Rroxscaffold_1G00066500

Pathogenesis-related genes transcriptional activator PTI5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0016284
Physical Location & Seq
Reverse (-)
88033692 .. 88034201
510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00066500.1

Sequence Viewer

Length: 510 bp
ATGGTTTTAGCTTCCCAACATGAGCTTCCATTAAATGAGAACGATTCACAAGACATGGTCATATGCCAAGCTCTAAACGAAGCCATGGCTCTAAACCATTCATCCTTGCCTGAAACTCACCAAATCCCGAATCACCAATCGACTTCCAACGGCCTCAAACCCGTTAAGAACCTCGGAAACAAGCACTATAGAGGCGTGAGGCGTCGTCCATGGGGTAAATACGCAGCTGAAATCCGCGACTCTGCGCGACACGGTGCACGTTTATGGCTAGGCACGTTTAACACTGCCGAAGAAGCTGCCTTGGCATATGATCAAGCTGCTTTTCGAATGAGAGGTAGTAAGGCCATACTCAACTTCCCAGCTGAATTTGTTGCTTCGTTGTCAATTGAAAGAGTTCAGCCAAGTTTTAGTGTACCCAGCAATACTAGTACTACTACGGAGGCACCAAAAATATCAGAGTCTGAGAGGAACACAACTACTACGGTGAAGGCACGACATATGCACCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
AP2

Protein Analysis

169

Amino Acids

18.85

Weight (kDa)

9.46

Isoelectric Point (pI)

56.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 62 - 113 3.8e-16 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016284)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08290
malus_domestica MD05G1306900.v1.1 MD10G1286300.v1.1
prunus_persica Prupe.4G055500_v2.0.a1
pyrus_communis pycom05g28380
rosa_chinensis RchiOBHm_Chr5g0009711
rosa_laevigata RLG00000031682
rosa_multiflora Rmu_sc0005805.1_g000005
rosa_roxburghii Rroxscaffold_1G00066500
rosa_rugosa Rorug04G0445100
rosa_samantha Rh5AG076600 Rh5BG071800 Rh5CG084400 Rh5DG072400
rosa_wichuraiana Rw5G007060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 442
AccII CGCG 2 cut(s) 237, 247
AciI CCGC 1 cut(s) 235
AcsI RAATTY 1 cut(s) 365
AcyI GRCGYC 1 cut(s) 202
AfaI GTAC 2 cut(s) 414, 430
AgsI TTSAA 1 cut(s) 389
AhlI ACTAGT 1 cut(s) 425
AjuI GAANNNNNNNTTGG 2 cut(s) 9, 41
AluBI AGCT 7 cut(s) 11, 25, 71, 227, 296, 317, 362
AluI AGCT 7 cut(s) 11, 25, 71, 227, 296, 317, 362
Alw21I GWGCWC 1 cut(s) 259
Alw44I GTGCAC 1 cut(s) 255
AlwNI CAGNNNCTG 1 cut(s) 461
AoxI GGCC 2 cut(s) 151, 342
ApaLI GTGCAC 1 cut(s) 255
ApeKI GCWGC 3 cut(s) 224, 296, 317
ApoI RAATTY 1 cut(s) 365
Asp700I GAANNNNTTC 1 cut(s) 393
AspLEI GCGC 1 cut(s) 247
AsuHPI GGTGA 3 cut(s) 110, 125, 496
AsuII TTCGAA 1 cut(s) 325
BaeGI GKGCMC 1 cut(s) 259
BanI GGYRCC 1 cut(s) 442
Bbv12I GWGCWC 1 cut(s) 259
BbvI GCAGC 3 cut(s) 236, 283, 304
BceAI ACGGC 1 cut(s) 166
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BclI TGATCA 1 cut(s) 310
BcuI ACTAGT 1 cut(s) 425
BfaI CTAG 2 cut(s) 269, 426
BfmI CTRYAG 1 cut(s) 187
BisI GCNGC 3 cut(s) 225, 297, 318
BlsI GCNGC 3 cut(s) 226, 298, 319
BmcAI AGTACT 1 cut(s) 430
BmiI GGNNCC 1 cut(s) 444
Bpu14I TTCGAA 1 cut(s) 325
BsaHI GRCGYC 1 cut(s) 202
BsaJI CCNNGG 4 cut(s) 84, 172, 209, 300
BseDI CCNNGG 4 cut(s) 84, 172, 209, 300
BseGI GGATG 1 cut(s) 101
BseMII CTCAG 1 cut(s) 453
BseSI GKGCMC 1 cut(s) 259
BseXI GCAGC 3 cut(s) 236, 283, 304
BseYI CCCAGC 2 cut(s) 358, 416
Bsh1236I CGCG 2 cut(s) 237, 247
BshFI GGCC 2 cut(s) 153, 344
BshNI GGYRCC 1 cut(s) 442
BsiHKAI GWGCWC 1 cut(s) 259
BsnI GGCC 2 cut(s) 153, 344
Bsp119I TTCGAA 1 cut(s) 325
Bsp1286I GDGCHC 1 cut(s) 259
Bsp143I GATC 1 cut(s) 310
Bsp19I CCATGG 2 cut(s) 84, 209
BspACI CCGC 1 cut(s) 235
BspANI GGCC 2 cut(s) 153, 344
BspCNI CTCAG 1 cut(s) 454
BspFNI CGCG 2 cut(s) 237, 247
BspLI GGNNCC 1 cut(s) 444
BspT104I TTCGAA 1 cut(s) 325
BspT107I GGYRCC 1 cut(s) 442
BssECI CCNNGG 4 cut(s) 84, 172, 209, 300
BssMI GATC 1 cut(s) 310
BssNI GRCGYC 1 cut(s) 202
BssT1I CCWWGG 3 cut(s) 84, 209, 300
Bst4CI ACNGT 3 cut(s) 254, 484, 506
BstACI GRCGYC 1 cut(s) 202
BstBI TTCGAA 1 cut(s) 325
BstDEI CTNAG 1 cut(s) 462
BstDSI CCRYGG 2 cut(s) 84, 209
BstF5I GGATG 1 cut(s) 101
BstFNI CGCG 2 cut(s) 237, 247
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 1 cut(s) 313
BstMBI GATC 1 cut(s) 310
BstMWI GCNNNNNNNGC 2 cut(s) 293, 302
BstSFI CTRYAG 1 cut(s) 187
BstSLI GKGCMC 1 cut(s) 259
BstUI CGCG 2 cut(s) 237, 247
BstV1I GCAGC 3 cut(s) 236, 283, 304
BsuRI GGCC 2 cut(s) 153, 344
BtgI CCRYGG 2 cut(s) 84, 209
BtsCI GGATG 1 cut(s) 101
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 282
CaiI CAGNNNCTG 1 cut(s) 461
CfoI GCGC 1 cut(s) 247
CseI GACGC 1 cut(s) 191
Csp6I GTAC 2 cut(s) 413, 429
CviAII CATG 4 cut(s) 20, 55, 85, 210
CviQI GTAC 2 cut(s) 413, 429
DdeI CTNAG 1 cut(s) 462
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
Eco130I CCWWGG 3 cut(s) 84, 209, 300
EcoT14I CCWWGG 3 cut(s) 84, 209, 300
ErhI CCWWGG 3 cut(s) 84, 209, 300
FaeI CATG 4 cut(s) 23, 58, 88, 213
FatI CATG 4 cut(s) 19, 54, 84, 209
FauNDI CATATG 3 cut(s) 62, 307, 498
FbaI TGATCA 1 cut(s) 310
Fnu4HI GCNGC 3 cut(s) 225, 297, 318
FokI GGATG 1 cut(s) 88
Fsp4HI GCNGC 3 cut(s) 225, 297, 318
FspBI CTAG 2 cut(s) 269, 426
GlaI GCGC 1 cut(s) 246
GluI GCNGC 3 cut(s) 225, 297, 318
GsaI CCCAGC 2 cut(s) 362, 420
HaeIII GGCC 2 cut(s) 153, 344
HgaI GACGC 1 cut(s) 191
HhaI GCGC 1 cut(s) 247
Hin1I GRCGYC 1 cut(s) 202
Hin1II CATG 4 cut(s) 23, 58, 88, 213
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HinfI GANTC 4 cut(s) 44, 130, 239, 458
HphI GGTGA 3 cut(s) 110, 125, 496
Hpy166II GTNNAC 2 cut(s) 257, 413
Hpy188I TCNGA 3 cut(s) 176, 457, 463
Hpy188III TCNNGA 1 cut(s) 127
Hpy8I GTNNAC 2 cut(s) 257, 413
Hpy99I CGWCG 1 cut(s) 207
HpyAV CCTTC 1 cut(s) 481
HpyCH4III ACNGT 3 cut(s) 254, 484, 506
HpyCH4IV ACGT 2 cut(s) 259, 275
HpyCH4V TGCA 2 cut(s) 257, 502
HpyF10VI GCNNNNNNNGC 2 cut(s) 293, 302
HpyF3I CTNAG 1 cut(s) 462
HpySE526I ACGT 2 cut(s) 259, 275
Hsp92I GRCGYC 1 cut(s) 202
Hsp92II CATG 4 cut(s) 23, 58, 88, 213
HspAI GCGC 1 cut(s) 245
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 1 cut(s) 310
LpnPI CCDG 3 cut(s) 123, 372, 430
Lsp1109I GCAGC 3 cut(s) 236, 283, 304
MaeI CTAG 2 cut(s) 269, 426
MaeII ACGT 2 cut(s) 259, 275
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 1 cut(s) 302
MfeI CAATTG 1 cut(s) 384
MhlI GDGCHC 1 cut(s) 259
MluCI AATT 2 cut(s) 365, 384
MlyI GAGTC 2 cut(s) 233, 467
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 7 cut(s) 164, 182, 185, 192, 326, 433, 459
MroXI GAANNNNTTC 1 cut(s) 393
MseI TTAA 3 cut(s) 32, 165, 279
MslI CAYNNNNRTG 1 cut(s) 262
MspA1I CMGCKG 2 cut(s) 227, 362
MunI CAATTG 1 cut(s) 384
MvnI CGCG 2 cut(s) 237, 247
MwoI GCNNNNNNNGC 2 cut(s) 293, 302
NcoI CCATGG 2 cut(s) 84, 209
NdeI CATATG 3 cut(s) 62, 307, 498
NdeII GATC 1 cut(s) 310
NlaIII CATG 4 cut(s) 23, 58, 88, 213
NlaIV GGNNCC 1 cut(s) 444
NspV TTCGAA 1 cut(s) 325
PdmI GAANNNNTTC 1 cut(s) 393
PfeI GAWTC 2 cut(s) 44, 130
PflFI GACNNNGTC 1 cut(s) 56
PkrI GCNGC 3 cut(s) 226, 298, 319
PleI GAGTC 2 cut(s) 233, 466
PpsI GAGTC 2 cut(s) 233, 466
PspFI CCCAGC 2 cut(s) 358, 416
PspN4I GGNNCC 1 cut(s) 444
PstNI CAGNNNCTG 1 cut(s) 461
PsyI GACNNNGTC 1 cut(s) 56
PvuII CAGCTG 2 cut(s) 227, 362
RsaI GTAC 2 cut(s) 414, 430
RsaNI GTAC 2 cut(s) 413, 429
RseI CAYNNNNRTG 1 cut(s) 262
SaqAI TTAA 3 cut(s) 32, 165, 279
SatI GCNGC 3 cut(s) 225, 297, 318
Sau3AI GATC 1 cut(s) 310
ScaI AGTACT 1 cut(s) 430
SchI GAGTC 2 cut(s) 233, 467
SduI GDGCHC 1 cut(s) 259
SfcI CTRYAG 1 cut(s) 187
SfuI TTCGAA 1 cut(s) 325
SmiMI CAYNNNNRTG 1 cut(s) 262
SpeI ACTAGT 1 cut(s) 425
Sse9I AATT 2 cut(s) 365, 384
SsiI CCGC 1 cut(s) 235
SspMI CTAG 2 cut(s) 269, 426
StyI CCWWGG 3 cut(s) 84, 209, 300
TaaI ACNGT 3 cut(s) 254, 484, 506
TaiI ACGT 2 cut(s) 262, 278
TaqI TCGA 2 cut(s) 140, 325
TasI AATT 2 cut(s) 365, 384
TatI WGTACW 1 cut(s) 428
TfiI GAWTC 2 cut(s) 44, 130
Tru1I TTAA 3 cut(s) 32, 165, 279
Tru9I TTAA 3 cut(s) 32, 165, 279
TscAI CASTG 1 cut(s) 289
TseI GCWGC 3 cut(s) 224, 296, 317
TspDTI ATGAA 1 cut(s) 90
TspGWI ACGGA 1 cut(s) 452
TspRI CASTG 1 cut(s) 289
Tth111I GACNNNGTC 1 cut(s) 56
VneI GTGCAC 1 cut(s) 255
XapI RAATTY 1 cut(s) 365
XmnI GAANNNNTTC 1 cut(s) 393
XspI CTAG 2 cut(s) 269, 426
ZrmI AGTACT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.