Rh5CG084400

Pathogenesis-related genes transcriptional activator PTI5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0016284
Physical Location & Seq
Forward (+)
6525204 .. 6526254
1051 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG084400.1

Sequence Viewer

Length: 510 bp
ATGGTTTTAGCTTCCCAACATGAGCTTCCATTAAATGAGAACGACTCACAAGACATGGTCATATGCCAAGCTCTAAACGAAGCCATGGCTCTGAATCACTCATCCGTGCCTGAAACACACCAAATCCCGAATCACCAATCGACTTCCAACGGCCTCAAACCCGTAAAGAACCTCGGAAAGAAGCACTATAGAGGCGTGAGGCGTCGTCCATGGGGTAAATACGCAGCTGAAATCCGCGACTCTGCGCGACACGGTGCACGTGTATGGCTAGGCACGTTTAACACGGCCGAAGAAGCTGCCTTGGCGTATGATCAAGCTGCTTTTCGAATGAGAGGTAGTAAGGCCATACTCAACTTCCCAGCTGAATTTGTTGCTTCGTTGTCAATTGAAAGAGTTCAGCCAAGTTTTAGTGTACCCAGCAATACTAGTACCACTACGGAGGCACCAAAAATATCAGAGTCTGAGAGGAACACAACTACTACGATAAAGGCACGACATATGCAGCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
AP2

Protein Analysis

169

Amino Acids

18.84

Weight (kDa)

9.6

Isoelectric Point (pI)

49.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 62 - 113 2e-16 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016284)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08290
malus_domestica MD05G1306900.v1.1 MD10G1286300.v1.1
prunus_persica Prupe.4G055500_v2.0.a1
pyrus_communis pycom05g28380
rosa_chinensis RchiOBHm_Chr5g0009711
rosa_laevigata RLG00000031682
rosa_multiflora Rmu_sc0005805.1_g000005
rosa_roxburghii Rroxscaffold_1G00066500
rosa_rugosa Rorug04G0445100
rosa_samantha Rh5AG076600 Rh5BG071800 Rh5CG084400 Rh5DG072400
rosa_wichuraiana Rw5G007060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 442
AccII CGCG 2 cut(s) 237, 247
AciI CCGC 1 cut(s) 235
AcoI YGGCCR 1 cut(s) 285
AcsI RAATTY 1 cut(s) 365
AcvI CACGTG 1 cut(s) 260
AcyI GRCGYC 1 cut(s) 202
AfaI GTAC 2 cut(s) 414, 430
AflIII ACRYGT 1 cut(s) 259
AgsI TTSAA 1 cut(s) 389
AhlI ACTAGT 1 cut(s) 425
AjuI GAANNNNNNNTTGG 2 cut(s) 9, 41
AluBI AGCT 7 cut(s) 11, 25, 71, 227, 296, 317, 362
AluI AGCT 7 cut(s) 11, 25, 71, 227, 296, 317, 362
Alw21I GWGCWC 1 cut(s) 259
Alw44I GTGCAC 1 cut(s) 255
AlwNI CAGNNNCTG 1 cut(s) 461
AoxI GGCC 3 cut(s) 151, 285, 342
ApaLI GTGCAC 1 cut(s) 255
ApeKI GCWGC 4 cut(s) 224, 296, 317, 502
ApoI RAATTY 1 cut(s) 365
Asp700I GAANNNNTTC 1 cut(s) 393
AspLEI GCGC 1 cut(s) 247
AsuHPI GGTGA 1 cut(s) 125
AsuII TTCGAA 1 cut(s) 325
BaeGI GKGCMC 1 cut(s) 259
BanI GGYRCC 1 cut(s) 442
BbrPI CACGTG 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 259
BbvI GCAGC 3 cut(s) 236, 283, 304
BceAI ACGGC 2 cut(s) 166, 300
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BclI TGATCA 1 cut(s) 310
BcuI ACTAGT 1 cut(s) 425
BfaI CTAG 2 cut(s) 269, 426
BfmI CTRYAG 1 cut(s) 187
BisI GCNGC 4 cut(s) 225, 297, 318, 503
BlsI GCNGC 4 cut(s) 226, 298, 319, 504
BmiI GGNNCC 1 cut(s) 444
BplI GAGNNNNNCTC 2 cut(s) 29, 61
Bpu14I TTCGAA 1 cut(s) 325
BsaAI YACGTR 1 cut(s) 260
BsaHI GRCGYC 1 cut(s) 202
BsaJI CCNNGG 4 cut(s) 84, 172, 209, 300
BseDI CCNNGG 4 cut(s) 84, 172, 209, 300
BseGI GGATG 1 cut(s) 101
BseMII CTCAG 1 cut(s) 453
BseSI GKGCMC 1 cut(s) 259
BseX3I CGGCCG 1 cut(s) 285
BseXI GCAGC 3 cut(s) 236, 283, 304
BseYI CCCAGC 2 cut(s) 358, 416
Bsh1236I CGCG 2 cut(s) 237, 247
Bsh1285I CGRYCG 1 cut(s) 288
BshFI GGCC 3 cut(s) 153, 287, 344
BshNI GGYRCC 1 cut(s) 442
BsiEI CGRYCG 1 cut(s) 288
BsiHKAI GWGCWC 1 cut(s) 259
BsnI GGCC 3 cut(s) 153, 287, 344
Bsp119I TTCGAA 1 cut(s) 325
Bsp1286I GDGCHC 1 cut(s) 259
Bsp143I GATC 1 cut(s) 310
Bsp19I CCATGG 2 cut(s) 84, 209
BspACI CCGC 1 cut(s) 235
BspANI GGCC 3 cut(s) 153, 287, 344
BspCNI CTCAG 1 cut(s) 454
BspFNI CGCG 2 cut(s) 237, 247
BspLI GGNNCC 1 cut(s) 444
BspT104I TTCGAA 1 cut(s) 325
BspT107I GGYRCC 1 cut(s) 442
BssECI CCNNGG 4 cut(s) 84, 172, 209, 300
BssMI GATC 1 cut(s) 310
BssNI GRCGYC 1 cut(s) 202
BssT1I CCWWGG 3 cut(s) 84, 209, 300
Bst4CI ACNGT 1 cut(s) 254
BstACI GRCGYC 1 cut(s) 202
BstBAI YACGTR 1 cut(s) 260
BstBI TTCGAA 1 cut(s) 325
BstDEI CTNAG 1 cut(s) 462
BstDSI CCRYGG 2 cut(s) 84, 209
BstF5I GGATG 1 cut(s) 101
BstFNI CGCG 2 cut(s) 237, 247
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 1 cut(s) 313
BstMBI GATC 1 cut(s) 310
BstMCI CGRYCG 1 cut(s) 288
BstMWI GCNNNNNNNGC 2 cut(s) 293, 302
BstSFI CTRYAG 1 cut(s) 187
BstSLI GKGCMC 1 cut(s) 259
BstUI CGCG 2 cut(s) 237, 247
BstV1I GCAGC 3 cut(s) 236, 283, 304
BstZI CGGCCG 1 cut(s) 285
BsuRI GGCC 3 cut(s) 153, 287, 344
BtgI CCRYGG 2 cut(s) 84, 209
BtsCI GGATG 1 cut(s) 101
CaiI CAGNNNCTG 1 cut(s) 461
CfoI GCGC 1 cut(s) 247
CseI GACGC 1 cut(s) 191
Csp6I GTAC 2 cut(s) 413, 429
CviAII CATG 4 cut(s) 20, 55, 85, 210
CviQI GTAC 2 cut(s) 413, 429
DdeI CTNAG 1 cut(s) 462
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
EaeI YGGCCR 1 cut(s) 285
EagI CGGCCG 1 cut(s) 285
EclXI CGGCCG 1 cut(s) 285
Eco130I CCWWGG 3 cut(s) 84, 209, 300
Eco52I CGGCCG 1 cut(s) 285
Eco72I CACGTG 1 cut(s) 260
EcoT14I CCWWGG 3 cut(s) 84, 209, 300
ErhI CCWWGG 3 cut(s) 84, 209, 300
FaeI CATG 4 cut(s) 23, 58, 88, 213
FatI CATG 4 cut(s) 19, 54, 84, 209
FauNDI CATATG 2 cut(s) 62, 498
FbaI TGATCA 1 cut(s) 310
Fnu4HI GCNGC 4 cut(s) 225, 297, 318, 503
FokI GGATG 1 cut(s) 88
Fsp4HI GCNGC 4 cut(s) 225, 297, 318, 503
FspBI CTAG 2 cut(s) 269, 426
GlaI GCGC 1 cut(s) 246
GluI GCNGC 4 cut(s) 225, 297, 318, 503
GsaI CCCAGC 2 cut(s) 362, 420
HaeIII GGCC 3 cut(s) 153, 287, 344
HgaI GACGC 1 cut(s) 191
HhaI GCGC 1 cut(s) 247
Hin1I GRCGYC 1 cut(s) 202
Hin1II CATG 4 cut(s) 23, 58, 88, 213
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HinfI GANTC 5 cut(s) 44, 94, 130, 239, 458
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 2 cut(s) 257, 413
Hpy188I TCNGA 4 cut(s) 93, 176, 457, 463
Hpy188III TCNNGA 1 cut(s) 127
Hpy8I GTNNAC 2 cut(s) 257, 413
Hpy99I CGWCG 1 cut(s) 207
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4IV ACGT 2 cut(s) 259, 275
HpyCH4V TGCA 2 cut(s) 257, 502
HpyF10VI GCNNNNNNNGC 2 cut(s) 293, 302
HpyF3I CTNAG 1 cut(s) 462
HpySE526I ACGT 2 cut(s) 259, 275
Hsp92I GRCGYC 1 cut(s) 202
Hsp92II CATG 4 cut(s) 23, 58, 88, 213
HspAI GCGC 1 cut(s) 245
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 1 cut(s) 310
LpnPI CCDG 3 cut(s) 123, 372, 430
Lsp1109I GCAGC 3 cut(s) 236, 283, 304
MaeI CTAG 2 cut(s) 269, 426
MaeII ACGT 2 cut(s) 259, 275
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 1 cut(s) 302
MfeI CAATTG 1 cut(s) 384
MhlI GDGCHC 1 cut(s) 259
MluCI AATT 2 cut(s) 365, 384
MlyI GAGTC 3 cut(s) 38, 233, 467
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 7 cut(s) 164, 182, 185, 192, 326, 433, 459
MroXI GAANNNNTTC 1 cut(s) 393
MseI TTAA 2 cut(s) 32, 279
MslI CAYNNNNRTG 1 cut(s) 262
MspA1I CMGCKG 2 cut(s) 227, 362
MunI CAATTG 1 cut(s) 384
MvnI CGCG 2 cut(s) 237, 247
MwoI GCNNNNNNNGC 2 cut(s) 293, 302
NcoI CCATGG 2 cut(s) 84, 209
NdeI CATATG 2 cut(s) 62, 498
NdeII GATC 1 cut(s) 310
NlaIII CATG 4 cut(s) 23, 58, 88, 213
NlaIV GGNNCC 1 cut(s) 444
NspV TTCGAA 1 cut(s) 325
PdmI GAANNNNTTC 1 cut(s) 393
PfeI GAWTC 2 cut(s) 94, 130
PflFI GACNNNGTC 1 cut(s) 56
PkrI GCNGC 4 cut(s) 226, 298, 319, 504
PleI GAGTC 3 cut(s) 38, 233, 466
PmaCI CACGTG 1 cut(s) 260
PmlI CACGTG 1 cut(s) 260
PpsI GAGTC 3 cut(s) 38, 233, 466
Ppu21I YACGTR 1 cut(s) 260
PspCI CACGTG 1 cut(s) 260
PspFI CCCAGC 2 cut(s) 358, 416
PspN4I GGNNCC 1 cut(s) 444
PstNI CAGNNNCTG 1 cut(s) 461
PsyI GACNNNGTC 1 cut(s) 56
PvuII CAGCTG 2 cut(s) 227, 362
RsaI GTAC 2 cut(s) 414, 430
RsaNI GTAC 2 cut(s) 413, 429
RseI CAYNNNNRTG 1 cut(s) 262
SaqAI TTAA 2 cut(s) 32, 279
SatI GCNGC 4 cut(s) 225, 297, 318, 503
Sau3AI GATC 1 cut(s) 310
SchI GAGTC 3 cut(s) 38, 233, 467
SduI GDGCHC 1 cut(s) 259
SfcI CTRYAG 1 cut(s) 187
SfuI TTCGAA 1 cut(s) 325
SmiMI CAYNNNNRTG 1 cut(s) 262
SpeI ACTAGT 1 cut(s) 425
Sse9I AATT 2 cut(s) 365, 384
SsiI CCGC 1 cut(s) 235
SspMI CTAG 2 cut(s) 269, 426
StyI CCWWGG 3 cut(s) 84, 209, 300
TaaI ACNGT 1 cut(s) 254
TaiI ACGT 2 cut(s) 262, 278
TaqI TCGA 2 cut(s) 140, 325
TasI AATT 2 cut(s) 365, 384
TfiI GAWTC 2 cut(s) 94, 130
Tru1I TTAA 2 cut(s) 32, 279
Tru9I TTAA 2 cut(s) 32, 279
TseI GCWGC 4 cut(s) 224, 296, 317, 502
TspGWI ACGGA 2 cut(s) 94, 452
Tth111I GACNNNGTC 1 cut(s) 56
VneI GTGCAC 1 cut(s) 255
XapI RAATTY 1 cut(s) 365
XmnI GAANNNNTTC 1 cut(s) 393
XspI CTAG 2 cut(s) 269, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.