MD10G1286300.v1.1

Pathogenesis-related genes transcriptional activator PTI5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0016284
Physical Location & Seq
Reverse (-)
37571420 .. 37572034
615 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1286300.v1.1.491

Sequence Viewer

Length: 615 bp
ATGAGAAGGCAACTTGGGGAGGCAGAACTGACTAAGGAAGCTATGGCTTTAGCCTCCTCACAACAAAATGAGCTCCCATTGAATGAGAATGACTCACAAGACATGGTCATATACCATGTCCTAAATGAAGCCACTTCTCTCACCCCCTCACTATTGCCACAGAGGCACCACATCCATCGTCAACCAAATCGCCTGGAACCCACCAAGAACGTCGGAAAAAAGCACTATAGAGGCGTGAGGAGGCGTCCGTGGGGCAAGTACGCAGCTGAAATCCGTGACTCTGCAAGACAAGGTGCGCGTGTATGGCTAGGAACATTTAACACAGCCGAAGAAGCTGCCTTGGCATATGATCGAGCAGCTTTTCGAATGCGCGGTACTAAGGCCATGCTTAATTTCCCAGCTGAAATTGTGGCTGCATCATCTCCACCAACATCATCAGTTCATAGATTCAGGCCAAGTTTTAATATACCTTGCAGCTTAAATAGTAAAAACAGTACTACTACTTCAGACTCAAGTGGAAGTTCAAGTATGCTTTCAGTTGGGACGCCAAGATCAGAATCTGAGAGTAAATTAAGTGCGGTGGAGGTACAAAATATGGAGGGTCAGATTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
AP2

Protein Analysis

205

Amino Acids

22.67

Weight (kDa)

9.71

Isoelectric Point (pI)

59.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 75 - 125 2e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016284)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08290
malus_domestica MD05G1306900.v1.1 MD10G1286300.v1.1
prunus_persica Prupe.4G055500_v2.0.a1
pyrus_communis pycom05g28380
rosa_chinensis RchiOBHm_Chr5g0009711
rosa_laevigata RLG00000031682
rosa_multiflora Rmu_sc0005805.1_g000005
rosa_roxburghii Rroxscaffold_1G00066500
rosa_rugosa Rorug04G0445100
rosa_samantha Rh5AG076600 Rh5BG071800 Rh5CG084400 Rh5DG072400
rosa_wichuraiana Rw5G007060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 165
AccII CGCG 2 cut(s) 298, 372
AciI CCGC 2 cut(s) 372, 578
AcuI CTGAAG 1 cut(s) 489
AcyI GRCGYC 2 cut(s) 244, 545
AfaI GTAC 4 cut(s) 260, 376, 496, 588
AgsI TTSAA 2 cut(s) 82, 525
AjnI CCWGG 1 cut(s) 192
AluBI AGCT 7 cut(s) 41, 73, 266, 335, 359, 401, 477
AluI AGCT 7 cut(s) 41, 73, 266, 335, 359, 401, 477
Alw21I GWGCWC 1 cut(s) 75
AlwNI CAGNNNCTG 1 cut(s) 560
AoxI GGCC 2 cut(s) 381, 452
ApeKI GCWGC 5 cut(s) 263, 335, 356, 413, 474
AspLEI GCGC 2 cut(s) 298, 372
AsuHPI GGTGA 1 cut(s) 133
AsuII TTCGAA 1 cut(s) 364
BanI GGYRCC 1 cut(s) 165
BanII GRGCYC 1 cut(s) 75
BarI GAAGNNNNNNTAC 2 cut(s) 487, 519
Bbv12I GWGCWC 1 cut(s) 75
BbvI GCAGC 5 cut(s) 275, 322, 368, 400, 486
BccI CCATC 1 cut(s) 183
BcgI CGANNNNNNTGC 2 cut(s) 317, 351
BciT130I CCWGG 1 cut(s) 194
BfaI CTAG 2 cut(s) 308, 613
BfmI CTRYAG 1 cut(s) 226
BglI GCCNNNNNGGC 1 cut(s) 163
BisI GCNGC 5 cut(s) 264, 336, 357, 414, 475
BlsI GCNGC 5 cut(s) 265, 337, 358, 415, 476
BmcAI AGTACT 1 cut(s) 496
Bme1390I CCNGG 1 cut(s) 194
BmiI GGNNCC 2 cut(s) 167, 198
BmrFI CCNGG 1 cut(s) 194
BmsI GCATC 1 cut(s) 425
BplI GAGNNNNNCTC 2 cut(s) 77, 109
Bpu14I TTCGAA 1 cut(s) 364
BpuEI CTTGAG 1 cut(s) 496
BsaBI GATNNNNATC 1 cut(s) 556
BsaHI GRCGYC 2 cut(s) 244, 545
BsaJI CCNNGG 2 cut(s) 248, 339
Bse8I GATNNNNATC 1 cut(s) 556
BseBI CCWGG 1 cut(s) 194
BseDI CCNNGG 2 cut(s) 248, 339
BseGI GGATG 1 cut(s) 171
BseJI GATNNNNATC 1 cut(s) 556
BseMII CTCAG 1 cut(s) 552
BseRI GAGGAG 2 cut(s) 46, 253
BseXI GCAGC 5 cut(s) 275, 322, 368, 400, 486
BseYI CCCAGC 1 cut(s) 397
Bsh1236I CGCG 2 cut(s) 298, 372
BshFI GGCC 2 cut(s) 383, 454
BshNI GGYRCC 1 cut(s) 165
BsiHKAI GWGCWC 1 cut(s) 75
BslFI GGGAC 1 cut(s) 556
BsmFI GGGAC 1 cut(s) 556
BsmI GAATGC 1 cut(s) 372
BsnI GGCC 2 cut(s) 383, 454
Bsp119I TTCGAA 1 cut(s) 364
Bsp1286I GDGCHC 1 cut(s) 75
Bsp143I GATC 2 cut(s) 349, 551
BspACI CCGC 2 cut(s) 372, 578
BspANI GGCC 2 cut(s) 383, 454
BspCNI CTCAG 1 cut(s) 553
BspFNI CGCG 2 cut(s) 298, 372
BspLI GGNNCC 2 cut(s) 167, 198
BspT104I TTCGAA 1 cut(s) 364
BspT107I GGYRCC 1 cut(s) 165
BssECI CCNNGG 2 cut(s) 248, 339
BssMI GATC 2 cut(s) 349, 551
BssNI GRCGYC 2 cut(s) 244, 545
BssT1I CCWWGG 1 cut(s) 339
Bst2UI CCWGG 1 cut(s) 194
Bst4CI ACNGT 1 cut(s) 494
BstACI GRCGYC 2 cut(s) 244, 545
BstBI TTCGAA 1 cut(s) 364
BstDEI CTNAG 3 cut(s) 33, 378, 561
BstDSI CCRYGG 1 cut(s) 248
BstF5I GGATG 1 cut(s) 171
BstFNI CGCG 2 cut(s) 298, 372
BstHHI GCGC 2 cut(s) 298, 372
BstKTI GATC 2 cut(s) 352, 554
BstMBI GATC 2 cut(s) 349, 551
BstMWI GCNNNNNNNGC 4 cut(s) 163, 304, 332, 341
BstNI CCWGG 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 192
BstSFI CTRYAG 1 cut(s) 226
BstUI CGCG 2 cut(s) 298, 372
BstV1I GCAGC 5 cut(s) 275, 322, 368, 400, 486
BsuRI GGCC 2 cut(s) 383, 454
BtgI CCRYGG 1 cut(s) 248
BtsCI GGATG 1 cut(s) 171
CaiI CAGNNNCTG 1 cut(s) 560
CfoI GCGC 2 cut(s) 298, 372
CseI GACGC 2 cut(s) 233, 553
Csp6I GTAC 4 cut(s) 259, 375, 495, 587
CviAII CATG 3 cut(s) 103, 116, 385
CviQI GTAC 4 cut(s) 259, 375, 495, 587
DdeI CTNAG 3 cut(s) 33, 378, 561
DpnI GATC 2 cut(s) 351, 553
DpnII GATC 2 cut(s) 349, 551
Ecl136II GAGCTC 1 cut(s) 73
Eco130I CCWWGG 1 cut(s) 339
Eco24I GRGCYC 1 cut(s) 75
Eco53kI GAGCTC 1 cut(s) 73
Eco57I CTGAAG 1 cut(s) 489
EcoICRI GAGCTC 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 192
EcoT14I CCWWGG 1 cut(s) 339
EcoT38I GRGCYC 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 339
FaeI CATG 3 cut(s) 106, 119, 388
FaqI GGGAC 1 cut(s) 556
FatI CATG 3 cut(s) 102, 115, 384
FauNDI CATATG 1 cut(s) 346
Fnu4HI GCNGC 5 cut(s) 264, 336, 357, 414, 475
FokI GGATG 1 cut(s) 158
FriOI GRGCYC 1 cut(s) 75
Fsp4HI GCNGC 5 cut(s) 264, 336, 357, 414, 475
FspBI CTAG 2 cut(s) 308, 613
GlaI GCGC 2 cut(s) 297, 371
GluI GCNGC 5 cut(s) 264, 336, 357, 414, 475
GsaI CCCAGC 1 cut(s) 401
HaeIII GGCC 2 cut(s) 383, 454
HgaI GACGC 2 cut(s) 233, 553
HhaI GCGC 2 cut(s) 298, 372
Hin1I GRCGYC 2 cut(s) 244, 545
Hin1II CATG 3 cut(s) 106, 119, 388
Hin6I GCGC 2 cut(s) 296, 370
HinP1I GCGC 2 cut(s) 296, 370
HincII GTYRAC 1 cut(s) 182
HindII GTYRAC 1 cut(s) 182
HinfI GANTC 5 cut(s) 92, 278, 447, 509, 557
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 182
Hpy188I TCNGA 5 cut(s) 215, 508, 556, 562, 606
Hpy8I GTNNAC 1 cut(s) 182
Hpy99I CGWCG 1 cut(s) 215
HpyCH4III ACNGT 1 cut(s) 494
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 3 cut(s) 284, 416, 474
HpyF10VI GCNNNNNNNGC 4 cut(s) 163, 304, 332, 341
HpyF3I CTNAG 3 cut(s) 33, 378, 561
HpySE526I ACGT 1 cut(s) 210
Hsp92I GRCGYC 2 cut(s) 244, 545
Hsp92II CATG 3 cut(s) 106, 119, 388
HspAI GCGC 2 cut(s) 296, 370
Kzo9I GATC 2 cut(s) 349, 551
LmnI GCTCC 1 cut(s) 78
LpnPI CCDG 4 cut(s) 179, 206, 411, 436
Lsp1109I GCAGC 5 cut(s) 275, 322, 368, 400, 486
LweI GCATC 1 cut(s) 425
MaeI CTAG 2 cut(s) 308, 613
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 1 cut(s) 275
MalI GATC 2 cut(s) 351, 553
MboI GATC 2 cut(s) 349, 551
MboII GAAGA 1 cut(s) 341
MhlI GDGCHC 1 cut(s) 75
MluCI AATT 3 cut(s) 391, 405, 569
MlyI GAGTC 3 cut(s) 86, 272, 503
MmeI TCCRAC 1 cut(s) 193
MseI TTAA 5 cut(s) 318, 390, 462, 479, 572
MspA1I CMGCKG 2 cut(s) 266, 401
MspR9I CCNGG 1 cut(s) 194
Mva1269I GAATGC 1 cut(s) 372
MvaI CCWGG 1 cut(s) 194
MvnI CGCG 2 cut(s) 298, 372
MwoI GCNNNNNNNGC 4 cut(s) 163, 304, 332, 341
NdeI CATATG 1 cut(s) 346
NdeII GATC 2 cut(s) 349, 551
NlaIII CATG 3 cut(s) 106, 119, 388
NlaIV GGNNCC 2 cut(s) 167, 198
NmuCI GTSAC 1 cut(s) 275
NspV TTCGAA 1 cut(s) 364
PctI GAATGC 1 cut(s) 372
PfeI GAWTC 2 cut(s) 447, 557
PflFI GACNNNGTC 1 cut(s) 104
PkrI GCNGC 5 cut(s) 265, 337, 358, 415, 476
PleI GAGTC 3 cut(s) 86, 272, 503
PpsI GAGTC 3 cut(s) 86, 272, 503
Psp124BI GAGCTC 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 192
PspFI CCCAGC 1 cut(s) 397
PspGI CCWGG 1 cut(s) 192
PspN4I GGNNCC 2 cut(s) 167, 198
PstNI CAGNNNCTG 1 cut(s) 560
PsyI GACNNNGTC 1 cut(s) 104
PvuII CAGCTG 2 cut(s) 266, 401
RsaI GTAC 4 cut(s) 260, 376, 496, 588
RsaNI GTAC 4 cut(s) 259, 375, 495, 587
SacI GAGCTC 1 cut(s) 75
SaqAI TTAA 5 cut(s) 318, 390, 462, 479, 572
SatI GCNGC 5 cut(s) 264, 336, 357, 414, 475
Sau3AI GATC 2 cut(s) 349, 551
ScaI AGTACT 1 cut(s) 496
SchI GAGTC 3 cut(s) 86, 272, 503
ScrFI CCNGG 1 cut(s) 194
SduI GDGCHC 1 cut(s) 75
SfaNI GCATC 1 cut(s) 425
SfcI CTRYAG 1 cut(s) 226
SfuI TTCGAA 1 cut(s) 364
SmlI CTYRAG 1 cut(s) 511
SmoI CTYRAG 1 cut(s) 511
Sse9I AATT 3 cut(s) 391, 405, 569
SsiI CCGC 2 cut(s) 372, 578
SspMI CTAG 2 cut(s) 308, 613
SstI GAGCTC 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 192
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 1 cut(s) 494
TaiI ACGT 1 cut(s) 213
TaqI TCGA 2 cut(s) 352, 364
TasI AATT 3 cut(s) 391, 405, 569
TatI WGTACW 1 cut(s) 494
TfiI GAWTC 2 cut(s) 447, 557
Tru1I TTAA 5 cut(s) 318, 390, 462, 479, 572
Tru9I TTAA 5 cut(s) 318, 390, 462, 479, 572
TseFI GTSAC 1 cut(s) 275
TseI GCWGC 5 cut(s) 263, 335, 356, 413, 474
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 2 cut(s) 141, 431
TspGWI ACGGA 2 cut(s) 237, 263
Tth111I GACNNNGTC 1 cut(s) 104
XspI CTAG 2 cut(s) 308, 613
ZrmI AGTACT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.