccII CGCG 2 cut(s) 237, 247
AciI CCGC 1 cut(s) 235
AcoI YGGCCR 1 cut(s) 285
AcsI RAATTY 1 cut(s) 365
AcvI CACGTG 1 cut(s) 260
AcyI GRCGYC 1 cut(s) 202
AfaI GTAC 4 cut(s) 337, 414, 436, 490
AflIII ACRYGT 1 cut(s) 259
AgsI TTSAA 2 cut(s) 34, 147
AluBI AGCT 8 cut(s) 11, 25, 71, 227, 296, 317, 362, 405
AluI AGCT 8 cut(s) 11, 25, 71, 227, 296, 317, 362, 405
Alw21I GWGCWC 1 cut(s) 259
Alw44I GTGCAC 1 cut(s) 255
AlwNI CAGNNNCTG 1 cut(s) 473
AoxI GGCC 3 cut(s) 151, 285, 342
ApaLI GTGCAC 1 cut(s) 255
ApeKI GCWGC 3 cut(s) 224, 296, 317
ApoI RAATTY 1 cut(s) 365
Asp718I GGTACC 1 cut(s) 335
AspLEI GCGC 2 cut(s) 247, 400
AsuHPI GGTGA 1 cut(s) 125
AsuII TTCGAA 1 cut(s) 325
BaeGI GKGCMC 1 cut(s) 259
BanI GGYRCC 3 cut(s) 335, 454, 502
BbrPI CACGTG 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 259
BbvI GCAGC 3 cut(s) 236, 283, 304
BceAI ACGGC 1 cut(s) 300
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BclI TGATCA 1 cut(s) 310
BfaI CTAG 1 cut(s) 269
BfmI CTRYAG 1 cut(s) 187
BisI GCNGC 3 cut(s) 225, 297, 318
BlsI GCNGC 3 cut(s) 226, 298, 319
BmcAI AGTACT 2 cut(s) 436, 490
BmiI GGNNCC 3 cut(s) 337, 456, 504
BmrI ACTGGG 1 cut(s) 411
BmuI ACTGGG 1 cut(s) 411
BplI GAGNNNNNCTC 2 cut(s) 29, 61
Bpu14I TTCGAA 1 cut(s) 325
BsaAI YACGTR 1 cut(s) 260
BsaHI GRCGYC 1 cut(s) 202
BsaJI CCNNGG 5 cut(s) 84, 209, 300, 339, 447
Bse1I ACTGG 2 cut(s) 417, 442
BseDI CCNNGG 5 cut(s) 84, 209, 300, 339, 447
BseGI GGATG 1 cut(s) 101
BseMII CTCAG 2 cut(s) 83, 465
BseNI ACTGG 2 cut(s) 417, 442
BseSI GKGCMC 1 cut(s) 259
BseX3I CGGCCG 1 cut(s) 285
BseXI GCAGC 3 cut(s) 236, 283, 304
Bsh1236I CGCG 2 cut(s) 237, 247
Bsh1285I CGRYCG 1 cut(s) 288
BshFI GGCC 3 cut(s) 153, 287, 344
BshNI GGYRCC 3 cut(s) 335, 454, 502
BsiEI CGRYCG 1 cut(s) 288
BsiHKAI GWGCWC 1 cut(s) 259
BsnI GGCC 3 cut(s) 153, 287, 344
Bsp119I TTCGAA 1 cut(s) 325
Bsp1286I GDGCHC 1 cut(s) 259
Bsp143I GATC 1 cut(s) 310
Bsp19I CCATGG 3 cut(s) 84, 209, 447
BspACI CCGC 1 cut(s) 235
BspANI GGCC 3 cut(s) 153, 287, 344
BspCNI CTCAG 2 cut(s) 84, 466
BspFNI CGCG 2 cut(s) 237, 247
BspLI GGNNCC 3 cut(s) 337, 456, 504
BspT104I TTCGAA 1 cut(s) 325
BspT107I GGYRCC 3 cut(s) 335, 454, 502
BsrI ACTGG 2 cut(s) 417, 442
BssECI CCNNGG 5 cut(s) 84, 209, 300, 339, 447
BssMI GATC 1 cut(s) 310
BssNI GRCGYC 1 cut(s) 202
BssT1I CCWWGG 5 cut(s) 84, 209, 300, 339, 447
Bst4CI ACNGT 3 cut(s) 254, 434, 496
BstACI GRCGYC 1 cut(s) 202
BstBAI YACGTR 1 cut(s) 260
BstBI TTCGAA 1 cut(s) 325
BstDEI CTNAG 2 cut(s) 92, 474
BstDSI CCRYGG 3 cut(s) 84, 209, 447
BstF5I GGATG 1 cut(s) 101
BstFNI CGCG 2 cut(s) 237, 247
BstHHI GCGC 2 cut(s) 247, 400
BstKTI GATC 1 cut(s) 313
BstMBI GATC 1 cut(s) 310
BstMCI CGRYCG 1 cut(s) 288
BstMWI GCNNNNNNNGC 2 cut(s) 293, 302
BstSFI CTRYAG 1 cut(s) 187
BstSLI GKGCMC 1 cut(s) 259
BstUI CGCG 2 cut(s) 237, 247
BstV1I GCAGC 3 cut(s) 236, 283, 304
BstZI CGGCCG 1 cut(s) 285
BsuRI GGCC 3 cut(s) 153, 287, 344
BtgI CCRYGG 3 cut(s) 84, 209, 447
BtsCI GGATG 1 cut(s) 101
CaiI CAGNNNCTG 1 cut(s) 473
CfoI GCGC 2 cut(s) 247, 400
CseI GACGC 1 cut(s) 191
Csp6I GTAC 4 cut(s) 336, 413, 435, 489
CviAII CATG 4 cut(s) 55, 85, 210, 448
CviQI GTAC 4 cut(s) 336, 413, 435, 489
DdeI CTNAG 2 cut(s) 92, 474
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
EaeI YGGCCR 1 cut(s) 285
EagI CGGCCG 1 cut(s) 285
EclXI CGGCCG 1 cut(s) 285
Eco130I CCWWGG 5 cut(s) 84, 209, 300, 339, 447
Eco52I CGGCCG 1 cut(s) 285
Eco72I CACGTG 1 cut(s) 260
EcoT14I CCWWGG 5 cut(s) 84, 209, 300, 339, 447
ErhI CCWWGG 5 cut(s) 84, 209, 300, 339, 447
FaeI CATG 4 cut(s) 58, 88, 213, 451
FatI CATG 4 cut(s) 54, 84, 209, 447
FauNDI CATATG 2 cut(s) 62, 307
FbaI TGATCA 1 cut(s) 310
Fnu4HI GCNGC 3 cut(s) 225, 297, 318
FokI GGATG 1 cut(s) 88
Fsp4HI GCNGC 3 cut(s) 225, 297, 318
FspBI CTAG 1 cut(s) 269
GlaI GCGC 2 cut(s) 246, 399
GluI GCNGC 3 cut(s) 225, 297, 318
HaeIII GGCC 3 cut(s) 153, 287, 344
HgaI GACGC 1 cut(s) 191
HhaI GCGC 2 cut(s) 247, 400
Hin1I GRCGYC 1 cut(s) 202
Hin1II CATG 4 cut(s) 58, 88, 213, 451
Hin6I GCGC 2 cut(s) 245, 398
HinP1I GCGC 2 cut(s) 245, 398
HindIII AAGCTT 1 cut(s) 403
HinfI GANTC 5 cut(s) 44, 94, 130, 239, 470
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 257
Hpy188I TCNGA 4 cut(s) 93, 176, 469, 475
Hpy188III TCNNGA 1 cut(s) 127
Hpy8I GTNNAC 1 cut(s) 257
Hpy99I CGWCG 2 cut(s) 176, 207
HpyCH4III ACNGT 3 cut(s) 254, 434, 496
HpyCH4IV ACGT 3 cut(s) 171, 259, 275
HpyCH4V TGCA 1 cut(s) 257
HpyF10VI GCNNNNNNNGC 2 cut(s) 293, 302
HpyF3I CTNAG 2 cut(s) 92, 474
HpySE526I ACGT 3 cut(s) 171, 259, 275
Hsp92I GRCGYC 1 cut(s) 202
Hsp92II CATG 4 cut(s) 58, 88, 213, 451
HspAI GCGC 2 cut(s) 245, 398
KpnI GGTACC 1 cut(s) 339
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 1 cut(s) 310
LpnPI CCDG 7 cut(s) 29, 123, 174, 372, 423, 430, 471
Lsp1109I GCAGC 3 cut(s) 236, 283, 304
MaeI CTAG 1 cut(s) 269
MaeII ACGT 3 cut(s) 171, 259, 275
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 1 cut(s) 302
MhlI GDGCHC 1 cut(s) 259
MluCI AATT 1 cut(s) 365
MlyI GAGTC 3 cut(s) 38, 103, 233
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 6 cut(s) 164, 185, 326, 445, 471, 493
MseI TTAA 4 cut(s) 165, 279, 408, 425
MslI CAYNNNNRTG 2 cut(s) 262, 446
MspA1I CMGCKG 2 cut(s) 227, 362
MvnI CGCG 2 cut(s) 237, 247
MwoI GCNNNNNNNGC 2 cut(s) 293, 302
NcoI CCATGG 3 cut(s) 84, 209, 447
NdeI CATATG 2 cut(s) 62, 307
NdeII GATC 1 cut(s) 310
NlaIII CATG 4 cut(s) 58, 88, 213, 451
NlaIV GGNNCC 3 cut(s) 337, 456, 504
NspV TTCGAA 1 cut(s) 325
PfeI GAWTC 2 cut(s) 130, 470
PflFI GACNNNGTC 1 cut(s) 56
PkrI GCNGC 3 cut(s) 226, 298, 319
PleI GAGTC 3 cut(s) 38, 102, 233
PmaCI CACGTG 1 cut(s) 260
PmlI CACGTG 1 cut(s) 260
PpsI GAGTC 3 cut(s) 38, 102, 233
Ppu21I YACGTR 1 cut(s) 260
PspCI CACGTG 1 cut(s) 260
PspN4I GGNNCC 3 cut(s) 337, 456, 504
PstNI CAGNNNCTG 1 cut(s) 473
PsyI GACNNNGTC 1 cut(s) 56
PvuII CAGCTG 2 cut(s) 227, 362
RsaI GTAC 4 cut(s) 337, 414, 436, 490
RsaNI GTAC 4 cut(s) 336, 413, 435, 489
RseI CAYNNNNRTG 2 cut(s) 262, 446
SaqAI TTAA 4 cut(s) 165, 279, 408, 425
SatI GCNGC 3 cut(s) 225, 297, 318
Sau3AI GATC 1 cut(s) 310
ScaI AGTACT 2 cut(s) 436, 490
SchI GAGTC 3 cut(s) 38, 103, 233
SduI GDGCHC 1 cut(s) 259
SfcI CTRYAG 1 cut(s) 187
SfuI TTCGAA 1 cut(s) 325
SmiMI CAYNNNNRTG 2 cut(s) 262, 446
Sse9I AATT 1 cut(s) 365
SsiI CCGC 1 cut(s) 235
SspMI CTAG 1 cut(s) 269
StyI CCWWGG 5 cut(s) 84, 209, 300, 339, 447
TaaI ACNGT 3 cut(s) 254, 434, 496
TaiI ACGT 3 cut(s) 174, 262, 278
TaqI TCGA 2 cut(s) 140, 325
TasI AATT 1 cut(s) 365
TatI WGTACW 2 cut(s) 434, 488
TfiI GAWTC 2 cut(s) 130, 470
Tru1I TTAA 4 cut(s) 165, 279, 408, 425
Tru9I TTAA 4 cut(s) 165, 279, 408, 425
TseI GCWGC 3 cut(s) 224, 296, 317
Tth111I GACNNNGTC 1 cut(s) 56
VneI GTGCAC 1 cut(s) 255
XapI RAATTY 1 cut(s) 365
XspI CTAG 1 cut(s) 269
ZrmI AGTACT 2 cut(s) 436, 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.