Rorug04G0445100

Pathogenesis-related genes transcriptional activator PTI5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0016284
Physical Location & Seq
Reverse (-)
60144368 .. 60146655
2288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0445100.1

Sequence Viewer

Length: 897 bp
ATGGGTGAGCTTCACTCCATGTCCATGGCTTACTCTAGCAGTAGCCTAGCCCTAGGAGGACCAGGACTAGGTCTAGGTCTAGGACTGGGAGGAGGGAATTGGGATAATTGCCACAACTTCAACCTTGGAGTTCTCAGCTCAGACAGGATGTCTTTAGTGATGGATGACTTTAATGCCGCACCACCATTTTCTTCTACTCTCGAGTCGGATTTCTCGACCGGTTACTTGGAAGACGCTTTGGTAGAATTCAGTGAGCGCTCGAAAAGAAGACGCATGCTGTTGTTTAACGATGACGAAATCAGAGACTCCACCGCTGTTGCTTCAAAGAGACGCTGGAATTCAGACTGGGAAGTGCTTGAGAGTTTTGACAGCATTAGCCAACTAATCACCTCTACTGGGCTATCAGGGGATGATCCTACAAGTATGAGTACTACACCAGTGAGCAGAATCTGTGGGGATGAGACCAACATAGTCGATACAAAGATGAACACAAGAGAAGAAGCTATTGATTCCTCGTCTTCATCTTCTTCTTGCAAAGAATCAGCCAACACCAACTCCATGGCTGCCGAGAAAGAGAACCTCTTTTCCGCTAATGCTCCTCTGGCTGCAGATGAGAAGAGAAATAAGAAGAGGCCGGTGATAACGTCGAGGGTGGTGTATCCCTTTGCGGTTGTGAAACCGGGAGGAGTAGAAGGTGACGTGACGCTAAACGACATCAACGAGAGGATTTCAATGCCACCAACGCGACCAGTACGACACCCCGTTGGGGACTTTGCGTGTCGGCCATGCGTATCTGATCCTGATGGTCCAGGACTTTCTGGTAAAGCTGTGGTGGCCCTTACCAGAATTCAAACACAGGGAAGAGGCACAATCACTATTATCAGAACCAAAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
AP2

Protein Analysis

298

Amino Acids

32.04

Weight (kDa)

5.06

Isoelectric Point (pI)

56.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016284)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08290
malus_domestica MD05G1306900.v1.1 MD10G1286300.v1.1
prunus_persica Prupe.4G055500_v2.0.a1
pyrus_communis pycom05g28380
rosa_chinensis RchiOBHm_Chr5g0009711
rosa_laevigata RLG00000031682
rosa_multiflora Rmu_sc0005805.1_g000005
rosa_roxburghii Rroxscaffold_1G00066500
rosa_rugosa Rorug04G0445100
rosa_samantha Rh5AG076600 Rh5BG071800 Rh5CG084400 Rh5DG072400
rosa_wichuraiana Rw5G007060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 745
AciI CCGC 4 cut(s) 177, 312, 588, 668
AclWI GGATC 2 cut(s) 407, 791
AcoI YGGCCR 1 cut(s) 782
AcsI RAATTY 3 cut(s) 245, 337, 846
AfaI GTAC 2 cut(s) 430, 753
AfeI AGCGCT 1 cut(s) 257
AfiI CCNNNNNNNGG 3 cut(s) 68, 396, 766
AgeI ACCGGT 1 cut(s) 218
AgsI TTSAA 4 cut(s) 121, 324, 732, 851
AhdI GACNNNNNGTC 1 cut(s) 148
AjiI CACGTC 1 cut(s) 700
AjnI CCWGG 2 cut(s) 61, 808
AloI GAACNNNNNNTCC 2 cut(s) 569, 601
AluBI AGCT 4 cut(s) 10, 138, 503, 827
AluI AGCT 4 cut(s) 10, 138, 503, 827
Alw26I GTCTC 3 cut(s) 297, 322, 455
AlwI GGATC 2 cut(s) 407, 791
AlwNI CAGNNNCTG 1 cut(s) 450
Ama87I CYCGRG 1 cut(s) 200
Aor51HI AGCGCT 1 cut(s) 257
AoxI GGCC 3 cut(s) 632, 782, 834
ApeKI GCWGC 2 cut(s) 563, 605
ApoI RAATTY 3 cut(s) 245, 337, 846
AsiGI ACCGGT 1 cut(s) 218
AspA2I CCTAGG 1 cut(s) 52
AspLEI GCGC 1 cut(s) 258
AspS9I GGNCC 3 cut(s) 59, 806, 835
AsuC2I CCSGG 1 cut(s) 681
AsuHPI GGTGA 4 cut(s) 17, 379, 649, 707
AvaI CYCGRG 1 cut(s) 200
AvaII GGWCC 2 cut(s) 59, 806
AvrII CCTAGG 1 cut(s) 52
BbsI GAAGAC 3 cut(s) 237, 274, 510
BbvI GCAGC 2 cut(s) 550, 592
BccI CCATC 2 cut(s) 154, 797
BciT130I CCWGG 2 cut(s) 63, 810
BciVI GTATCC 1 cut(s) 669
BcnI CCSGG 1 cut(s) 681
BcoDI GTCTC 3 cut(s) 297, 322, 455
BfaI CTAG 6 cut(s) 36, 47, 53, 68, 74, 80
BfmI CTRYAG 1 cut(s) 606
BfoI RGCGCY 1 cut(s) 259
BfuI GTATCC 1 cut(s) 669
BisI GCNGC 3 cut(s) 177, 564, 606
BlnI CCTAGG 1 cut(s) 52
BlsI GCNGC 3 cut(s) 178, 565, 607
BmcAI AGTACT 1 cut(s) 430
Bme1390I CCNGG 3 cut(s) 63, 681, 810
Bme18I GGWCC 2 cut(s) 59, 806
BmeRI GACNNNNNGTC 1 cut(s) 148
BmeT110I CYCGRG 1 cut(s) 200
BmgBI CACGTC 1 cut(s) 700
BmgT120I GGNCC 3 cut(s) 59, 806, 835
BmrFI CCNGG 3 cut(s) 63, 681, 810
BmrI ACTGGG 3 cut(s) 95, 355, 405
BmuI ACTGGG 3 cut(s) 95, 355, 405
BpiI GAAGAC 3 cut(s) 237, 274, 510
BplI GAGNNNNNCTC 1 cut(s) 31
BpuEI CTTGAG 1 cut(s) 377
BpuMI CCSGG 1 cut(s) 681
BsaI GGTCTC 1 cut(s) 455
BsaJI CCNNGG 4 cut(s) 24, 52, 124, 558
BsaWI WCCGGW 1 cut(s) 218
BsaXI ACNNNNNCTCC 2 cut(s) 539, 569
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 396, 766
Bse118I RCCGGY 2 cut(s) 218, 634
Bse1I ACTGG 5 cut(s) 90, 350, 400, 437, 749
BseBI CCWGG 2 cut(s) 63, 810
BseDI CCNNGG 4 cut(s) 24, 52, 124, 558
BseGI GGATG 4 cut(s) 153, 169, 415, 463
BseLI CCNNNNNNNGG 3 cut(s) 68, 396, 766
BseMII CTCAG 2 cut(s) 148, 153
BseNI ACTGG 5 cut(s) 90, 350, 400, 437, 749
BseRI GAGGAG 3 cut(s) 105, 588, 699
BseXI GCAGC 2 cut(s) 550, 592
Bsh1236I CGCG 1 cut(s) 745
Bsh1285I CGRYCG 1 cut(s) 219
BshFI GGCC 3 cut(s) 634, 784, 836
BshTI ACCGGT 1 cut(s) 218
BsiEI CGRYCG 1 cut(s) 219
BsiHKCI CYCGRG 1 cut(s) 200
BsiSI CCGG 3 cut(s) 219, 635, 680
BslFI GGGAC 1 cut(s) 782
BslI CCNNNNNNNGG 3 cut(s) 68, 396, 766
BsmAI GTCTC 3 cut(s) 297, 322, 455
BsmBI CGTCTC 1 cut(s) 322
BsmFI GGGAC 1 cut(s) 782
BsnI GGCC 3 cut(s) 634, 784, 836
Bso31I GGTCTC 1 cut(s) 455
BsoBI CYCGRG 1 cut(s) 200
Bsp143I GATC 2 cut(s) 412, 796
Bsp19I CCATGG 2 cut(s) 24, 558
BspACI CCGC 4 cut(s) 177, 312, 588, 668
BspANI GGCC 3 cut(s) 634, 784, 836
BspCNI CTCAG 2 cut(s) 147, 152
BspFNI CGCG 1 cut(s) 745
BspMAI CTGCAG 1 cut(s) 610
BspPI GGATC 2 cut(s) 407, 791
BspTNI GGTCTC 1 cut(s) 455
BsrFI RCCGGY 2 cut(s) 218, 634
BsrI ACTGG 5 cut(s) 90, 350, 400, 437, 749
BssAI RCCGGY 2 cut(s) 218, 634
BssECI CCNNGG 4 cut(s) 24, 52, 124, 558
BssMI GATC 2 cut(s) 412, 796
BssT1I CCWWGG 4 cut(s) 24, 52, 124, 558
Bst2UI CCWGG 2 cut(s) 63, 810
Bst6I CTCTTC 3 cut(s) 611, 623, 856
BstC8I GCNNGC 1 cut(s) 275
BstDEI CTNAG 2 cut(s) 134, 139
BstDSI CCRYGG 2 cut(s) 24, 558
BstF5I GGATG 4 cut(s) 153, 169, 415, 463
BstFNI CGCG 1 cut(s) 745
BstH2I RGCGCY 1 cut(s) 259
BstHHI GCGC 1 cut(s) 258
BstKTI GATC 2 cut(s) 415, 799
BstMAI GTCTC 3 cut(s) 297, 322, 455
BstMBI GATC 2 cut(s) 412, 796
BstMCI CGRYCG 1 cut(s) 219
BstMWI GCNNNNNNNGC 3 cut(s) 602, 742, 833
BstNI CCWGG 2 cut(s) 63, 810
BstNSI RCATGY 1 cut(s) 277
BstSCI CCNGG 3 cut(s) 61, 679, 808
BstSFI CTRYAG 1 cut(s) 606
BstUI CGCG 1 cut(s) 745
BstV1I GCAGC 2 cut(s) 550, 592
BstV2I GAAGAC 3 cut(s) 237, 274, 510
BstXI CCANNNNNNTGG 2 cut(s) 25, 559
BsuI GTATCC 1 cut(s) 669
BsuRI GGCC 3 cut(s) 634, 784, 836
BtgI CCRYGG 2 cut(s) 24, 558
BtrI CACGTC 1 cut(s) 700
BtsCI GGATG 4 cut(s) 153, 169, 415, 463
BtsIMutI CAGTG 2 cut(s) 256, 444
Cac8I GCNNGC 1 cut(s) 275
CaiI CAGNNNCTG 1 cut(s) 450
CfoI GCGC 1 cut(s) 258
Cfr10I RCCGGY 2 cut(s) 218, 634
Cfr13I GGNCC 3 cut(s) 59, 806, 835
CseI GACGC 4 cut(s) 242, 279, 339, 712
Csp6I GTAC 2 cut(s) 429, 752
CspAI ACCGGT 1 cut(s) 218
CspCI CAANNNNNGTGG 2 cut(s) 298, 333
CviAII CATG 5 cut(s) 19, 25, 274, 559, 786
CviQI GTAC 2 cut(s) 429, 752
DdeI CTNAG 2 cut(s) 134, 139
DpnI GATC 2 cut(s) 414, 798
DpnII GATC 2 cut(s) 412, 796
DriI GACNNNNNGTC 1 cut(s) 148
EaeI YGGCCR 1 cut(s) 782
Eam1104I CTCTTC 3 cut(s) 611, 623, 856
Eam1105I GACNNNNNGTC 1 cut(s) 148
EarI CTCTTC 3 cut(s) 611, 623, 856
Eco130I CCWWGG 4 cut(s) 24, 52, 124, 558
Eco31I GGTCTC 1 cut(s) 455
Eco47I GGWCC 2 cut(s) 59, 806
Eco47III AGCGCT 1 cut(s) 257
Eco88I CYCGRG 1 cut(s) 200
EcoRI GAATTC 3 cut(s) 245, 337, 846
EcoRII CCWGG 2 cut(s) 61, 808
EcoT14I CCWWGG 4 cut(s) 24, 52, 124, 558
ErhI CCWWGG 4 cut(s) 24, 52, 124, 558
Esp3I CGTCTC 1 cut(s) 322
FaeI CATG 5 cut(s) 22, 28, 277, 562, 789
FaiI YATR 7 cut(s) 20, 26, 275, 425, 470, 560, 787
FaqI GGGAC 1 cut(s) 782
FatI CATG 5 cut(s) 18, 24, 273, 558, 785
Fnu4HI GCNGC 3 cut(s) 177, 564, 606
FokI GGATG 4 cut(s) 160, 176, 422, 470
Fsp4HI GCNGC 3 cut(s) 177, 564, 606
FspBI CTAG 6 cut(s) 36, 47, 53, 68, 74, 80
GlaI GCGC 1 cut(s) 257
GluI GCNGC 3 cut(s) 177, 564, 606
HaeII RGCGCY 1 cut(s) 259
HaeIII GGCC 3 cut(s) 634, 784, 836
HapII CCGG 3 cut(s) 219, 635, 680
HgaI GACGC 4 cut(s) 242, 279, 339, 712
HhaI GCGC 1 cut(s) 258
Hin1II CATG 5 cut(s) 22, 28, 277, 562, 789
Hin6I GCGC 1 cut(s) 256
HinP1I GCGC 1 cut(s) 256
HinfI GANTC 5 cut(s) 203, 305, 447, 509, 539
HpaII CCGG 3 cut(s) 219, 635, 680
HphI GGTGA 4 cut(s) 17, 379, 649, 707
Hpy188I TCNGA 6 cut(s) 142, 208, 302, 343, 796, 884
Hpy188III TCNNGA 3 cut(s) 200, 214, 800
Hpy99I CGWCG 1 cut(s) 649
HpyAV CCTTC 1 cut(s) 686
HpyCH4IV ACGT 2 cut(s) 644, 699
HpyCH4V TGCA 2 cut(s) 534, 608
HpyF10VI GCNNNNNNNGC 3 cut(s) 602, 742, 833
HpyF3I CTNAG 2 cut(s) 134, 139
HpySE526I ACGT 2 cut(s) 644, 699
Hsp92II CATG 5 cut(s) 22, 28, 277, 562, 789
HspAI GCGC 1 cut(s) 256
Kzo9I GATC 2 cut(s) 412, 796
LmnI GCTCC 1 cut(s) 601
Lsp1109I GCAGC 2 cut(s) 550, 592
MaeI CTAG 6 cut(s) 36, 47, 53, 68, 74, 80
MaeII ACGT 2 cut(s) 644, 699
MaeIII GTNAC 3 cut(s) 221, 695, 700
MalI GATC 2 cut(s) 414, 798
MboI GATC 2 cut(s) 412, 796
MluCI AATT 5 cut(s) 97, 106, 245, 337, 846
MlyI GAGTC 2 cut(s) 212, 299
MmeI TCCRAC 1 cut(s) 186
MseI TTAA 3 cut(s) 171, 285, 895
MslI CAYNNNNRTG 1 cut(s) 23
MspA1I CMGCKG 1 cut(s) 314
MspI CCGG 3 cut(s) 219, 635, 680
MspR9I CCNGG 3 cut(s) 63, 681, 810
MvaI CCWGG 2 cut(s) 63, 810
MvnI CGCG 1 cut(s) 745
MwoI GCNNNNNNNGC 3 cut(s) 602, 742, 833
NciI CCSGG 1 cut(s) 681
NcoI CCATGG 2 cut(s) 24, 558
NdeII GATC 2 cut(s) 412, 796
NlaIII CATG 5 cut(s) 22, 28, 277, 562, 789
NmeAIII GCCGAG 1 cut(s) 592
NmuCI GTSAC 2 cut(s) 695, 700
NspI RCATGY 1 cut(s) 277
PaeI GCATGC 1 cut(s) 277
PaeR7I CTCGAG 1 cut(s) 200
PcsI WCGNNNNNNNCGW 2 cut(s) 212, 717
PfeI GAWTC 3 cut(s) 447, 509, 539
PflFI GACNNNGTC 1 cut(s) 69
PfoI TCCNGGA 1 cut(s) 808
PinAI ACCGGT 1 cut(s) 218
PkrI GCNGC 3 cut(s) 178, 565, 607
PleI GAGTC 2 cut(s) 211, 299
PpsI GAGTC 2 cut(s) 211, 299
Psp6I CCWGG 2 cut(s) 61, 808
PspGI CCWGG 2 cut(s) 61, 808
PspPI GGNCC 3 cut(s) 59, 806, 835
PstI CTGCAG 1 cut(s) 610
PstNI CAGNNNCTG 1 cut(s) 450
PsyI GACNNNGTC 1 cut(s) 69
RsaI GTAC 2 cut(s) 430, 753
RsaNI GTAC 2 cut(s) 429, 752
RseI CAYNNNNRTG 1 cut(s) 23
SaqAI TTAA 3 cut(s) 171, 285, 895
SatI GCNGC 3 cut(s) 177, 564, 606
Sau3AI GATC 2 cut(s) 412, 796
Sau96I GGNCC 3 cut(s) 59, 806, 835
ScaI AGTACT 1 cut(s) 430
SchI GAGTC 2 cut(s) 212, 299
ScrFI CCNGG 3 cut(s) 63, 681, 810
SfcI CTRYAG 1 cut(s) 606
Sfr274I CTCGAG 1 cut(s) 200
SinI GGWCC 2 cut(s) 59, 806
SlaI CTCGAG 1 cut(s) 200
SmiMI CAYNNNNRTG 1 cut(s) 23
SmlI CTYRAG 2 cut(s) 200, 356
SmoI CTYRAG 2 cut(s) 200, 356
SphI GCATGC 1 cut(s) 277
Sse9I AATT 5 cut(s) 97, 106, 245, 337, 846
SsiI CCGC 4 cut(s) 177, 312, 588, 668
SspMI CTAG 6 cut(s) 36, 47, 53, 68, 74, 80
StyD4I CCNGG 3 cut(s) 61, 679, 808
StyI CCWWGG 4 cut(s) 24, 52, 124, 558
TaiI ACGT 2 cut(s) 647, 702
TaqI TCGA 5 cut(s) 201, 215, 260, 474, 647
TasI AATT 5 cut(s) 97, 106, 245, 337, 846
TatI WGTACW 1 cut(s) 428
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 3 cut(s) 447, 509, 539
Tru1I TTAA 3 cut(s) 171, 285, 895
Tru9I TTAA 3 cut(s) 171, 285, 895
TscAI CASTG 2 cut(s) 256, 444
TseFI GTSAC 2 cut(s) 695, 700
TseI GCWGC 2 cut(s) 563, 605
Tsp45I GTSAC 2 cut(s) 695, 700
TspDTI ATGAA 2 cut(s) 500, 510
TspRI CASTG 2 cut(s) 256, 444
Tth111I GACNNNGTC 1 cut(s) 69
VpaK11BI GGWCC 2 cut(s) 59, 806
XapI RAATTY 3 cut(s) 245, 337, 846
XceI RCATGY 1 cut(s) 277
XhoI CTCGAG 1 cut(s) 200
XmaJI CCTAGG 1 cut(s) 52
XspI CTAG 6 cut(s) 36, 47, 53, 68, 74, 80
ZrmI AGTACT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.